HEADER MEMBRANE PROTEIN 01-NOV-18 6MYI TITLE PLEUROTUS OSTREATUS OSTREOLYSINA COMPND MOL_ID: 1; COMPND 2 MOLECULE: OSTREOLYSIN A6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLEUROTUS OSTREATUS; SOURCE 3 ORGANISM_COMMON: OYSTER MUSHROOM; SOURCE 4 ORGANISM_TAXID: 5322; SOURCE 5 GENE: OLYA6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLYSS KEYWDS BETA-SANDWICH FOLD, MEMBRANE BINDING PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.R.TOMCHICK,A.RADHAKRISHNAN,S.ENDAPALLY REVDAT 4 13-MAR-24 6MYI 1 LINK REVDAT 3 04-DEC-19 6MYI 1 REMARK REVDAT 2 06-MAR-19 6MYI 1 JRNL REVDAT 1 13-FEB-19 6MYI 0 JRNL AUTH S.ENDAPALLY,D.FRIAS,M.GRZEMSKA,A.GAY,D.R.TOMCHICK, JRNL AUTH 2 A.RADHAKRISHNAN JRNL TITL MOLECULAR DISCRIMINATION BETWEEN TWO CONFORMATIONS OF JRNL TITL 2 SPHINGOMYELIN IN PLASMA MEMBRANES. JRNL REF CELL V. 176 1040 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 30712872 JRNL DOI 10.1016/J.CELL.2018.12.042 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 166128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.3190 - 2.4773 0.99 18183 161 0.1535 0.1688 REMARK 3 2 2.4773 - 1.9664 0.99 18039 159 0.1390 0.1557 REMARK 3 3 1.9664 - 1.7178 1.00 18088 160 0.1274 0.1549 REMARK 3 4 1.7178 - 1.5608 0.99 17990 159 0.1195 0.1444 REMARK 3 5 1.5608 - 1.4489 0.99 17894 158 0.1180 0.1374 REMARK 3 6 1.4489 - 1.3635 0.99 17924 159 0.1303 0.1369 REMARK 3 7 1.3635 - 1.2952 0.98 17767 156 0.1386 0.1675 REMARK 3 8 1.2952 - 1.2388 0.92 16731 148 0.1501 0.1776 REMARK 3 9 1.2388 - 1.1911 0.81 14628 125 0.1680 0.1869 REMARK 3 10 1.1911 - 1.1500 0.41 7433 66 0.2047 0.2691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 4438 REMARK 3 ANGLE : 1.154 6011 REMARK 3 CHIRALITY : 0.096 655 REMARK 3 PLANARITY : 0.007 768 REMARK 3 DIHEDRAL : 11.023 1598 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000237838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 205258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.91500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM CHLORIDE, 0.05 M TRIS REMARK 280 HYDROCHLORIDE, 0.15 M SODIUM CHLORIDE, 19% (W/V) PEG3350, 30% (W/ REMARK 280 V) ETHYLENE GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.16750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 TYR B 3 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY D 137 REMARK 465 ASN D 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 55 CD GLU A 55 OE1 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 87 -63.20 -90.72 REMARK 500 ASN A 109 102.70 -164.87 REMARK 500 VAL B 87 -65.62 -93.76 REMARK 500 ASP B 122 -167.26 -101.01 REMARK 500 SER C 65 97.73 -61.13 REMARK 500 ASP C 66 79.69 55.00 REMARK 500 ALA C 67 21.24 -155.97 REMARK 500 VAL C 87 -61.67 -93.55 REMARK 500 ASP D 54 -0.98 73.48 REMARK 500 VAL D 87 -64.38 -102.90 REMARK 500 ASP D 122 -153.49 -98.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 5 OE1 REMARK 620 2 PRO A 95 O 76.4 REMARK 620 3 ASN A 101 OD1 113.2 118.9 REMARK 620 4 GLY A 124 O 83.6 153.6 84.8 REMARK 620 5 HOH A 306 O 122.2 88.8 122.6 87.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 5 OE1 REMARK 620 2 PRO B 95 O 57.0 REMARK 620 3 ASN B 101 OD1 94.5 108.3 REMARK 620 4 GLY B 124 O 73.2 130.1 74.8 REMARK 620 5 HOH B 359 O 72.8 74.8 162.8 90.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO C 95 O REMARK 620 2 LYS C 99 O 102.7 REMARK 620 3 ASN C 101 OD1 117.4 98.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN D 5 OE1 REMARK 620 2 PRO D 95 O 64.5 REMARK 620 3 LYS D 99 O 158.3 93.8 REMARK 620 4 ASN D 101 OD1 93.4 115.8 96.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 203 DBREF 6MYI A 1 138 UNP P83467 OLYA6_PLEOS 1 138 DBREF 6MYI B 1 138 UNP P83467 OLYA6_PLEOS 1 138 DBREF 6MYI C 1 138 UNP P83467 OLYA6_PLEOS 1 138 DBREF 6MYI D 1 138 UNP P83467 OLYA6_PLEOS 1 138 SEQADV 6MYI GLY A 0 UNP P83467 EXPRESSION TAG SEQADV 6MYI SER A 62 UNP P83467 CYS 62 ENGINEERED MUTATION SEQADV 6MYI SER A 94 UNP P83467 CYS 94 ENGINEERED MUTATION SEQADV 6MYI GLY B 0 UNP P83467 EXPRESSION TAG SEQADV 6MYI SER B 62 UNP P83467 CYS 62 ENGINEERED MUTATION SEQADV 6MYI SER B 94 UNP P83467 CYS 94 ENGINEERED MUTATION SEQADV 6MYI GLY C 0 UNP P83467 EXPRESSION TAG SEQADV 6MYI SER C 62 UNP P83467 CYS 62 ENGINEERED MUTATION SEQADV 6MYI SER C 94 UNP P83467 CYS 94 ENGINEERED MUTATION SEQADV 6MYI GLY D 0 UNP P83467 EXPRESSION TAG SEQADV 6MYI SER D 62 UNP P83467 CYS 62 ENGINEERED MUTATION SEQADV 6MYI SER D 94 UNP P83467 CYS 94 ENGINEERED MUTATION SEQRES 1 A 139 GLY MET ALA TYR ALA GLN TRP VAL ILE ILE ILE ILE HIS SEQRES 2 A 139 ASN VAL GLY SER GLN ASP VAL LYS ILE LYS ASN LEU LYS SEQRES 3 A 139 ALA SER TRP GLY LYS LEU HIS ALA ASP GLY ASP LYS ASP SEQRES 4 A 139 ALA GLU VAL SER ALA SER ASN TYR GLU GLY LYS ILE VAL SEQRES 5 A 139 LYS PRO ASP GLU LYS LEU GLN ILE ASN ALA SER GLY ARG SEQRES 6 A 139 SER ASP ALA ALA GLU GLY THR THR GLY THR PHE ASP LEU SEQRES 7 A 139 VAL ASP PRO ALA ASP GLY ASP LYS GLN VAL ARG HIS PHE SEQRES 8 A 139 TYR TRP ASP SER PRO TRP GLY SER LYS THR ASN THR TRP SEQRES 9 A 139 THR VAL SER GLY SER ASN THR LYS TRP MET ILE GLU TYR SEQRES 10 A 139 SER GLY GLN ASN LEU ASP SER GLY ALA LEU GLY THR ILE SEQRES 11 A 139 THR VAL ASP THR LEU LYS LYS GLY ASN SEQRES 1 B 139 GLY MET ALA TYR ALA GLN TRP VAL ILE ILE ILE ILE HIS SEQRES 2 B 139 ASN VAL GLY SER GLN ASP VAL LYS ILE LYS ASN LEU LYS SEQRES 3 B 139 ALA SER TRP GLY LYS LEU HIS ALA ASP GLY ASP LYS ASP SEQRES 4 B 139 ALA GLU VAL SER ALA SER ASN TYR GLU GLY LYS ILE VAL SEQRES 5 B 139 LYS PRO ASP GLU LYS LEU GLN ILE ASN ALA SER GLY ARG SEQRES 6 B 139 SER ASP ALA ALA GLU GLY THR THR GLY THR PHE ASP LEU SEQRES 7 B 139 VAL ASP PRO ALA ASP GLY ASP LYS GLN VAL ARG HIS PHE SEQRES 8 B 139 TYR TRP ASP SER PRO TRP GLY SER LYS THR ASN THR TRP SEQRES 9 B 139 THR VAL SER GLY SER ASN THR LYS TRP MET ILE GLU TYR SEQRES 10 B 139 SER GLY GLN ASN LEU ASP SER GLY ALA LEU GLY THR ILE SEQRES 11 B 139 THR VAL ASP THR LEU LYS LYS GLY ASN SEQRES 1 C 139 GLY MET ALA TYR ALA GLN TRP VAL ILE ILE ILE ILE HIS SEQRES 2 C 139 ASN VAL GLY SER GLN ASP VAL LYS ILE LYS ASN LEU LYS SEQRES 3 C 139 ALA SER TRP GLY LYS LEU HIS ALA ASP GLY ASP LYS ASP SEQRES 4 C 139 ALA GLU VAL SER ALA SER ASN TYR GLU GLY LYS ILE VAL SEQRES 5 C 139 LYS PRO ASP GLU LYS LEU GLN ILE ASN ALA SER GLY ARG SEQRES 6 C 139 SER ASP ALA ALA GLU GLY THR THR GLY THR PHE ASP LEU SEQRES 7 C 139 VAL ASP PRO ALA ASP GLY ASP LYS GLN VAL ARG HIS PHE SEQRES 8 C 139 TYR TRP ASP SER PRO TRP GLY SER LYS THR ASN THR TRP SEQRES 9 C 139 THR VAL SER GLY SER ASN THR LYS TRP MET ILE GLU TYR SEQRES 10 C 139 SER GLY GLN ASN LEU ASP SER GLY ALA LEU GLY THR ILE SEQRES 11 C 139 THR VAL ASP THR LEU LYS LYS GLY ASN SEQRES 1 D 139 GLY MET ALA TYR ALA GLN TRP VAL ILE ILE ILE ILE HIS SEQRES 2 D 139 ASN VAL GLY SER GLN ASP VAL LYS ILE LYS ASN LEU LYS SEQRES 3 D 139 ALA SER TRP GLY LYS LEU HIS ALA ASP GLY ASP LYS ASP SEQRES 4 D 139 ALA GLU VAL SER ALA SER ASN TYR GLU GLY LYS ILE VAL SEQRES 5 D 139 LYS PRO ASP GLU LYS LEU GLN ILE ASN ALA SER GLY ARG SEQRES 6 D 139 SER ASP ALA ALA GLU GLY THR THR GLY THR PHE ASP LEU SEQRES 7 D 139 VAL ASP PRO ALA ASP GLY ASP LYS GLN VAL ARG HIS PHE SEQRES 8 D 139 TYR TRP ASP SER PRO TRP GLY SER LYS THR ASN THR TRP SEQRES 9 D 139 THR VAL SER GLY SER ASN THR LYS TRP MET ILE GLU TYR SEQRES 10 D 139 SER GLY GLN ASN LEU ASP SER GLY ALA LEU GLY THR ILE SEQRES 11 D 139 THR VAL ASP THR LEU LYS LYS GLY ASN HET NA A 201 1 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET NA B 201 1 HET EDO B 202 4 HET EDO B 203 4 HET NA C 201 1 HET EDO C 202 4 HET EDO C 203 4 HET EDO C 204 4 HET EDO C 205 4 HET NA D 201 1 HET EDO D 202 4 HET EDO D 203 4 HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 NA 4(NA 1+) FORMUL 6 EDO 11(C2 H6 O2) FORMUL 20 HOH *623(H2 O) HELIX 1 AA1 SER A 42 TYR A 46 5 5 HELIX 2 AA2 SER B 42 TYR B 46 5 5 HELIX 3 AA3 SER C 42 TYR C 46 5 5 HELIX 4 AA4 SER D 42 TYR D 46 5 5 HELIX 5 AA5 PRO D 80 GLY D 83 5 4 SHEET 1 AA1 6 ASP A 36 GLU A 40 0 SHEET 2 AA1 6 LYS A 30 ALA A 33 -1 N ALA A 33 O ALA A 39 SHEET 3 AA1 6 LYS A 56 SER A 62 -1 O SER A 62 N LYS A 30 SHEET 4 AA1 6 TRP A 6 ASN A 13 -1 N ILE A 9 O ILE A 59 SHEET 5 AA1 6 GLY A 127 LYS A 135 1 O VAL A 131 N ILE A 10 SHEET 6 AA1 6 TRP A 112 SER A 117 -1 N GLU A 115 O ASP A 132 SHEET 1 AA2 5 ILE A 50 VAL A 51 0 SHEET 2 AA2 5 VAL A 19 TRP A 28 -1 N VAL A 19 O VAL A 51 SHEET 3 AA2 5 THR A 71 VAL A 78 -1 O ASP A 76 N LYS A 22 SHEET 4 AA2 5 GLN A 86 SER A 94 -1 O VAL A 87 N LEU A 77 SHEET 5 AA2 5 THR A 102 SER A 106 -1 O SER A 106 N HIS A 89 SHEET 1 AA3 6 ASP B 36 GLU B 40 0 SHEET 2 AA3 6 LYS B 30 ALA B 33 -1 N ALA B 33 O ALA B 39 SHEET 3 AA3 6 LYS B 56 SER B 62 -1 O SER B 62 N LYS B 30 SHEET 4 AA3 6 TRP B 6 ASN B 13 -1 N ILE B 9 O ILE B 59 SHEET 5 AA3 6 GLY B 127 LYS B 135 1 O ILE B 129 N ILE B 8 SHEET 6 AA3 6 TRP B 112 SER B 117 -1 N GLU B 115 O ASP B 132 SHEET 1 AA4 5 ILE B 50 VAL B 51 0 SHEET 2 AA4 5 VAL B 19 TRP B 28 -1 N VAL B 19 O VAL B 51 SHEET 3 AA4 5 THR B 71 VAL B 78 -1 O ASP B 76 N LYS B 22 SHEET 4 AA4 5 GLN B 86 SER B 94 -1 O VAL B 87 N LEU B 77 SHEET 5 AA4 5 THR B 102 SER B 106 -1 O SER B 106 N HIS B 89 SHEET 1 AA5 6 ASP C 36 GLU C 40 0 SHEET 2 AA5 6 LYS C 30 ALA C 33 -1 N ALA C 33 O ALA C 39 SHEET 3 AA5 6 LYS C 56 SER C 62 -1 O SER C 62 N LYS C 30 SHEET 4 AA5 6 TRP C 6 ASN C 13 -1 N ILE C 11 O LEU C 57 SHEET 5 AA5 6 GLY C 127 LYS C 135 1 O VAL C 131 N ILE C 10 SHEET 6 AA5 6 TRP C 112 SER C 117 -1 N MET C 113 O LEU C 134 SHEET 1 AA6 5 ILE C 50 VAL C 51 0 SHEET 2 AA6 5 VAL C 19 TRP C 28 -1 N VAL C 19 O VAL C 51 SHEET 3 AA6 5 THR C 71 VAL C 78 -1 O ASP C 76 N LYS C 22 SHEET 4 AA6 5 GLN C 86 SER C 94 -1 O VAL C 87 N LEU C 77 SHEET 5 AA6 5 THR C 102 SER C 106 -1 O SER C 106 N HIS C 89 SHEET 1 AA7 6 ASP D 36 GLU D 40 0 SHEET 2 AA7 6 LYS D 30 ALA D 33 -1 N ALA D 33 O ALA D 39 SHEET 3 AA7 6 LYS D 56 SER D 62 -1 O SER D 62 N LYS D 30 SHEET 4 AA7 6 TRP D 6 ASN D 13 -1 N ILE D 9 O ILE D 59 SHEET 5 AA7 6 GLY D 127 LYS D 135 1 O VAL D 131 N ILE D 10 SHEET 6 AA7 6 TRP D 112 SER D 117 -1 N GLU D 115 O ASP D 132 SHEET 1 AA8 5 ILE D 50 VAL D 51 0 SHEET 2 AA8 5 VAL D 19 TRP D 28 -1 N VAL D 19 O VAL D 51 SHEET 3 AA8 5 THR D 71 VAL D 78 -1 O VAL D 78 N LYS D 20 SHEET 4 AA8 5 GLN D 86 SER D 94 -1 O SER D 94 N THR D 71 SHEET 5 AA8 5 THR D 102 SER D 106 -1 O THR D 104 N TYR D 91 LINK OE1 GLN A 5 NA NA A 201 1555 1555 2.52 LINK O PRO A 95 NA NA A 201 1555 1555 2.54 LINK OD1 ASN A 101 NA NA A 201 1555 1555 2.46 LINK O GLY A 124 NA NA A 201 1555 1555 2.67 LINK NA NA A 201 O HOH A 306 1555 1555 2.11 LINK OE1 GLN B 5 NA NA B 201 1555 1555 3.15 LINK O PRO B 95 NA NA B 201 1555 1555 2.94 LINK OD1 ASN B 101 NA NA B 201 1555 1555 2.65 LINK O GLY B 124 NA NA B 201 1555 1555 2.80 LINK NA NA B 201 O HOH B 359 1555 1555 3.09 LINK O PRO C 95 NA NA C 201 1555 1555 2.83 LINK O LYS C 99 NA NA C 201 1555 1555 2.83 LINK OD1 ASN C 101 NA NA C 201 1555 1555 2.73 LINK OE1 GLN D 5 NA NA D 201 1555 1555 3.12 LINK O PRO D 95 NA NA D 201 1555 1555 2.98 LINK O LYS D 99 NA NA D 201 1555 1555 3.16 LINK OD1 ASN D 101 NA NA D 201 1555 1555 2.69 SITE 1 AC1 6 GLN A 5 PRO A 95 LYS A 99 ASN A 101 SITE 2 AC1 6 GLY A 124 HOH A 306 SITE 1 AC2 9 GLU A 115 SER A 117 EDO A 204 HOH A 325 SITE 2 AC2 9 ARG C 88 VAL C 105 GLY C 107 EDO C 204 SITE 3 AC2 9 HOH C 312 SITE 1 AC3 6 ILE A 10 GLN A 58 HOH A 301 HOH A 305 SITE 2 AC3 6 HOH A 366 EDO B 202 SITE 1 AC4 6 GLU A 115 SER A 117 THR A 130 ASP A 132 SITE 2 AC4 6 EDO A 202 HOH A 360 SITE 1 AC5 6 GLN B 5 PRO B 95 LYS B 99 ASN B 101 SITE 2 AC5 6 GLY B 124 HOH B 359 SITE 1 AC6 6 EDO A 203 ARG B 88 VAL B 105 GLY B 107 SITE 2 AC6 6 HOH B 363 GLU D 115 SITE 1 AC7 5 GLY B 15 SER B 16 TRP B 96 GLY B 97 SITE 2 AC7 5 LYS B 135 SITE 1 AC8 6 GLN C 5 PRO C 95 GLY C 97 LYS C 99 SITE 2 AC8 6 ASN C 101 GLY C 124 SITE 1 AC9 6 TYR A 116 GLN A 119 THR C 104 VAL C 105 SITE 2 AC9 6 TYR C 116 HOH C 364 SITE 1 AD1 3 LYS C 20 PRO C 80 ASP C 84 SITE 1 AD2 7 EDO A 202 SER C 106 GLY C 107 HOH C 324 SITE 2 AD2 7 HOH C 382 ILE D 8 GLN D 58 SITE 1 AD3 6 TRP C 28 THR C 72 ASP C 93 HOH C 321 SITE 2 AD3 6 HOH C 375 HOH C 408 SITE 1 AD4 5 GLN D 5 PRO D 95 LYS D 99 ASN D 101 SITE 2 AD4 5 GLY D 124 SITE 1 AD5 3 GLN D 119 HOH D 318 HOH D 338 SITE 1 AD6 7 GLU B 115 HOH B 315 ARG D 88 VAL D 105 SITE 2 AD6 7 SER D 106 GLY D 107 HOH D 370 CRYST1 46.430 100.335 59.018 90.00 106.43 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021538 0.000000 0.006350 0.00000 SCALE2 0.000000 0.009967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017665 0.00000