HEADER IMMUNE SYSTEM 26-OCT-18 6MVL TITLE CRYSTAL STRUCTURE OF VISTA BOUND TO A PH-SELECTIVE ANTIBODY FAB TITLE 2 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: V-TYPE IMMUNOGLOBULIN DOMAIN-CONTAINING SUPPRESSOR OF T- COMPND 3 CELL ACTIVATION; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PLATELET RECEPTOR GI24,STRESS-INDUCED SECRETED PROTEIN-1, COMPND 6 SISP-1,V-SET DOMAIN-CONTAINING IMMUNOREGULATORY RECEPTOR,V-SET COMPND 7 IMMUNOREGULATORY RECEPTOR; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: ANTIBODY FAB FRAGMENT HEAVY CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: ANTIBODY FAB FRAGMENT LIGHT CHAIN; COMPND 16 CHAIN: L; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VSIR, C10ORF54, SISP1, VISTA, PP2135, UNQ730/PRO1412; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS IMMUNOGLOBULIN, CHECKPOINT, ANTIBODY, COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.A.CRITTON REVDAT 4 23-OCT-24 6MVL 1 HETSYN REVDAT 3 29-JUL-20 6MVL 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 06-NOV-19 6MVL 1 JRNL REVDAT 1 23-OCT-19 6MVL 0 JRNL AUTH R.J.JOHNSTON,L.J.SU,J.PINCKNEY,D.CRITTON,E.BOYER, JRNL AUTH 2 A.KRISHNAKUMAR,M.CORBETT,A.L.RANKIN,R.DIBELLA,L.CAMPBELL, JRNL AUTH 3 G.H.MARTIN,H.LEMAR,T.CAYTON,R.Y.HUANG,X.DENG,A.NAYEEM, JRNL AUTH 4 H.CHEN,B.ERGEL,J.M.RIZZO,A.P.YAMNIUK,S.DUTTA,J.NGO, JRNL AUTH 5 A.O.SHORTS,R.RAMAKRISHNAN,A.KOZHICH,J.HOLLOWAY,H.FANG, JRNL AUTH 6 Y.K.WANG,Z.YANG,K.THIAM,G.RAKESTRAW,A.RAJPAL,P.SHEPPARD, JRNL AUTH 7 M.QUIGLEY,K.S.BAHJAT,A.J.KORMAN JRNL TITL VISTA IS AN ACIDIC PH-SELECTIVE LIGAND FOR PSGL-1. JRNL REF NATURE V. 574 565 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 31645726 JRNL DOI 10.1038/S41586-019-1674-5 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 53.4 REMARK 3 NUMBER OF REFLECTIONS : 55883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2759 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.58 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1118 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2443 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1063 REMARK 3 BIN R VALUE (WORKING SET) : 0.2439 REMARK 3 BIN FREE R VALUE : 0.2506 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.92 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 758 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.23300 REMARK 3 B22 (A**2) : 2.74010 REMARK 3 B33 (A**2) : -0.50710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.156 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.144 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.137 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.135 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4470 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6101 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1453 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 746 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4470 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 584 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5556 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.71 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.29 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -38.3113 14.2674 12.7294 REMARK 3 T TENSOR REMARK 3 T11: -0.0970 T22: 0.3274 REMARK 3 T33: -0.1434 T12: -0.0302 REMARK 3 T13: -0.0212 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 6.5361 L22: 2.9625 REMARK 3 L33: 2.6367 L12: 2.6849 REMARK 3 L13: 0.5279 L23: -0.4021 REMARK 3 S TENSOR REMARK 3 S11: -0.1721 S12: 0.9110 S13: 0.0292 REMARK 3 S21: -0.1583 S22: 0.2880 S23: 0.0931 REMARK 3 S31: 0.0839 S32: -0.3836 S33: -0.1159 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { H|* } REMARK 3 ORIGIN FOR THE GROUP (A): -5.7525 17.5446 39.5212 REMARK 3 T TENSOR REMARK 3 T11: -0.0671 T22: -0.0395 REMARK 3 T33: -0.0585 T12: 0.0159 REMARK 3 T13: -0.0169 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 1.2662 L22: 0.7419 REMARK 3 L33: 0.2908 L12: 0.2850 REMARK 3 L13: -0.1959 L23: 0.0910 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: 0.0895 S13: 0.1388 REMARK 3 S21: -0.0351 S22: 0.0048 S23: 0.0155 REMARK 3 S31: -0.0489 S32: -0.0410 S33: -0.0017 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { L|* } REMARK 3 ORIGIN FOR THE GROUP (A): 6.7287 5.0956 34.6679 REMARK 3 T TENSOR REMARK 3 T11: -0.0841 T22: -0.0453 REMARK 3 T33: -0.0532 T12: -0.0026 REMARK 3 T13: -0.0009 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.8800 L22: 0.9301 REMARK 3 L33: 0.5298 L12: 0.3653 REMARK 3 L13: 0.4750 L23: 0.0129 REMARK 3 S TENSOR REMARK 3 S11: -0.0515 S12: 0.1782 S13: 0.0571 REMARK 3 S21: -0.0159 S22: 0.0385 S23: -0.1537 REMARK 3 S31: 0.0561 S32: -0.0256 S33: 0.0131 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KIRKPATRICK-BAEZ REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55883 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.606 REMARK 200 RESOLUTION RANGE LOW (A) : 96.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.72400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 0.1 M REMARK 280 PHOSPHATE/CITRATE, PH 4.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.08300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.02000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.92800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.02000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.08300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.92800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.08300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.92800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.02000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.92800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.08300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 96.02000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -187.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 522 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 678 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 32 REMARK 465 PRO A 59 REMARK 465 VAL A 60 REMARK 465 ASP A 61 REMARK 465 LYS A 62 REMARK 465 GLY A 63 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 GLY A 102 REMARK 465 GLY A 103 REMARK 465 HIS A 104 REMARK 465 GLN A 105 REMARK 465 ALA A 106 REMARK 465 ALA A 107 REMARK 465 GLN A 108 REMARK 465 THR A 109 REMARK 465 SER A 110 REMARK 465 VAL A 180 REMARK 465 TYR A 181 REMARK 465 PRO A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 SER A 185 REMARK 465 GLN A 186 REMARK 465 ASP A 187 REMARK 465 SER A 188 REMARK 465 GLU A 189 REMARK 465 GLN A 190 REMARK 465 ILE A 191 REMARK 465 THR A 192 REMARK 465 ALA A 193 REMARK 465 ALA A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 SER H 225 REMARK 465 CYS H 226 REMARK 465 ASP H 227 REMARK 465 LYS H 228 REMARK 465 THR H 229 REMARK 465 SER L 31 REMARK 465 CYS L 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CE NZ REMARK 470 GLN A 48 CG CD OE1 NE2 REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 64 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 115 CG CD OE1 NE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 HIS A 125 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 126 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 134 NE CZ NH1 NH2 REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 169 CG CD OE1 NE2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 LYS H 16 CE NZ REMARK 470 GLN H 115 CD OE1 NE2 REMARK 470 GLN H 202 CD OE1 NE2 REMARK 470 LYS H 219 CE NZ REMARK 470 LYS H 224 CG CD CE NZ REMARK 470 GLU L 124 CG CD OE1 OE2 REMARK 470 GLN L 148 CD OE1 NE2 REMARK 470 LYS L 191 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 65 45.59 -100.41 REMARK 500 ARG A 77 38.10 -89.85 REMARK 500 HIS A 126 40.37 -100.59 REMARK 500 HIS A 153 117.41 -38.25 REMARK 500 HIS A 155 -56.41 -132.13 REMARK 500 GLU H 56 -60.07 -90.85 REMARK 500 ALA L 52 -35.89 67.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 511 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH H 720 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH H 721 DISTANCE = 6.11 ANGSTROMS DBREF 6MVL A 32 194 UNP Q9H7M9 VISTA_HUMAN 32 194 DBREF 6MVL H 1 229 PDB 6MVL 6MVL 1 229 DBREF 6MVL L 1 215 PDB 6MVL 6MVL 1 215 SEQADV 6MVL GLN A 91 UNP Q9H7M9 ASN 91 ENGINEERED MUTATION SEQADV 6MVL GLN A 108 UNP Q9H7M9 ASN 108 ENGINEERED MUTATION SEQADV 6MVL GLN A 190 UNP Q9H7M9 ASN 190 ENGINEERED MUTATION SEQADV 6MVL HIS A 195 UNP Q9H7M9 EXPRESSION TAG SEQADV 6MVL HIS A 196 UNP Q9H7M9 EXPRESSION TAG SEQADV 6MVL HIS A 197 UNP Q9H7M9 EXPRESSION TAG SEQADV 6MVL HIS A 198 UNP Q9H7M9 EXPRESSION TAG SEQADV 6MVL HIS A 199 UNP Q9H7M9 EXPRESSION TAG SEQADV 6MVL HIS A 200 UNP Q9H7M9 EXPRESSION TAG SEQRES 1 A 169 ALA PHE LYS VAL ALA THR PRO TYR SER LEU TYR VAL CYS SEQRES 2 A 169 PRO GLU GLY GLN ASN VAL THR LEU THR CYS ARG LEU LEU SEQRES 3 A 169 GLY PRO VAL ASP LYS GLY HIS ASP VAL THR PHE TYR LYS SEQRES 4 A 169 THR TRP TYR ARG SER SER ARG GLY GLU VAL GLN THR CYS SEQRES 5 A 169 SER GLU ARG ARG PRO ILE ARG GLN LEU THR PHE GLN ASP SEQRES 6 A 169 LEU HIS LEU HIS HIS GLY GLY HIS GLN ALA ALA GLN THR SEQRES 7 A 169 SER HIS ASP LEU ALA GLN ARG HIS GLY LEU GLU SER ALA SEQRES 8 A 169 SER ASP HIS HIS GLY ASN PHE SER ILE THR MET ARG ASN SEQRES 9 A 169 LEU THR LEU LEU ASP SER GLY LEU TYR CYS CYS LEU VAL SEQRES 10 A 169 VAL GLU ILE ARG HIS HIS HIS SER GLU HIS ARG VAL HIS SEQRES 11 A 169 GLY ALA MET GLU LEU GLN VAL GLN THR GLY LYS ASP ALA SEQRES 12 A 169 PRO SER ASN CYS VAL VAL TYR PRO SER SER SER GLN ASP SEQRES 13 A 169 SER GLU GLN ILE THR ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 H 229 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 229 PRO GLY LYS SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 229 PHE THR LEU GLU ASP TYR ALA MET HIS TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE ASP SEQRES 5 H 229 TRP ASN SER GLU ASN ILE GLY TYR ALA ASP SER VAL LYS SEQRES 6 H 229 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 229 LEU TYR LEU GLN MET ASN SER LEU ARG THR GLU ASP THR SEQRES 8 H 229 ALA LEU TYR TYR CYS ALA LYS VAL PRO GLY TYR SER GLY SEQRES 9 H 229 GLY TRP ILE ASP ALA GLU ASP ASP TRP GLY GLN GLY THR SEQRES 10 H 229 MET VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 229 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 229 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 229 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 229 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 229 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 229 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 229 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL SEQRES 18 H 229 GLU PRO LYS SER CYS ASP LYS THR SEQRES 1 L 215 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER VAL SER SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 215 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 215 TYR GLY SER SER PRO PHE THR PHE GLY PRO GLY THR LYS SEQRES 9 L 215 VAL ASP ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS HET NAG A 301 14 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 H 301 5 HET SO4 H 302 5 HET SO4 H 303 5 HET SO4 H 304 5 HET SO4 H 305 5 HET SO4 H 306 5 HET SO4 L 301 5 HET SO4 L 302 5 HET SO4 L 303 5 HET SO4 L 304 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 SO4 14(O4 S 2-) FORMUL 19 HOH *758(H2 O) HELIX 1 AA1 ASP A 112 HIS A 117 1 6 HELIX 2 AA2 THR A 137 SER A 141 5 5 HELIX 3 AA3 ASP H 62 LYS H 65 5 4 HELIX 4 AA4 ASN H 74 LYS H 76 5 3 HELIX 5 AA5 ARG H 87 THR H 91 5 5 HELIX 6 AA6 SER H 166 ALA H 168 5 3 HELIX 7 AA7 SER H 197 LEU H 199 5 3 HELIX 8 AA8 LYS H 211 ASN H 214 5 4 HELIX 9 AA9 GLU L 80 PHE L 84 5 5 HELIX 10 AB1 SER L 122 LYS L 127 1 6 HELIX 11 AB2 LYS L 184 LYS L 189 1 6 SHEET 1 AA1 4 LYS A 34 ALA A 36 0 SHEET 2 AA1 4 VAL A 50 LEU A 57 -1 O ARG A 55 N ALA A 36 SHEET 3 AA1 4 ASN A 128 MET A 133 -1 O MET A 133 N VAL A 50 SHEET 4 AA1 4 LEU A 119 SER A 123 -1 N ALA A 122 O SER A 130 SHEET 1 AA2 4 LEU A 41 PRO A 45 0 SHEET 2 AA2 4 SER A 156 GLN A 169 1 O GLN A 167 N TYR A 42 SHEET 3 AA2 4 GLY A 142 ARG A 152 -1 N TYR A 144 O MET A 164 SHEET 4 AA2 4 VAL A 66 ARG A 74 -1 N THR A 67 O ILE A 151 SHEET 1 AA3 4 GLN H 3 SER H 7 0 SHEET 2 AA3 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA3 4 SER H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA3 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA4 6 GLY H 10 VAL H 12 0 SHEET 2 AA4 6 THR H 117 VAL H 121 1 O THR H 120 N GLY H 10 SHEET 3 AA4 6 ALA H 92 LYS H 98 -1 N TYR H 94 O THR H 117 SHEET 4 AA4 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA4 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA4 6 ILE H 58 TYR H 60 -1 O GLY H 59 N GLY H 50 SHEET 1 AA5 4 GLY H 10 VAL H 12 0 SHEET 2 AA5 4 THR H 117 VAL H 121 1 O THR H 120 N GLY H 10 SHEET 3 AA5 4 ALA H 92 LYS H 98 -1 N TYR H 94 O THR H 117 SHEET 4 AA5 4 ASP H 112 TRP H 113 -1 O ASP H 112 N LYS H 98 SHEET 1 AA6 4 SER H 130 LEU H 134 0 SHEET 2 AA6 4 THR H 145 TYR H 155 -1 O LYS H 153 N SER H 130 SHEET 3 AA6 4 TYR H 186 PRO H 195 -1 O LEU H 188 N VAL H 152 SHEET 4 AA6 4 VAL H 173 THR H 175 -1 N HIS H 174 O VAL H 191 SHEET 1 AA7 4 SER H 130 LEU H 134 0 SHEET 2 AA7 4 THR H 145 TYR H 155 -1 O LYS H 153 N SER H 130 SHEET 3 AA7 4 TYR H 186 PRO H 195 -1 O LEU H 188 N VAL H 152 SHEET 4 AA7 4 VAL H 179 LEU H 180 -1 N VAL H 179 O SER H 187 SHEET 1 AA8 3 THR H 161 TRP H 164 0 SHEET 2 AA8 3 ILE H 205 HIS H 210 -1 O ASN H 207 N SER H 163 SHEET 3 AA8 3 THR H 215 ARG H 220 -1 O VAL H 217 N VAL H 208 SHEET 1 AA9 4 LEU L 4 SER L 7 0 SHEET 2 AA9 4 ALA L 19 ALA L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA9 4 ASP L 71 ILE L 76 -1 O PHE L 72 N CYS L 23 SHEET 4 AA9 4 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AB1 6 THR L 10 LEU L 13 0 SHEET 2 AB1 6 THR L 103 ILE L 107 1 O ASP L 106 N LEU L 11 SHEET 3 AB1 6 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 105 SHEET 4 AB1 6 LEU L 34 GLN L 39 -1 N ALA L 35 O GLN L 90 SHEET 5 AB1 6 ARG L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AB1 6 SER L 54 ARG L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AB2 4 SER L 115 PHE L 119 0 SHEET 2 AB2 4 THR L 130 PHE L 140 -1 O LEU L 136 N PHE L 117 SHEET 3 AB2 4 TYR L 174 SER L 183 -1 O LEU L 182 N ALA L 131 SHEET 4 AB2 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AB3 4 ALA L 154 LEU L 155 0 SHEET 2 AB3 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB3 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 AB3 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS A 44 CYS A 178 1555 1555 2.05 SSBOND 2 CYS A 54 CYS A 146 1555 1555 2.03 SSBOND 3 CYS A 83 CYS A 145 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 5 CYS H 150 CYS H 206 1555 1555 2.03 SSBOND 6 CYS L 23 CYS L 89 1555 1555 2.07 SSBOND 7 CYS L 135 CYS L 195 1555 1555 2.05 LINK ND2 ASN A 49 C1 NAG A 301 1555 1555 1.43 CISPEP 1 TRP H 106 ILE H 107 0 -3.62 CISPEP 2 PHE H 156 PRO H 157 0 -7.14 CISPEP 3 GLU H 158 PRO H 159 0 3.34 CISPEP 4 SER L 7 PRO L 8 0 -5.46 CISPEP 5 SER L 95 PRO L 96 0 -0.29 CISPEP 6 TYR L 141 PRO L 142 0 -0.03 CRYST1 66.166 125.856 192.040 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015114 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005207 0.00000