HEADER PROTEIN BINDING 31-OCT-18 6MXY TITLE STRUCTURE OF 53BP1 TANDEM TUDOR DOMAINS IN COMPLEX WITH SMALL MOLECULE TITLE 2 UNC3351 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TP53-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: P53BP1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53BP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTEV KEYWDS DNA DAMAGE RESPONSE, TUDOR DOMAIN, 53BP1, SMALL MOLECULE INHIBITOR, KEYWDS 2 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.CUI,M.V.BOTUYAN,G.MER REVDAT 2 11-OCT-23 6MXY 1 JRNL REMARK REVDAT 1 27-NOV-19 6MXY 0 JRNL AUTH G.CUI,M.V.BOTUYAN,P.DRANE,Q.HU,B.BRAGANTINI,J.R.THOMPSON, JRNL AUTH 2 D.J.SCHULLER,A.DETAPPE,M.T.PERFETTI,L.I.JAMES,S.V.FRYE, JRNL AUTH 3 D.CHOWDHURY,G.MER JRNL TITL AN AUTOINHIBITED STATE OF 53BP1 REVEALED BY SMALL MOLECULE JRNL TITL 2 ANTAGONISTS AND PROTEIN ENGINEERING. JRNL REF NAT COMMUN V. 14 6091 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37773238 JRNL DOI 10.1038/S41467-023-41821-6 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.4810 - 3.9035 1.00 2747 148 0.1651 0.1955 REMARK 3 2 3.9035 - 3.1031 1.00 2621 147 0.1548 0.1766 REMARK 3 3 3.1031 - 2.7122 1.00 2591 146 0.1689 0.1978 REMARK 3 4 2.7122 - 2.4649 1.00 2565 142 0.1678 0.2127 REMARK 3 5 2.4649 - 2.2885 1.00 2557 144 0.1711 0.2190 REMARK 3 6 2.2885 - 2.1538 1.00 2562 139 0.1706 0.1995 REMARK 3 7 2.1538 - 2.0461 1.00 2544 144 0.1778 0.2090 REMARK 3 8 2.0461 - 1.9571 1.00 2516 136 0.1852 0.2145 REMARK 3 9 1.9571 - 1.8819 1.00 2541 142 0.1985 0.2504 REMARK 3 10 1.8819 - 1.8170 1.00 2545 146 0.2081 0.2512 REMARK 3 11 1.8170 - 1.7602 1.00 2514 139 0.2081 0.2491 REMARK 3 12 1.7602 - 1.7099 1.00 2546 135 0.2124 0.2218 REMARK 3 13 1.7099 - 1.6650 1.00 2484 140 0.2242 0.2919 REMARK 3 14 1.6650 - 1.6244 0.97 2463 137 0.2493 0.2808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2083 REMARK 3 ANGLE : 1.463 2815 REMARK 3 CHIRALITY : 0.083 287 REMARK 3 PLANARITY : 0.011 358 REMARK 3 DIHEDRAL : 10.474 1233 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1481 THROUGH 1489 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2418 41.0692 -20.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.2599 T22: 0.1589 REMARK 3 T33: 0.1393 T12: -0.1083 REMARK 3 T13: 0.1107 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 5.3996 L22: 5.6172 REMARK 3 L33: 1.2427 L12: 1.6547 REMARK 3 L13: 1.6204 L23: -1.4691 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: 0.4455 S13: 0.7320 REMARK 3 S21: -0.4256 S22: -0.0433 S23: -0.2243 REMARK 3 S31: -0.6642 S32: 0.4207 S33: -0.0656 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1490 THROUGH 1500 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7216 23.2553 -10.1067 REMARK 3 T TENSOR REMARK 3 T11: 0.1579 T22: 0.0906 REMARK 3 T33: 0.0763 T12: -0.0859 REMARK 3 T13: 0.0138 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.5581 L22: 4.8674 REMARK 3 L33: 2.3557 L12: 1.7653 REMARK 3 L13: -0.8666 L23: -1.8496 REMARK 3 S TENSOR REMARK 3 S11: 0.0632 S12: -0.2218 S13: -0.2747 REMARK 3 S21: 0.2408 S22: -0.2825 S23: -0.4634 REMARK 3 S31: 0.2433 S32: 0.1023 S33: 0.2388 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1501 THROUGH 1519 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1711 31.6408 -11.1556 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.0442 REMARK 3 T33: 0.0289 T12: -0.1221 REMARK 3 T13: 0.0277 T23: -0.0710 REMARK 3 L TENSOR REMARK 3 L11: 0.6437 L22: 0.7727 REMARK 3 L33: 0.3095 L12: 0.3773 REMARK 3 L13: -0.3475 L23: 0.0544 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: -0.0653 S13: 0.0055 REMARK 3 S21: 0.0025 S22: 0.0049 S23: -0.0790 REMARK 3 S31: -0.0439 S32: 0.0865 S33: -0.0465 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1520 THROUGH 1554 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6154 24.1788 -12.7118 REMARK 3 T TENSOR REMARK 3 T11: 0.1209 T22: 0.0265 REMARK 3 T33: 0.0563 T12: -0.1354 REMARK 3 T13: 0.0268 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.2085 L22: 0.1774 REMARK 3 L33: 0.1994 L12: 0.0497 REMARK 3 L13: -0.0668 L23: 0.0385 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: -0.0242 S13: -0.0651 REMARK 3 S21: 0.0221 S22: -0.0170 S23: 0.0415 REMARK 3 S31: 0.0122 S32: 0.0256 S33: 0.0103 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1555 THROUGH 1563 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3947 25.9783 -22.1945 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.0762 REMARK 3 T33: 0.0775 T12: -0.0754 REMARK 3 T13: -0.0348 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.8996 L22: 4.2021 REMARK 3 L33: 3.6616 L12: -2.3286 REMARK 3 L13: 0.0966 L23: 0.5640 REMARK 3 S TENSOR REMARK 3 S11: 0.0603 S12: 0.1021 S13: 0.3259 REMARK 3 S21: -0.3997 S22: -0.0618 S23: -0.2589 REMARK 3 S31: -0.3137 S32: 0.1239 S33: 0.0039 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1564 THROUGH 1589 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3826 25.8670 -16.6395 REMARK 3 T TENSOR REMARK 3 T11: 0.0832 T22: -0.0010 REMARK 3 T33: 0.0542 T12: -0.1219 REMARK 3 T13: -0.0182 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.2242 L22: 1.0330 REMARK 3 L33: 1.2843 L12: -0.0189 REMARK 3 L13: 0.3606 L23: 0.0198 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: -0.0049 S13: 0.0604 REMARK 3 S21: 0.0126 S22: -0.0282 S23: 0.1848 REMARK 3 S31: -0.0604 S32: -0.0789 S33: 0.0540 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1590 THROUGH 1603 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2138 19.2690 -21.0389 REMARK 3 T TENSOR REMARK 3 T11: 0.1390 T22: 0.0548 REMARK 3 T33: 0.0970 T12: -0.0210 REMARK 3 T13: 0.0316 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 3.4387 L22: 2.9531 REMARK 3 L33: 3.2059 L12: 1.0568 REMARK 3 L13: 0.0207 L23: 0.1383 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.1737 S13: -0.4410 REMARK 3 S21: -0.1509 S22: -0.0106 S23: -0.0391 REMARK 3 S31: 0.3912 S32: -0.0638 S33: 0.0080 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1482 THROUGH 1509 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0879 22.6817 8.8195 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.0407 REMARK 3 T33: 0.0093 T12: -0.2676 REMARK 3 T13: 0.1197 T23: 0.0676 REMARK 3 L TENSOR REMARK 3 L11: 2.0234 L22: 1.8990 REMARK 3 L33: 1.3098 L12: -0.4295 REMARK 3 L13: -0.2827 L23: -0.4423 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: -0.1588 S13: -0.1305 REMARK 3 S21: 0.1463 S22: -0.1185 S23: -0.0618 REMARK 3 S31: -0.0667 S32: 0.1340 S33: 0.0635 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1510 THROUGH 1519 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9840 18.3304 9.6569 REMARK 3 T TENSOR REMARK 3 T11: 0.1827 T22: 0.2165 REMARK 3 T33: 0.0987 T12: -0.1406 REMARK 3 T13: -0.0246 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 0.1495 L22: 3.8357 REMARK 3 L33: 7.6376 L12: 0.3277 REMARK 3 L13: -1.0692 L23: -2.3509 REMARK 3 S TENSOR REMARK 3 S11: 0.1182 S12: -0.3412 S13: -0.1304 REMARK 3 S21: 0.5225 S22: -0.5080 S23: -0.5272 REMARK 3 S31: 0.0352 S32: 0.5951 S33: 0.4022 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1520 THROUGH 1531 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1477 22.1326 5.7977 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.1354 REMARK 3 T33: 0.0684 T12: -0.1526 REMARK 3 T13: 0.0190 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.8780 L22: 0.6100 REMARK 3 L33: 1.9597 L12: -0.1574 REMARK 3 L13: -0.4900 L23: 0.0850 REMARK 3 S TENSOR REMARK 3 S11: 0.1157 S12: -0.2464 S13: -0.0217 REMARK 3 S21: 0.2206 S22: -0.1220 S23: -0.0839 REMARK 3 S31: -0.0254 S32: 0.1891 S33: -0.0107 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1532 THROUGH 1542 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5413 30.9450 9.8029 REMARK 3 T TENSOR REMARK 3 T11: 0.2930 T22: 0.1530 REMARK 3 T33: 0.1468 T12: -0.1350 REMARK 3 T13: 0.1537 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.4437 L22: 1.5958 REMARK 3 L33: 2.1163 L12: 1.3697 REMARK 3 L13: -0.8021 L23: -1.4645 REMARK 3 S TENSOR REMARK 3 S11: 0.1086 S12: -0.0437 S13: 0.1907 REMARK 3 S21: 0.2606 S22: 0.1139 S23: 0.2792 REMARK 3 S31: -0.3581 S32: -0.0907 S33: -0.2419 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1543 THROUGH 1554 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7148 39.3691 -3.9498 REMARK 3 T TENSOR REMARK 3 T11: 0.2271 T22: 0.0762 REMARK 3 T33: 0.1338 T12: -0.0987 REMARK 3 T13: 0.0883 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 3.5387 L22: 1.4353 REMARK 3 L33: 5.5304 L12: 0.5879 REMARK 3 L13: -3.8395 L23: -0.1323 REMARK 3 S TENSOR REMARK 3 S11: 0.2099 S12: -0.2016 S13: 0.2327 REMARK 3 S21: 0.0961 S22: 0.0016 S23: 0.0396 REMARK 3 S31: -0.3918 S32: 0.2777 S33: -0.2103 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1555 THROUGH 1564 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6875 34.6297 0.9795 REMARK 3 T TENSOR REMARK 3 T11: 0.3170 T22: 0.1865 REMARK 3 T33: 0.4441 T12: -0.0665 REMARK 3 T13: 0.2266 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 6.8231 L22: 8.6056 REMARK 3 L33: 1.1864 L12: 6.8284 REMARK 3 L13: 1.7617 L23: 1.3731 REMARK 3 S TENSOR REMARK 3 S11: -0.1526 S12: 0.1857 S13: -0.1487 REMARK 3 S21: -0.1439 S22: 0.1087 S23: 0.2901 REMARK 3 S31: 0.0590 S32: -0.2229 S33: 0.0707 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1565 THROUGH 1574 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9159 33.4130 -1.9012 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.0944 REMARK 3 T33: 0.2807 T12: -0.0502 REMARK 3 T13: 0.1056 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 3.3676 L22: 7.0882 REMARK 3 L33: 3.6487 L12: 0.5778 REMARK 3 L13: 0.6536 L23: -0.4926 REMARK 3 S TENSOR REMARK 3 S11: -0.2337 S12: 0.1493 S13: 0.1649 REMARK 3 S21: -0.2601 S22: 0.2652 S23: 0.4212 REMARK 3 S31: -0.2077 S32: 0.0562 S33: 0.0010 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1575 THROUGH 1589 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9256 36.8735 -1.8076 REMARK 3 T TENSOR REMARK 3 T11: 0.2421 T22: 0.0311 REMARK 3 T33: 0.2203 T12: -0.0800 REMARK 3 T13: 0.1002 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.4594 L22: 1.9855 REMARK 3 L33: 2.2057 L12: -0.0527 REMARK 3 L13: 0.9106 L23: -0.3741 REMARK 3 S TENSOR REMARK 3 S11: -0.1210 S12: 0.0994 S13: 0.4282 REMARK 3 S21: -0.0741 S22: 0.1296 S23: 0.3363 REMARK 3 S31: -0.4322 S32: -0.0285 S33: -0.0385 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1590 THROUGH 1603 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7883 34.2405 14.6237 REMARK 3 T TENSOR REMARK 3 T11: 0.5212 T22: 0.2565 REMARK 3 T33: 0.1734 T12: -0.1777 REMARK 3 T13: 0.0880 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 3.1608 L22: 4.4761 REMARK 3 L33: 1.5676 L12: 1.9346 REMARK 3 L13: -1.0890 L23: -2.6480 REMARK 3 S TENSOR REMARK 3 S11: 0.1548 S12: -0.4789 S13: 0.0231 REMARK 3 S21: 0.7736 S22: -0.1021 S23: 0.2564 REMARK 3 S31: -0.2494 S32: 0.0055 S33: -0.0620 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000237653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6299 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37788 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.624 REMARK 200 RESOLUTION RANGE LOW (A) : 18.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.07398 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.74120 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2G3R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC, PH 5.6; REMARK 280 1M AMMONIUM PHOSPHATE MONOBASIC, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.07333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.14667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.14667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.07333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 1481 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B1482 CG ND1 CD2 CE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 1575 OE1 OE2 REMARK 480 GLN A 1577 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B1535 CB CYS B1535 SG -0.149 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1536 88.34 -156.10 REMARK 500 ASP B1536 103.21 -161.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K6M B 1701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1704 DBREF 6MXY A 1484 1603 UNP Q12888 TP53B_HUMAN 1484 1603 DBREF 6MXY B 1484 1603 UNP Q12888 TP53B_HUMAN 1484 1603 SEQADV 6MXY GLY A 1481 UNP Q12888 EXPRESSION TAG SEQADV 6MXY HIS A 1482 UNP Q12888 EXPRESSION TAG SEQADV 6MXY MET A 1483 UNP Q12888 EXPRESSION TAG SEQADV 6MXY GLY B 1481 UNP Q12888 EXPRESSION TAG SEQADV 6MXY HIS B 1482 UNP Q12888 EXPRESSION TAG SEQADV 6MXY MET B 1483 UNP Q12888 EXPRESSION TAG SEQRES 1 A 123 GLY HIS MET ASN SER PHE VAL GLY LEU ARG VAL VAL ALA SEQRES 2 A 123 LYS TRP SER SER ASN GLY TYR PHE TYR SER GLY LYS ILE SEQRES 3 A 123 THR ARG ASP VAL GLY ALA GLY LYS TYR LYS LEU LEU PHE SEQRES 4 A 123 ASP ASP GLY TYR GLU CYS ASP VAL LEU GLY LYS ASP ILE SEQRES 5 A 123 LEU LEU CYS ASP PRO ILE PRO LEU ASP THR GLU VAL THR SEQRES 6 A 123 ALA LEU SER GLU ASP GLU TYR PHE SER ALA GLY VAL VAL SEQRES 7 A 123 LYS GLY HIS ARG LYS GLU SER GLY GLU LEU TYR TYR SER SEQRES 8 A 123 ILE GLU LYS GLU GLY GLN ARG LYS TRP TYR LYS ARG MET SEQRES 9 A 123 ALA VAL ILE LEU SER LEU GLU GLN GLY ASN ARG LEU ARG SEQRES 10 A 123 GLU GLN TYR GLY LEU GLY SEQRES 1 B 123 GLY HIS MET ASN SER PHE VAL GLY LEU ARG VAL VAL ALA SEQRES 2 B 123 LYS TRP SER SER ASN GLY TYR PHE TYR SER GLY LYS ILE SEQRES 3 B 123 THR ARG ASP VAL GLY ALA GLY LYS TYR LYS LEU LEU PHE SEQRES 4 B 123 ASP ASP GLY TYR GLU CYS ASP VAL LEU GLY LYS ASP ILE SEQRES 5 B 123 LEU LEU CYS ASP PRO ILE PRO LEU ASP THR GLU VAL THR SEQRES 6 B 123 ALA LEU SER GLU ASP GLU TYR PHE SER ALA GLY VAL VAL SEQRES 7 B 123 LYS GLY HIS ARG LYS GLU SER GLY GLU LEU TYR TYR SER SEQRES 8 B 123 ILE GLU LYS GLU GLY GLN ARG LYS TRP TYR LYS ARG MET SEQRES 9 B 123 ALA VAL ILE LEU SER LEU GLU GLN GLY ASN ARG LEU ARG SEQRES 10 B 123 GLU GLN TYR GLY LEU GLY HET PO4 A1701 5 HET PO4 A1702 5 HET K6M B1701 42 HET PO4 B1702 5 HET PO4 B1703 5 HET PO4 B1704 5 HETNAM PO4 PHOSPHATE ION HETNAM K6M N-[3-(TERT-BUTYLAMINO)PROPYL]-3-(TRIFLUOROMETHYL) HETNAM 2 K6M BENZAMIDE FORMUL 3 PO4 5(O4 P 3-) FORMUL 5 K6M C15 H21 F3 N2 O FORMUL 9 HOH *348(H2 O) HELIX 1 AA1 SER A 1589 GLY A 1601 1 13 HELIX 2 AA2 SER B 1589 ARG B 1595 1 7 HELIX 3 AA3 LEU B 1596 GLY B 1601 1 6 SHEET 1 AA1 5 GLU A1524 LEU A1528 0 SHEET 2 AA1 5 LYS A1514 PHE A1519 -1 N LEU A1517 O CYS A1525 SHEET 3 AA1 5 PHE A1501 GLY A1511 -1 N LYS A1505 O LEU A1518 SHEET 4 AA1 5 ARG A1490 LYS A1494 -1 N ALA A1493 O TYR A1502 SHEET 5 AA1 5 ILE A1532 LEU A1533 -1 O LEU A1533 N VAL A1492 SHEET 1 AA2 5 GLN A1577 LYS A1582 0 SHEET 2 AA2 5 LEU A1568 LYS A1574 -1 N TYR A1570 O TYR A1581 SHEET 3 AA2 5 ALA A1555 LYS A1563 -1 N LYS A1559 O SER A1571 SHEET 4 AA2 5 GLU A1543 ALA A1546 -1 N VAL A1544 O GLY A1556 SHEET 5 AA2 5 VAL A1586 ILE A1587 -1 O ILE A1587 N THR A1545 SHEET 1 AA3 5 GLU B1524 LEU B1528 0 SHEET 2 AA3 5 LYS B1514 PHE B1519 -1 N TYR B1515 O VAL B1527 SHEET 3 AA3 5 TYR B1502 GLY B1511 -1 N LYS B1505 O LEU B1518 SHEET 4 AA3 5 ARG B1490 ALA B1493 -1 N ALA B1493 O TYR B1502 SHEET 5 AA3 5 ILE B1532 LEU B1533 -1 O LEU B1533 N VAL B1492 SHEET 1 AA4 5 GLN B1577 LYS B1582 0 SHEET 2 AA4 5 GLU B1567 LYS B1574 -1 N ILE B1572 O LYS B1579 SHEET 3 AA4 5 ALA B1555 GLU B1564 -1 N LYS B1559 O SER B1571 SHEET 4 AA4 5 GLU B1543 ALA B1546 -1 N VAL B1544 O GLY B1556 SHEET 5 AA4 5 VAL B1586 ILE B1587 -1 O ILE B1587 N THR B1545 CISPEP 1 ASP A 1536 PRO A 1537 0 0.34 CISPEP 2 ASP B 1536 PRO B 1537 0 -0.10 SITE 1 AC1 8 LYS A1582 MET A1584 ALA A1585 HOH A1840 SITE 2 AC1 8 HOH A1880 HOH A1904 ALA B1585 PO4 B1703 SITE 1 AC2 7 ARG A1508 VAL A1510 LYS A1514 LYS A1516 SITE 2 AC2 7 ASP A1526 HOH A1804 LYS B1563 SITE 1 AC3 10 TRP A1495 TYR A1502 ASP A1520 ASP A1521 SITE 2 AC3 10 MET A1584 TYR B1502 PHE B1519 ASP B1521 SITE 3 AC3 10 MET B1584 HOH B1824 SITE 1 AC4 10 ARG A1508 LYS A1516 GLU A1524 HOH A1815 SITE 2 AC4 10 ARG B1490 ASP B1536 LYS B1563 ARG B1583 SITE 3 AC4 10 HOH B1813 HOH B1828 SITE 1 AC5 9 TYR A1569 LYS A1582 PO4 A1701 HOH A1880 SITE 2 AC5 9 TYR B1569 LYS B1582 HOH B1808 HOH B1852 SITE 3 AC5 9 HOH B1873 SITE 1 AC6 6 LYS B1494 SER B1497 LEU B1528 LYS B1530 SITE 2 AC6 6 ASP B1531 HOH B1809 CRYST1 60.570 60.570 138.220 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016510 0.009532 0.000000 0.00000 SCALE2 0.000000 0.019064 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007235 0.00000