HEADER UNKNOWN FUNCTION 31-OCT-18 6MXV TITLE THE CRYSTAL STRUCTURE OF A RHODANESE-LIKE FAMILY PROTEIN FROM TITLE 2 FRANCISELLA TULARENSIS SUBSP. TULARENSIS SCHU S4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODANESE-LIKE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. TULARENSIS SOURCE 3 (STRAIN SCHU S4 / SCHU 4); SOURCE 4 ORGANISM_TAXID: 177416; SOURCE 5 STRAIN: SCHU S4 / SCHU 4; SOURCE 6 GENE: FTT_1127; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS RHODANESE-LIKE FAMILY PROTEIN, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,T.SKARINA,R.DI LEO,A.SAVCHENKO,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 18-DEC-19 6MXV 1 REMARK REVDAT 1 21-NOV-18 6MXV 0 JRNL AUTH K.TAN,T.SKARINA,R.DI LEO,A.SAVCHENKO,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A RHODANESE-LIKE FAMILY PROTEIN JRNL TITL 2 FROM FRANCISELLA TULARENSIS SUBSP. TULARENSIS SCHU S4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 49107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6000 - 4.6659 0.99 2746 126 0.1619 0.1636 REMARK 3 2 4.6659 - 3.7039 0.99 2666 155 0.1328 0.1521 REMARK 3 3 3.7039 - 3.2358 1.00 2699 124 0.1522 0.1566 REMARK 3 4 3.2358 - 2.9400 0.99 2653 161 0.1685 0.1972 REMARK 3 5 2.9400 - 2.7293 0.99 2685 138 0.1696 0.2286 REMARK 3 6 2.7293 - 2.5684 0.99 2673 148 0.1639 0.2127 REMARK 3 7 2.5684 - 2.4398 0.98 2638 131 0.1700 0.1993 REMARK 3 8 2.4398 - 2.3336 0.99 2687 112 0.1515 0.1909 REMARK 3 9 2.3336 - 2.2437 0.99 2670 148 0.1511 0.1879 REMARK 3 10 2.2437 - 2.1663 0.99 2642 165 0.1564 0.1940 REMARK 3 11 2.1663 - 2.0986 0.99 2634 145 0.1476 0.1990 REMARK 3 12 2.0986 - 2.0386 0.98 2677 118 0.1556 0.1832 REMARK 3 13 2.0386 - 1.9849 0.97 2649 133 0.1551 0.1900 REMARK 3 14 1.9849 - 1.9365 0.98 2600 118 0.1548 0.1942 REMARK 3 15 1.9365 - 1.8925 0.96 2586 137 0.1677 0.2315 REMARK 3 16 1.8925 - 1.8522 0.93 2490 127 0.1787 0.2200 REMARK 3 17 1.8522 - 1.8151 0.86 2258 162 0.1844 0.2622 REMARK 3 18 1.8151 - 1.7809 0.74 1991 115 0.2052 0.2595 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4105 REMARK 3 ANGLE : 0.958 5518 REMARK 3 CHIRALITY : 0.059 591 REMARK 3 PLANARITY : 0.005 721 REMARK 3 DIHEDRAL : 6.822 3427 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2720 36.0544 31.4184 REMARK 3 T TENSOR REMARK 3 T11: 0.0751 T22: 0.0870 REMARK 3 T33: 0.0761 T12: -0.0035 REMARK 3 T13: -0.0043 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.9911 L22: 1.8471 REMARK 3 L33: 1.0777 L12: -0.1317 REMARK 3 L13: -0.4019 L23: 0.0434 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: 0.0389 S13: 0.0527 REMARK 3 S21: -0.1187 S22: 0.0210 S23: -0.0111 REMARK 3 S31: -0.0012 S32: -0.0134 S33: -0.0195 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7527 13.6052 21.8166 REMARK 3 T TENSOR REMARK 3 T11: 0.2141 T22: 0.1424 REMARK 3 T33: 0.1408 T12: 0.0060 REMARK 3 T13: 0.0124 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.0510 L22: 7.4695 REMARK 3 L33: 1.3811 L12: 3.8765 REMARK 3 L13: -1.6743 L23: -3.2275 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: 0.1282 S13: 0.1825 REMARK 3 S21: -0.3439 S22: 0.2347 S23: 0.3251 REMARK 3 S31: -0.1807 S32: -0.1464 S33: -0.1714 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1849 -1.3825 35.3390 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.1257 REMARK 3 T33: 0.1428 T12: -0.0005 REMARK 3 T13: 0.0141 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 2.0137 L22: 2.2421 REMARK 3 L33: 1.7087 L12: 0.2067 REMARK 3 L13: 0.9181 L23: 0.0739 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: -0.1451 S13: 0.0550 REMARK 3 S21: -0.0698 S22: -0.1140 S23: 0.3220 REMARK 3 S31: 0.0070 S32: -0.1907 S33: 0.0823 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4447 10.7368 44.2685 REMARK 3 T TENSOR REMARK 3 T11: 0.0960 T22: 0.0967 REMARK 3 T33: 0.0921 T12: 0.0007 REMARK 3 T13: 0.0168 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.0024 L22: 1.8079 REMARK 3 L33: 1.3710 L12: 0.2341 REMARK 3 L13: 0.4676 L23: 0.0876 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.0307 S13: -0.0698 REMARK 3 S21: 0.1009 S22: -0.0168 S23: 0.0032 REMARK 3 S31: 0.0446 S32: -0.0220 S33: 0.0204 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 120 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6898 33.3376 53.0145 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.1752 REMARK 3 T33: 0.1227 T12: 0.0131 REMARK 3 T13: 0.0051 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.4754 L22: 9.2425 REMARK 3 L33: 1.8095 L12: -3.6066 REMARK 3 L13: 1.6353 L23: -4.0796 REMARK 3 S TENSOR REMARK 3 S11: -0.1137 S12: -0.0645 S13: -0.0728 REMARK 3 S21: 0.4844 S22: 0.1395 S23: 0.2186 REMARK 3 S31: 0.0038 S32: -0.1270 S33: -0.0100 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4298 48.3248 37.4245 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.1126 REMARK 3 T33: 0.1172 T12: 0.0159 REMARK 3 T13: -0.0172 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 3.4065 L22: 1.7849 REMARK 3 L33: 2.0925 L12: 0.7778 REMARK 3 L13: 0.0160 L23: -0.4104 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: -0.1801 S13: 0.1435 REMARK 3 S21: 0.0525 S22: 0.0364 S23: 0.1653 REMARK 3 S31: -0.0186 S32: -0.1969 S33: 0.0025 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000237803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97818 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50307 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 48.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350 25%, 0.2M MGCL2, 0.1M TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.55400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 MSE B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 2 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 147 O HOH A 401 2.08 REMARK 500 OE1 GLU A 197 OG SER B 7 2.08 REMARK 500 O HOH B 412 O HOH B 461 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 149 CB CYS A 149 SG -0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 86 -156.84 -141.33 REMARK 500 ASN A 106 54.54 -91.64 REMARK 500 CYS A 211 -151.51 -134.98 REMARK 500 SER A 213 -7.37 -140.33 REMARK 500 CYS B 86 -157.33 -138.53 REMARK 500 CYS B 211 -152.41 -136.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 222 OE2 REMARK 620 2 HOH A 418 O 87.4 REMARK 620 3 HOH A 485 O 84.8 168.7 REMARK 620 4 HOH A 539 O 92.6 81.7 90.5 REMARK 620 5 HOH B 476 O 89.1 84.1 103.9 165.6 REMARK 620 6 HOH A 406 O 174.6 93.0 95.4 92.8 85.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 222 OE2 REMARK 620 2 HOH B 482 O 82.4 REMARK 620 3 HOH A 458 O 96.9 104.6 REMARK 620 4 HOH B 402 O 89.1 162.9 91.1 REMARK 620 5 HOH B 506 O 92.8 87.1 165.7 78.5 REMARK 620 6 HOH B 410 O 174.6 94.0 87.8 93.4 83.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 252 O REMARK 620 2 HOH B 522 O 88.9 REMARK 620 3 HOH B 507 O 91.8 84.1 REMARK 620 4 HOH B 424 O 175.0 86.8 90.4 REMARK 620 5 HOH A 466 O 88.5 89.8 173.9 88.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 12P B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP04647 RELATED DB: TARGETTRACK DBREF 6MXV A 1 252 UNP Q5NFU2 Q5NFU2_FRATT 1 252 DBREF 6MXV B 1 252 UNP Q5NFU2 Q5NFU2_FRATT 1 252 SEQRES 1 A 252 MSE LYS ILE MSE GLN HIS SER SER GLY PHE LEU LYS LEU SEQRES 2 A 252 VAL ASP ASP ALA LYS SER ARG ILE GLN GLU CYS SER VAL SEQRES 3 A 252 ASP ASP ILE GLN LYS MSE ASN GLU THR GLN THR LEU ASP SEQRES 4 A 252 GLY LEU LEU ILE ASP THR ARG GLU GLU SER GLU VAL ALA SEQRES 5 A 252 ASN GLY TYR ILE PRO ASN ALA ILE HIS LEU SER LYS GLY SEQRES 6 A 252 ILE ILE GLU SER ALA ILE GLU SER ALA VAL PRO ASN LYS SEQRES 7 A 252 ASN GLN LYS MSE TYR PHE TYR CYS GLY GLY GLY PHE ARG SEQRES 8 A 252 SER ALA LEU VAL ALA ASP LYS LEU ARG GLU MSE GLY TYR SEQRES 9 A 252 LYS ASN VAL ILE SER VAL ASP GLY GLY TRP ARG ALA TRP SEQRES 10 A 252 ASN ALA LYS GLY TYR PRO THR VAL SER PRO ASN GLN PHE SEQRES 11 A 252 ARG PRO ASN GLU PHE LEU LYS LEU VAL ASN ASN ALA LYS SEQRES 12 A 252 THR GLN ILE LYS GLU CYS SER THR THR GLU LEU TYR ASN SEQRES 13 A 252 LYS ILE ASN SER GLN GLU LEU ASP GLY ILE VAL PHE ASP SEQRES 14 A 252 VAL ARG GLU ASP SER GLU PHE ASN ARG PHE HIS ILE GLN SEQRES 15 A 252 GLY ALA THR HIS LEU SER LYS GLY GLN ILE GLU VAL LYS SEQRES 16 A 252 ILE GLU ASN LEU VAL PRO ASN LYS GLN GLN LYS ILE TYR SEQRES 17 A 252 LEU TYR CYS GLY SER GLY PHE ARG SER ALA LEU ALA ALA SEQRES 18 A 252 GLU SER LEU GLN HIS MSE GLY TYR THR ASN VAL VAL SER SEQRES 19 A 252 ILE ALA GLY GLY ILE LYS ASP TRP LEU ALA ASN ASN TYR SEQRES 20 A 252 PRO VAL SER GLN ASN SEQRES 1 B 252 MSE LYS ILE MSE GLN HIS SER SER GLY PHE LEU LYS LEU SEQRES 2 B 252 VAL ASP ASP ALA LYS SER ARG ILE GLN GLU CYS SER VAL SEQRES 3 B 252 ASP ASP ILE GLN LYS MSE ASN GLU THR GLN THR LEU ASP SEQRES 4 B 252 GLY LEU LEU ILE ASP THR ARG GLU GLU SER GLU VAL ALA SEQRES 5 B 252 ASN GLY TYR ILE PRO ASN ALA ILE HIS LEU SER LYS GLY SEQRES 6 B 252 ILE ILE GLU SER ALA ILE GLU SER ALA VAL PRO ASN LYS SEQRES 7 B 252 ASN GLN LYS MSE TYR PHE TYR CYS GLY GLY GLY PHE ARG SEQRES 8 B 252 SER ALA LEU VAL ALA ASP LYS LEU ARG GLU MSE GLY TYR SEQRES 9 B 252 LYS ASN VAL ILE SER VAL ASP GLY GLY TRP ARG ALA TRP SEQRES 10 B 252 ASN ALA LYS GLY TYR PRO THR VAL SER PRO ASN GLN PHE SEQRES 11 B 252 ARG PRO ASN GLU PHE LEU LYS LEU VAL ASN ASN ALA LYS SEQRES 12 B 252 THR GLN ILE LYS GLU CYS SER THR THR GLU LEU TYR ASN SEQRES 13 B 252 LYS ILE ASN SER GLN GLU LEU ASP GLY ILE VAL PHE ASP SEQRES 14 B 252 VAL ARG GLU ASP SER GLU PHE ASN ARG PHE HIS ILE GLN SEQRES 15 B 252 GLY ALA THR HIS LEU SER LYS GLY GLN ILE GLU VAL LYS SEQRES 16 B 252 ILE GLU ASN LEU VAL PRO ASN LYS GLN GLN LYS ILE TYR SEQRES 17 B 252 LEU TYR CYS GLY SER GLY PHE ARG SER ALA LEU ALA ALA SEQRES 18 B 252 GLU SER LEU GLN HIS MSE GLY TYR THR ASN VAL VAL SER SEQRES 19 B 252 ILE ALA GLY GLY ILE LYS ASP TRP LEU ALA ASN ASN TYR SEQRES 20 B 252 PRO VAL SER GLN ASN MODRES 6MXV MSE A 4 MET MODIFIED RESIDUE MODRES 6MXV MSE A 32 MET MODIFIED RESIDUE MODRES 6MXV MSE A 82 MET MODIFIED RESIDUE MODRES 6MXV MSE A 102 MET MODIFIED RESIDUE MODRES 6MXV MSE A 227 MET MODIFIED RESIDUE MODRES 6MXV MSE B 4 MET MODIFIED RESIDUE MODRES 6MXV MSE B 32 MET MODIFIED RESIDUE MODRES 6MXV MSE B 82 MET MODIFIED RESIDUE MODRES 6MXV MSE B 102 MET MODIFIED RESIDUE MODRES 6MXV MSE B 227 MET MODIFIED RESIDUE HET MSE A 4 8 HET MSE A 32 8 HET MSE A 82 8 HET MSE A 102 8 HET MSE A 227 8 HET MSE B 4 8 HET MSE B 32 8 HET MSE B 82 8 HET MSE B 102 8 HET MSE B 227 8 HET EDO A 301 4 HET MG A 302 1 HET PG4 A 303 13 HET PEG A 304 7 HET EDO B 301 4 HET MG B 302 1 HET MG B 303 1 HET PEG B 304 7 HET 12P B 305 37 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 12P DODECAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN 12P POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 MG 3(MG 2+) FORMUL 5 PG4 C8 H18 O5 FORMUL 6 PEG 2(C4 H10 O3) FORMUL 11 12P C24 H50 O13 FORMUL 12 HOH *346(H2 O) HELIX 1 AA1 SER A 7 SER A 19 1 13 HELIX 2 AA2 SER A 25 THR A 35 1 11 HELIX 3 AA3 GLU A 47 ALA A 52 1 6 HELIX 4 AA4 ILE A 66 VAL A 75 1 10 HELIX 5 AA5 PHE A 90 MSE A 102 1 13 HELIX 6 AA6 GLY A 112 LYS A 120 1 9 HELIX 7 AA7 SER A 126 PHE A 130 5 5 HELIX 8 AA8 PRO A 132 ILE A 146 1 15 HELIX 9 AA9 SER A 150 SER A 160 1 11 HELIX 10 AB1 GLU A 172 PHE A 179 1 8 HELIX 11 AB2 GLN A 191 VAL A 200 1 10 HELIX 12 AB3 GLY A 214 MSE A 227 1 14 HELIX 13 AB4 GLY A 237 ASN A 245 1 9 HELIX 14 AB5 SER B 7 SER B 19 1 13 HELIX 15 AB6 SER B 25 THR B 35 1 11 HELIX 16 AB7 GLU B 47 ALA B 52 1 6 HELIX 17 AB8 ILE B 66 VAL B 75 1 10 HELIX 18 AB9 PHE B 90 MSE B 102 1 13 HELIX 19 AC1 GLY B 112 LYS B 120 1 9 HELIX 20 AC2 SER B 126 PHE B 130 5 5 HELIX 21 AC3 PRO B 132 ILE B 146 1 15 HELIX 22 AC4 SER B 150 SER B 160 1 11 HELIX 23 AC5 GLU B 172 PHE B 179 1 8 HELIX 24 AC6 GLN B 191 VAL B 200 1 10 HELIX 25 AC7 GLY B 214 MSE B 227 1 14 HELIX 26 AC8 GLY B 237 ASN B 245 1 9 SHEET 1 AA1 5 GLN A 22 CYS A 24 0 SHEET 2 AA1 5 VAL A 107 VAL A 110 1 O SER A 109 N GLN A 22 SHEET 3 AA1 5 MSE A 82 TYR A 85 1 N PHE A 84 O ILE A 108 SHEET 4 AA1 5 LEU A 41 ASP A 44 1 N LEU A 41 O TYR A 83 SHEET 5 AA1 5 ALA A 59 HIS A 61 1 O ILE A 60 N ASP A 44 SHEET 1 AA2 5 LYS A 147 CYS A 149 0 SHEET 2 AA2 5 VAL A 232 ILE A 235 1 O SER A 234 N LYS A 147 SHEET 3 AA2 5 ILE A 207 TYR A 210 1 N LEU A 209 O VAL A 233 SHEET 4 AA2 5 ILE A 166 ASP A 169 1 N ILE A 166 O TYR A 208 SHEET 5 AA2 5 THR A 185 HIS A 186 1 O THR A 185 N VAL A 167 SHEET 1 AA3 5 GLN B 22 CYS B 24 0 SHEET 2 AA3 5 VAL B 107 VAL B 110 1 O SER B 109 N GLN B 22 SHEET 3 AA3 5 MSE B 82 TYR B 85 1 N PHE B 84 O ILE B 108 SHEET 4 AA3 5 LEU B 41 ASP B 44 1 N LEU B 41 O TYR B 83 SHEET 5 AA3 5 ALA B 59 HIS B 61 1 O ILE B 60 N ASP B 44 SHEET 1 AA4 5 LYS B 147 CYS B 149 0 SHEET 2 AA4 5 VAL B 232 ILE B 235 1 O SER B 234 N LYS B 147 SHEET 3 AA4 5 ILE B 207 TYR B 210 1 N LEU B 209 O VAL B 233 SHEET 4 AA4 5 ILE B 166 ASP B 169 1 N ILE B 166 O TYR B 208 SHEET 5 AA4 5 THR B 185 HIS B 186 1 O THR B 185 N VAL B 167 LINK C ILE A 3 N MSE A 4 1555 1555 1.33 LINK C MSE A 4 N GLN A 5 1555 1555 1.33 LINK C LYS A 31 N MSE A 32 1555 1555 1.32 LINK C MSE A 32 N ASN A 33 1555 1555 1.34 LINK C LYS A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N TYR A 83 1555 1555 1.33 LINK C GLU A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N GLY A 103 1555 1555 1.33 LINK OE2 GLU A 222 MG MG A 302 1555 1555 2.17 LINK C HIS A 226 N MSE A 227 1555 1555 1.32 LINK C MSE A 227 N GLY A 228 1555 1555 1.33 LINK C ILE B 3 N MSE B 4 1555 1555 1.33 LINK C MSE B 4 N GLN B 5 1555 1555 1.33 LINK C LYS B 31 N MSE B 32 1555 1555 1.33 LINK C MSE B 32 N ASN B 33 1555 1555 1.34 LINK C LYS B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N TYR B 83 1555 1555 1.33 LINK C GLU B 101 N MSE B 102 1555 1555 1.33 LINK C MSE B 102 N GLY B 103 1555 1555 1.33 LINK OE2 GLU B 222 MG MG B 303 1555 1555 2.16 LINK C HIS B 226 N MSE B 227 1555 1555 1.33 LINK C MSE B 227 N GLY B 228 1555 1555 1.33 LINK O ASN B 252 MG MG B 302 1555 1555 2.11 LINK MG MG A 302 O HOH A 418 1555 1555 2.06 LINK MG MG A 302 O HOH A 485 1555 1555 2.00 LINK MG MG A 302 O HOH A 539 1555 1555 2.08 LINK MG MG A 302 O HOH B 476 1555 1555 2.06 LINK MG MG B 302 O HOH B 522 1555 1555 2.14 LINK MG MG B 302 O HOH B 507 1555 1555 2.09 LINK MG MG B 302 O HOH B 424 1555 1555 2.17 LINK MG MG B 303 O HOH B 482 1555 1555 2.04 LINK MG MG B 303 O HOH A 458 1555 1555 1.99 LINK MG MG B 303 O HOH B 402 1555 1555 2.21 LINK MG MG A 302 O HOH A 406 1555 2546 2.09 LINK MG MG B 302 O HOH A 466 1555 2456 2.01 LINK MG MG B 303 O HOH B 506 1555 2557 2.24 LINK MG MG B 303 O HOH B 410 1555 2557 2.31 SITE 1 AC1 5 GLN A 30 ASN A 33 GLU A 34 TRP A 117 SITE 2 AC1 5 PRO A 123 SITE 1 AC2 5 GLU A 222 HOH A 418 HOH A 485 HOH A 539 SITE 2 AC2 5 HOH B 476 SITE 1 AC3 7 ILE A 60 HOH A 469 HOH A 532 HOH A 561 SITE 2 AC3 7 ILE B 60 HIS B 61 HOH B 498 SITE 1 AC4 7 ASP A 44 VAL A 51 TYR A 55 ALA A 59 SITE 2 AC4 7 ILE A 60 HIS A 61 SER B 73 SITE 1 AC5 5 GLN B 30 ASN B 33 GLU B 34 TRP B 117 SITE 2 AC5 5 PRO B 123 SITE 1 AC6 5 HIS B 180 ASN B 252 HOH B 424 HOH B 507 SITE 2 AC6 5 HOH B 522 SITE 1 AC7 4 HOH A 458 GLU B 222 HOH B 402 HOH B 482 SITE 1 AC8 4 VAL B 51 TYR B 55 ALA B 59 HIS B 61 SITE 1 AC9 12 PHE A 179 VAL A 249 GLN A 251 GLN B 22 SITE 2 AC9 12 CYS B 24 MSE B 32 LYS B 105 ASN B 106 SITE 3 AC9 12 VAL B 107 HOH B 438 HOH B 486 HOH B 533 CRYST1 48.721 111.108 50.339 90.00 93.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020525 0.000000 0.001250 0.00000 SCALE2 0.000000 0.009000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019902 0.00000