HEADER VIRAL PROTEIN 26-OCT-18 6MVK TITLE HCV NS5B 1B N316 BOUND TO COMPOUND 18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HCV POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS SUBTYPE 1B; SOURCE 3 ORGANISM_TAXID: 31647; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS HEPATITUS C, NS5B, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.WILLIAMS,K.KAHLER,D.J.PRICE,A.J.PEAT REVDAT 2 13-MAR-24 6MVK 1 REMARK REVDAT 1 04-SEP-19 6MVK 0 JRNL AUTH P.Y.CHONG,J.B.SHOTWELL,J.MILLER,D.J.PRICE,A.MAYNARD, JRNL AUTH 2 C.VOITENLEITNER,A.MATHIS,S.WILLIAMS,J.J.POULIOT,K.CREECH, JRNL AUTH 3 F.WANG,J.FANG,H.ZHANG,V.W.TAI,E.TURNER,K.M.KAHLER,R.CROSBY, JRNL AUTH 4 A.J.PEAT JRNL TITL DESIGN OF N-BENZOXABOROLE BENZOFURAN GSK8175-OPTIMIZATION OF JRNL TITL 2 HUMAN PHARMACOKINETICS INSPIRED BY METABOLITES OF A FAILED JRNL TITL 3 CLINICAL HCV INHIBITOR. JRNL REF J.MED.CHEM. V. 62 3254 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 30763090 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01719 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0081 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 48865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.400 REMARK 3 FREE R VALUE TEST SET COUNT : 3903 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3361 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 260 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8387 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.30000 REMARK 3 B22 (A**2) : 25.46000 REMARK 3 B33 (A**2) : -14.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8662 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5740 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11805 ; 1.094 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13988 ; 1.133 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1094 ; 5.074 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 336 ;32.251 ;23.095 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1374 ;12.867 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;12.995 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1347 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9631 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1750 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 563 REMARK 3 RESIDUE RANGE : A 601 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): 11.488 46.276 47.390 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: 0.0458 REMARK 3 T33: 0.0083 T12: -0.0249 REMARK 3 T13: -0.0045 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.2855 L22: 0.1094 REMARK 3 L33: 0.7005 L12: -0.0783 REMARK 3 L13: 0.2351 L23: -0.0900 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: -0.0259 S13: 0.0148 REMARK 3 S21: -0.0038 S22: -0.0290 S23: -0.0082 REMARK 3 S31: 0.0832 S32: -0.0241 S33: -0.0356 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 562 REMARK 3 RESIDUE RANGE : B 601 B 601 REMARK 3 ORIGIN FOR THE GROUP (A): -11.520 46.390 -7.692 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.0451 REMARK 3 T33: 0.0068 T12: 0.0178 REMARK 3 T13: -0.0035 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3599 L22: 0.1391 REMARK 3 L33: 0.6689 L12: 0.0640 REMARK 3 L13: 0.1813 L23: 0.0819 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: 0.0240 S13: -0.0068 REMARK 3 S21: 0.0049 S22: -0.0118 S23: 0.0195 REMARK 3 S31: 0.0475 S32: 0.0249 S33: -0.0382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 6MVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52919 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.6.0081 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CITRATE PH5.0, 10% GLYCEROL, REMARK 280 15% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.18600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.37200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.73400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.37200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.18600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.73400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 149 REMARK 465 GLU A 150 REMARK 465 LYS A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 ALA A 541 REMARK 465 ALA A 542 REMARK 465 SER A 543 REMARK 465 GLN A 544 REMARK 465 LEU A 545 REMARK 465 ASP A 546 REMARK 465 LEU A 547 REMARK 465 SER A 548 REMARK 465 GLU B 150 REMARK 465 LYS B 151 REMARK 465 GLY B 152 REMARK 465 GLY B 153 REMARK 465 ALA B 541 REMARK 465 ALA B 542 REMARK 465 SER B 543 REMARK 465 GLN B 544 REMARK 465 LEU B 545 REMARK 465 ASP B 546 REMARK 465 LEU B 547 REMARK 465 SER B 548 REMARK 465 ALA B 563 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 ARG A 43 CD NE CZ NH1 NH2 REMARK 470 GLN A 47 CG CD OE1 NE2 REMARK 470 LYS A 81 CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LYS A 106 CD CE NZ REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 ARG A 222 CD NE CZ NH1 NH2 REMARK 470 LYS A 270 CE NZ REMARK 470 LYS A 307 CD CE NZ REMARK 470 GLN A 309 CG CD OE1 NE2 REMARK 470 ARG A 380 CD NE CZ NH1 NH2 REMARK 470 GLU A 440 CG CD OE1 OE2 REMARK 470 ARG A 498 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 501 NE CZ NH1 NH2 REMARK 470 LYS A 523 CD CE NZ REMARK 470 LYS A 531 CD CE NZ REMARK 470 THR A 532 OG1 CG2 REMARK 470 LYS A 535 CG CD CE NZ REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 ARG B 32 NE CZ NH1 NH2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 141 CE NZ REMARK 470 GLN B 148 CG CD OE1 NE2 REMARK 470 PRO B 149 CG CD REMARK 470 ARG B 154 CZ NH1 NH2 REMARK 470 LYS B 155 CE NZ REMARK 470 ARG B 158 NE CZ NH1 NH2 REMARK 470 GLU B 202 CD OE1 OE2 REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 ASP B 220 CG OD1 OD2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 270 CE NZ REMARK 470 LYS B 307 CE NZ REMARK 470 GLN B 309 CG CD OE1 NE2 REMARK 470 ASP B 352 CG OD1 OD2 REMARK 470 ARG B 380 CZ NH1 NH2 REMARK 470 ARG B 501 NE CZ NH1 NH2 REMARK 470 ARG B 505 NE CZ NH1 NH2 REMARK 470 LYS B 523 CG CD CE NZ REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 THR B 532 OG1 CG2 REMARK 470 LYS B 535 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O23 K4J A 601 O HOH A 701 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 260 -57.46 -127.09 REMARK 500 ILE A 424 -60.73 -101.89 REMARK 500 LEU B 260 -57.63 -127.72 REMARK 500 ILE B 424 -60.51 -101.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K4J A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K4J B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6MVP RELATED DB: PDB REMARK 900 RELATED ID: 6MVQ RELATED DB: PDB REMARK 900 RELATED ID: 6MVO RELATED DB: PDB DBREF 6MVK A 1 563 UNP Q99AU2 Q99AU2_9HEPC 2420 2982 DBREF 6MVK B 1 563 UNP Q99AU2 Q99AU2_9HEPC 2420 2982 SEQADV 6MVK GLN A 47 UNP Q99AU2 LEU 2466 CONFLICT SEQADV 6MVK TYR A 101 UNP Q99AU2 PHE 2520 CONFLICT SEQADV 6MVK ARG A 114 UNP Q99AU2 LYS 2533 CONFLICT SEQADV 6MVK VAL A 329 UNP Q99AU2 THR 2748 CONFLICT SEQADV 6MVK ALA A 563 UNP Q99AU2 SER 2982 CONFLICT SEQADV 6MVK GLN B 47 UNP Q99AU2 LEU 2466 CONFLICT SEQADV 6MVK TYR B 101 UNP Q99AU2 PHE 2520 CONFLICT SEQADV 6MVK ARG B 114 UNP Q99AU2 LYS 2533 CONFLICT SEQADV 6MVK VAL B 329 UNP Q99AU2 THR 2748 CONFLICT SEQADV 6MVK ALA B 563 UNP Q99AU2 SER 2982 CONFLICT SEQRES 1 A 563 SER MET SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 A 563 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN ALA LEU SEQRES 3 A 563 SER ASN SER LEU LEU ARG HIS HIS ASN MET VAL TYR ALA SEQRES 4 A 563 THR THR SER ARG SER ALA GLY GLN ARG GLN LYS LYS VAL SEQRES 5 A 563 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 A 563 ASP VAL LEU LYS GLU MET LYS ALA LYS ALA SER THR VAL SEQRES 7 A 563 LYS ALA LYS LEU LEU SER VAL GLU GLU ALA CYS LYS LEU SEQRES 8 A 563 THR PRO PRO HIS SER ALA LYS SER LYS TYR GLY TYR GLY SEQRES 9 A 563 ALA LYS ASP VAL ARG ASN LEU SER SER ARG ALA VAL ASN SEQRES 10 A 563 HIS ILE HIS SER VAL TRP LYS ASP LEU LEU GLU ASP THR SEQRES 11 A 563 VAL THR PRO ILE ASP THR THR ILE MET ALA LYS ASN GLU SEQRES 12 A 563 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 A 563 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 A 563 CYS GLU LYS MET ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 A 563 PRO GLN VAL VAL MET GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 A 563 SER PRO GLY GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 A 563 LYS SER LYS LYS ASN PRO MET GLY PHE SER TYR ASP THR SEQRES 18 A 563 ARG CYS PHE ASP SER THR VAL THR GLU ASN ASP ILE ARG SEQRES 19 A 563 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 A 563 GLU ALA ARG GLN ALA ILE LYS SER LEU THR GLU ARG LEU SEQRES 21 A 563 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 A 563 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 A 563 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 A 563 SER ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 A 563 MET LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 A 563 SER ALA GLY VAL GLN GLU ASP ALA ALA SER LEU ARG VAL SEQRES 27 A 563 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 A 563 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 A 563 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 A 563 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 A 563 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 A 563 PRO VAL ASN SER TRP LEU GLY ASN ILE ILE MET TYR ALA SEQRES 33 A 563 PRO THR LEU TRP ALA ARG MET ILE LEU MET THR HIS PHE SEQRES 34 A 563 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLU LYS ALA SEQRES 35 A 563 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 A 563 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 A 563 LEU SER ALA PHE SER LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 A 563 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 A 563 PRO PRO LEU ARG VAL TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 A 563 ARG ALA ARG LEU LEU SER GLN GLY GLY ARG ALA ALA THR SEQRES 41 A 563 CYS GLY LYS TYR LEU PHE ASN TRP ALA VAL LYS THR LYS SEQRES 42 A 563 LEU LYS LEU THR PRO ILE PRO ALA ALA SER GLN LEU ASP SEQRES 43 A 563 LEU SER GLY TRP PHE VAL ALA GLY TYR SER GLY GLY ASP SEQRES 44 A 563 ILE TYR HIS ALA SEQRES 1 B 563 SER MET SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 B 563 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN ALA LEU SEQRES 3 B 563 SER ASN SER LEU LEU ARG HIS HIS ASN MET VAL TYR ALA SEQRES 4 B 563 THR THR SER ARG SER ALA GLY GLN ARG GLN LYS LYS VAL SEQRES 5 B 563 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 B 563 ASP VAL LEU LYS GLU MET LYS ALA LYS ALA SER THR VAL SEQRES 7 B 563 LYS ALA LYS LEU LEU SER VAL GLU GLU ALA CYS LYS LEU SEQRES 8 B 563 THR PRO PRO HIS SER ALA LYS SER LYS TYR GLY TYR GLY SEQRES 9 B 563 ALA LYS ASP VAL ARG ASN LEU SER SER ARG ALA VAL ASN SEQRES 10 B 563 HIS ILE HIS SER VAL TRP LYS ASP LEU LEU GLU ASP THR SEQRES 11 B 563 VAL THR PRO ILE ASP THR THR ILE MET ALA LYS ASN GLU SEQRES 12 B 563 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 B 563 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 B 563 CYS GLU LYS MET ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 B 563 PRO GLN VAL VAL MET GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 B 563 SER PRO GLY GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 B 563 LYS SER LYS LYS ASN PRO MET GLY PHE SER TYR ASP THR SEQRES 18 B 563 ARG CYS PHE ASP SER THR VAL THR GLU ASN ASP ILE ARG SEQRES 19 B 563 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 B 563 GLU ALA ARG GLN ALA ILE LYS SER LEU THR GLU ARG LEU SEQRES 21 B 563 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 B 563 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 B 563 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 B 563 SER ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 B 563 MET LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 B 563 SER ALA GLY VAL GLN GLU ASP ALA ALA SER LEU ARG VAL SEQRES 27 B 563 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 B 563 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 B 563 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 B 563 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 B 563 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 B 563 PRO VAL ASN SER TRP LEU GLY ASN ILE ILE MET TYR ALA SEQRES 33 B 563 PRO THR LEU TRP ALA ARG MET ILE LEU MET THR HIS PHE SEQRES 34 B 563 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLU LYS ALA SEQRES 35 B 563 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 B 563 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 B 563 LEU SER ALA PHE SER LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 B 563 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 B 563 PRO PRO LEU ARG VAL TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 B 563 ARG ALA ARG LEU LEU SER GLN GLY GLY ARG ALA ALA THR SEQRES 41 B 563 CYS GLY LYS TYR LEU PHE ASN TRP ALA VAL LYS THR LYS SEQRES 42 B 563 LEU LYS LEU THR PRO ILE PRO ALA ALA SER GLN LEU ASP SEQRES 43 B 563 LEU SER GLY TRP PHE VAL ALA GLY TYR SER GLY GLY ASP SEQRES 44 B 563 ILE TYR HIS ALA HET K4J A 601 39 HET K4J B 601 39 HETNAM K4J (4-{(4S)-3-[5-CYCLOPROPYL-2-(4-FLUOROPHENYL)-3- HETNAM 2 K4J (METHYLCARBAMOYL)-1-BENZOFURAN-6-YL]-2-OXO-1,3- HETNAM 3 K4J OXAZOLIDIN-4-YL}-2-FLUOROPHENYL)BORONIC ACID FORMUL 3 K4J 2(C28 H23 B F2 N2 O6) FORMUL 5 HOH *347(H2 O) HELIX 1 AA1 LEU A 26 LEU A 31 1 6 HELIX 2 AA2 HIS A 33 ASN A 35 5 3 HELIX 3 AA3 THR A 41 ARG A 43 5 3 HELIX 4 AA4 SER A 44 THR A 53 1 10 HELIX 5 AA5 ASP A 61 SER A 76 1 16 HELIX 6 AA6 SER A 84 LEU A 91 1 8 HELIX 7 AA7 GLY A 104 ASN A 110 1 7 HELIX 8 AA8 SER A 112 ASP A 129 1 18 HELIX 9 AA9 ASP A 164 GLY A 188 1 25 HELIX 10 AB1 SER A 189 TYR A 195 5 7 HELIX 11 AB2 SER A 196 SER A 210 1 15 HELIX 12 AB3 CYS A 223 VAL A 228 1 6 HELIX 13 AB4 THR A 229 CYS A 242 1 14 HELIX 14 AB5 ALA A 246 LEU A 260 1 15 HELIX 15 AB6 THR A 286 ALA A 306 1 21 HELIX 16 AB7 GLY A 328 TYR A 346 1 19 HELIX 17 AB8 ASP A 359 ILE A 363 5 5 HELIX 18 AB9 PRO A 388 ARG A 401 1 14 HELIX 19 AC1 ASN A 406 TYR A 415 1 10 HELIX 20 AC2 THR A 418 ILE A 424 1 7 HELIX 21 AC3 ILE A 424 GLU A 437 1 14 HELIX 22 AC4 GLU A 455 LEU A 457 5 3 HELIX 23 AC5 ASP A 458 GLY A 468 1 11 HELIX 24 AC6 LEU A 469 SER A 473 5 5 HELIX 25 AC7 SER A 478 GLY A 493 1 16 HELIX 26 AC8 PRO A 496 GLY A 515 1 20 HELIX 27 AC9 GLY A 515 PHE A 526 1 12 HELIX 28 AD1 ASN A 527 VAL A 530 5 4 HELIX 29 AD2 LEU B 26 LEU B 31 1 6 HELIX 30 AD3 HIS B 33 ASN B 35 5 3 HELIX 31 AD4 THR B 41 ARG B 43 5 3 HELIX 32 AD5 SER B 44 THR B 53 1 10 HELIX 33 AD6 ASP B 61 SER B 76 1 16 HELIX 34 AD7 SER B 84 LEU B 91 1 8 HELIX 35 AD8 GLY B 104 ASN B 110 1 7 HELIX 36 AD9 SER B 112 ASP B 129 1 18 HELIX 37 AE1 ASP B 164 GLY B 188 1 25 HELIX 38 AE2 SER B 189 TYR B 195 5 7 HELIX 39 AE3 SER B 196 SER B 210 1 15 HELIX 40 AE4 CYS B 223 VAL B 228 1 6 HELIX 41 AE5 THR B 229 CYS B 242 1 14 HELIX 42 AE6 ALA B 246 LEU B 260 1 15 HELIX 43 AE7 THR B 286 ALA B 306 1 21 HELIX 44 AE8 GLY B 328 TYR B 346 1 19 HELIX 45 AE9 ASP B 359 ILE B 363 5 5 HELIX 46 AF1 PRO B 388 ARG B 401 1 14 HELIX 47 AF2 ASN B 406 TYR B 415 1 10 HELIX 48 AF3 THR B 418 ILE B 424 1 7 HELIX 49 AF4 ILE B 424 GLU B 437 1 14 HELIX 50 AF5 GLU B 455 LEU B 457 5 3 HELIX 51 AF6 ASP B 458 GLY B 468 1 11 HELIX 52 AF7 LEU B 469 SER B 473 5 5 HELIX 53 AF8 SER B 478 GLY B 493 1 16 HELIX 54 AF9 PRO B 496 GLY B 515 1 20 HELIX 55 AG1 GLY B 515 PHE B 526 1 12 HELIX 56 AG2 ASN B 527 VAL B 530 5 4 SHEET 1 AA1 5 TYR A 4 TRP A 6 0 SHEET 2 AA1 5 ASN A 273 ARG A 277 -1 O TYR A 276 N THR A 5 SHEET 3 AA1 5 GLY A 264 THR A 267 -1 N LEU A 266 O CYS A 274 SHEET 4 AA1 5 THR A 136 ALA A 140 1 N THR A 136 O THR A 267 SHEET 5 AA1 5 LEU A 159 PHE A 162 -1 O PHE A 162 N THR A 137 SHEET 1 AA2 2 VAL A 37 ALA A 39 0 SHEET 2 AA2 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 AA3 3 PRO A 214 ASP A 220 0 SHEET 2 AA3 3 ASP A 319 GLU A 325 -1 O CYS A 324 N MET A 215 SHEET 3 AA3 3 GLN A 309 ASN A 316 -1 N THR A 312 O ILE A 323 SHEET 1 AA4 2 SER A 368 HIS A 374 0 SHEET 2 AA4 2 ARG A 380 ARG A 386 -1 O VAL A 381 N ALA A 373 SHEET 1 AA5 3 LEU A 443 ILE A 447 0 SHEET 2 AA5 3 ALA A 450 ILE A 454 -1 O TYR A 452 N CYS A 445 SHEET 3 AA5 3 TYR A 561 HIS A 562 1 O HIS A 562 N CYS A 451 SHEET 1 AA6 5 TYR B 4 TRP B 6 0 SHEET 2 AA6 5 ASN B 273 ARG B 277 -1 O TYR B 276 N THR B 5 SHEET 3 AA6 5 GLY B 264 THR B 267 -1 N LEU B 266 O CYS B 274 SHEET 4 AA6 5 THR B 136 ALA B 140 1 N THR B 136 O THR B 267 SHEET 5 AA6 5 LEU B 159 PHE B 162 -1 O PHE B 162 N THR B 137 SHEET 1 AA7 2 VAL B 37 ALA B 39 0 SHEET 2 AA7 2 VAL B 144 CYS B 146 -1 O PHE B 145 N TYR B 38 SHEET 1 AA8 3 PRO B 214 ASP B 220 0 SHEET 2 AA8 3 ASP B 319 GLU B 325 -1 O CYS B 324 N MET B 215 SHEET 3 AA8 3 GLN B 309 ASN B 316 -1 N THR B 312 O ILE B 323 SHEET 1 AA9 2 SER B 368 HIS B 374 0 SHEET 2 AA9 2 ARG B 380 ARG B 386 -1 O VAL B 381 N ALA B 373 SHEET 1 AB1 3 LEU B 443 ILE B 447 0 SHEET 2 AB1 3 ALA B 450 ILE B 454 -1 O TYR B 452 N CYS B 445 SHEET 3 AB1 3 TYR B 561 HIS B 562 1 O HIS B 562 N CYS B 451 SITE 1 AC1 16 ARG A 200 LEU A 204 LEU A 314 ASN A 316 SITE 2 AC1 16 VAL A 321 LEU A 360 ILE A 363 SER A 365 SITE 3 AC1 16 CYS A 366 SER A 368 LEU A 384 MET A 414 SITE 4 AC1 16 TYR A 415 TYR A 448 HOH A 701 HOH A 842 SITE 1 AC2 17 PRO B 197 ARG B 200 LEU B 204 LEU B 314 SITE 2 AC2 17 ASN B 316 ASP B 319 LEU B 360 ILE B 363 SITE 3 AC2 17 SER B 365 SER B 368 LEU B 384 MET B 414 SITE 4 AC2 17 TYR B 415 TYR B 448 HOH B 701 HOH B 801 SITE 5 AC2 17 HOH B 827 CRYST1 86.372 107.468 126.744 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011578 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007890 0.00000