HEADER LYASE 09-NOV-18 6N1M TITLE CRYSTAL STRUCTURE OF FUMARATE HYDRATASE CLASS II FROM LEGIONELLA TITLE 2 PNEUMOPHILA PHILADELPHIA 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUMARATE HYDRATASE CLASS II; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FUMARASE C,AEROBIC FUMARASE,IRON-INDEPENDENT FUMARASE; COMPND 5 EC: 4.2.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 3 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 6 ATCC: 33152; SOURCE 7 GENE: FUM, FUMC, LPG2937; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: LEPNA.01128.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6N1M 1 REMARK REVDAT 1 19-DEC-18 6N1M 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF FUMARATE HYDRATASE CLASS II FROM JRNL TITL 2 LEGIONELLA PNEUMOPHILA PHILADELPHIA 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3304) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 66275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3022 - 3.7351 1.00 4858 157 0.1320 0.1492 REMARK 3 2 3.7351 - 2.9648 1.00 4657 191 0.1321 0.1402 REMARK 3 3 2.9648 - 2.5901 1.00 4672 117 0.1417 0.1633 REMARK 3 4 2.5901 - 2.3533 1.00 4655 149 0.1446 0.1823 REMARK 3 5 2.3533 - 2.1846 1.00 4607 149 0.1373 0.1720 REMARK 3 6 2.1846 - 2.0558 1.00 4667 125 0.1395 0.1625 REMARK 3 7 2.0558 - 1.9529 1.00 4571 154 0.1498 0.1803 REMARK 3 8 1.9529 - 1.8679 1.00 4586 131 0.1450 0.1764 REMARK 3 9 1.8679 - 1.7960 1.00 4600 135 0.1460 0.1702 REMARK 3 10 1.7960 - 1.7340 1.00 4588 151 0.1500 0.1955 REMARK 3 11 1.7340 - 1.6798 1.00 4597 139 0.1582 0.1926 REMARK 3 12 1.6798 - 1.6317 1.00 4587 133 0.1649 0.1711 REMARK 3 13 1.6317 - 1.5888 0.99 4551 131 0.1731 0.2112 REMARK 3 14 1.5888 - 1.5500 0.89 4117 100 0.2317 0.2457 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3742 REMARK 3 ANGLE : 0.980 5113 REMARK 3 CHIRALITY : 0.060 588 REMARK 3 PLANARITY : 0.008 670 REMARK 3 DIHEDRAL : 13.863 2278 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4350 -16.9981 32.3806 REMARK 3 T TENSOR REMARK 3 T11: 0.1929 T22: 0.2183 REMARK 3 T33: 0.2039 T12: -0.0312 REMARK 3 T13: -0.0569 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 0.4818 L22: 1.7671 REMARK 3 L33: 1.4328 L12: -0.6523 REMARK 3 L13: -0.8760 L23: 0.9910 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.2495 S13: -0.1945 REMARK 3 S21: -0.1732 S22: -0.0724 S23: 0.3249 REMARK 3 S31: 0.1696 S32: -0.2881 S33: 0.0718 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6891 -16.8641 35.1647 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1628 REMARK 3 T33: 0.1309 T12: 0.0227 REMARK 3 T13: -0.0070 T23: -0.0717 REMARK 3 L TENSOR REMARK 3 L11: 1.0857 L22: 0.7410 REMARK 3 L33: 1.2462 L12: -0.2553 REMARK 3 L13: -0.3104 L23: 0.5561 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: 0.1414 S13: -0.0977 REMARK 3 S21: -0.0862 S22: 0.1103 S23: -0.0951 REMARK 3 S31: 0.1576 S32: 0.1975 S33: -0.0766 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8776 14.3133 58.1317 REMARK 3 T TENSOR REMARK 3 T11: 0.1067 T22: 0.1628 REMARK 3 T33: 0.1358 T12: -0.0627 REMARK 3 T13: 0.0268 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 0.2851 L22: 0.7209 REMARK 3 L33: 0.8381 L12: -0.1718 REMARK 3 L13: -0.0855 L23: 0.2983 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.0215 S13: 0.0662 REMARK 3 S21: -0.0165 S22: 0.0993 S23: -0.1009 REMARK 3 S31: -0.1736 S32: 0.2433 S33: -0.0958 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0127 -17.5959 50.1726 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.2639 REMARK 3 T33: 0.1589 T12: 0.0754 REMARK 3 T13: -0.0330 T23: -0.0997 REMARK 3 L TENSOR REMARK 3 L11: 1.1193 L22: 0.7298 REMARK 3 L33: 1.1121 L12: -0.0014 REMARK 3 L13: -0.5999 L23: 0.1790 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.1419 S13: -0.1481 REMARK 3 S21: 0.0229 S22: 0.1632 S23: -0.1792 REMARK 3 S31: 0.2658 S32: 0.3931 S33: -0.0554 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 272 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3827 20.4729 55.2901 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.1024 REMARK 3 T33: 0.1155 T12: -0.0302 REMARK 3 T13: 0.0190 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.6954 L22: 2.6689 REMARK 3 L33: 0.8793 L12: -0.5561 REMARK 3 L13: -0.0254 L23: -0.0980 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: 0.0806 S13: 0.1197 REMARK 3 S21: -0.1971 S22: 0.0214 S23: 0.0840 REMARK 3 S31: -0.2666 S32: 0.0357 S33: -0.0567 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 328 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7312 1.1975 53.5827 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: 0.0889 REMARK 3 T33: 0.0856 T12: -0.0078 REMARK 3 T13: 0.0027 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.3424 L22: 1.5891 REMARK 3 L33: 0.9503 L12: -0.1526 REMARK 3 L13: 0.0603 L23: -0.1707 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.0356 S13: 0.0090 REMARK 3 S21: -0.0540 S22: 0.0244 S23: -0.0056 REMARK 3 S31: -0.0332 S32: 0.0969 S33: -0.0469 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 387 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7495 39.8281 72.7959 REMARK 3 T TENSOR REMARK 3 T11: 0.3722 T22: 0.1710 REMARK 3 T33: 0.2718 T12: -0.0628 REMARK 3 T13: 0.0203 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 0.5296 L22: 1.6887 REMARK 3 L33: 3.1340 L12: -0.3980 REMARK 3 L13: -0.2560 L23: 1.8248 REMARK 3 S TENSOR REMARK 3 S11: -0.0992 S12: -0.1205 S13: 0.2190 REMARK 3 S21: 0.0212 S22: 0.1559 S23: -0.0961 REMARK 3 S31: -0.3347 S32: 0.2243 S33: -0.0591 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 432 THROUGH 463 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6797 46.5526 76.8598 REMARK 3 T TENSOR REMARK 3 T11: 0.4828 T22: 0.2106 REMARK 3 T33: 0.4268 T12: -0.0939 REMARK 3 T13: 0.0023 T23: -0.0706 REMARK 3 L TENSOR REMARK 3 L11: 1.3820 L22: 1.3108 REMARK 3 L33: 0.9316 L12: 0.5722 REMARK 3 L13: 0.1200 L23: 0.5597 REMARK 3 S TENSOR REMARK 3 S11: -0.2159 S12: -0.0094 S13: 0.6513 REMARK 3 S21: -0.2069 S22: 0.2878 S23: -0.3756 REMARK 3 S31: -0.4712 S32: 0.1609 S33: -0.0441 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66283 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 44.284 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.534 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.03 REMARK 200 R MERGE FOR SHELL (I) : 0.36800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: PDB ENTRY 3TV2 AS PER MORDA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICOLYTIC MCSG1 SCREEN, D1: 200MM REMARK 280 AMMONIUM SULFATE, 25% PEG 3350, 100MM BISTRIS/HCL PH 6.5: REMARK 280 LEPNA.01128.A.B1.PS38406 AT 17.9MG/ML: CRYO: 20% EG: TRAY REMARK 280 299629D1: PUCK IDJ7-6.A, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.11500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.04000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.34500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.11500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.04000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.34500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.11500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.04000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.34500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.11500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.04000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.34500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -295.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 128.69000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 128.69000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 694 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 784 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 825 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 828 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 981 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1013 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1034 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1078 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLN A 464 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 LYS A 426 CG CD CE NZ REMARK 470 ASN A 432 CG OD1 ND2 REMARK 470 LYS A 458 CG CD CE NZ REMARK 470 GLU A 463 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 217 O HOH A 601 2.11 REMARK 500 OE1 GLU A 15 O HOH A 602 2.13 REMARK 500 O HOH A 905 O HOH A 1079 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 601 O HOH A 601 4556 2.17 REMARK 500 O HOH A 624 O HOH A 975 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 95 -168.50 -126.78 REMARK 500 THR A 96 128.41 -35.79 REMARK 500 THR A 230 -137.22 47.12 REMARK 500 HIS A 271 42.46 -143.04 REMARK 500 PHE A 356 -127.16 55.62 REMARK 500 CYS A 387 -64.53 -138.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-LEPNA.01128.A RELATED DB: TARGETTRACK DBREF 6N1M A 1 464 UNP Q5ZRE5 Q5ZRE5_LEGPH 1 464 SEQADV 6N1M MET A -7 UNP Q5ZRE5 INITIATING METHIONINE SEQADV 6N1M ALA A -6 UNP Q5ZRE5 EXPRESSION TAG SEQADV 6N1M HIS A -5 UNP Q5ZRE5 EXPRESSION TAG SEQADV 6N1M HIS A -4 UNP Q5ZRE5 EXPRESSION TAG SEQADV 6N1M HIS A -3 UNP Q5ZRE5 EXPRESSION TAG SEQADV 6N1M HIS A -2 UNP Q5ZRE5 EXPRESSION TAG SEQADV 6N1M HIS A -1 UNP Q5ZRE5 EXPRESSION TAG SEQADV 6N1M HIS A 0 UNP Q5ZRE5 EXPRESSION TAG SEQRES 1 A 472 MET ALA HIS HIS HIS HIS HIS HIS MET ALA LYS THR ARG SEQRES 2 A 472 VAL GLU THR ASP SER MET GLY GLU ILE GLU VAL PRO SER SEQRES 3 A 472 ASP LYS TYR TRP GLY ALA GLN THR GLU ARG SER LEU HIS SEQRES 4 A 472 HIS PHE ASN ILE GLY LYS ASP ILE MET PRO ARG GLU VAL SEQRES 5 A 472 THR HIS ALA PHE GLY ILE LEU LYS LYS ALA ALA ALA LEU SEQRES 6 A 472 THR ASN LEU GLU LEU GLY LYS LEU PRO LYS ASP LYS ALA SEQRES 7 A 472 ASP LEU ILE VAL GLN ALA ALA GLU GLU VAL SER LYS GLY SEQRES 8 A 472 LEU LEU ASP GLU HIS PHE PRO LEU HIS VAL TRP GLN THR SEQRES 9 A 472 GLY SER GLY THR GLN SER ASN MET ASN ALA ASN GLU VAL SEQRES 10 A 472 ILE SER ASN ARG ALA ILE GLU LEU ALA GLY GLY THR LEU SEQRES 11 A 472 GLY SER LYS SER PRO ILE HIS PRO ASN ASP HIS VAL ASN SEQRES 12 A 472 MET SER GLN SER SER ASN ASP THR PHE PRO THR ALA MET SEQRES 13 A 472 HIS ILE ALA ALA ALA ILE ALA PHE ASN GLU LYS LEU LEU SEQRES 14 A 472 PRO ALA VAL ARG ASN LEU ARG HIS VAL PHE ALA ALA LYS SEQRES 15 A 472 MET ASP ALA PHE LYS ASN ILE ILE LYS ILE GLY ARG THR SEQRES 16 A 472 HIS LEU GLN ASP ALA VAL PRO LEU THR LEU GLY GLN GLU SEQRES 17 A 472 PHE SER GLY TYR VAL ALA GLN LEU ASP ALA CYS VAL HIS SEQRES 18 A 472 ARG LEU GLU GLU VAL LEU PRO GLU LEU TYR GLU LEU ALA SEQRES 19 A 472 ALA GLY GLY THR ALA VAL GLY THR GLY LEU ASN THR HIS SEQRES 20 A 472 PRO GLN PHE ALA VAL LYS VAL ALA GLU HIS ILE ALA LYS SEQRES 21 A 472 ILE THR LYS LEU PRO PHE VAL THR ALA PRO ASN LYS PHE SEQRES 22 A 472 ALA ALA LEU ALA SER HIS GLU PRO LEU VAL HIS ALA HIS SEQRES 23 A 472 GLY ALA MET LYS THR LEU ALA CYS ALA LEU MET LYS ILE SEQRES 24 A 472 ALA ASN ASP ILE ARG TRP LEU ALA SER GLY PRO ARG CYS SEQRES 25 A 472 GLY ILE GLY GLU LEU ILE ILE PRO GLU ASN GLU PRO GLY SEQRES 26 A 472 SER SER ILE MET PRO GLY LYS VAL ASN PRO THR GLN CYS SEQRES 27 A 472 GLU ALA MET THR MET VAL CYS ALA GLN VAL LEU GLY ASN SEQRES 28 A 472 ASP THR ALA VAL GLY ILE ALA ASP SER GLN GLY ASN PHE SEQRES 29 A 472 GLU LEU ASN VAL PHE LYS PRO VAL ILE ILE PHE ASN VAL SEQRES 30 A 472 LEU HIS SER LEU ASN LEU LEU ALA ASP SER CYS HIS SER SEQRES 31 A 472 PHE GLN GLU PHE CYS ALA GLU GLY ILE GLU PRO ASN GLN SEQRES 32 A 472 PRO VAL ILE ASP TYR TYR LEU HIS HIS SER LEU MET LEU SEQRES 33 A 472 VAL THR ALA LEU ASN GLN HIS ILE GLY TYR ASP LYS ALA SEQRES 34 A 472 ALA LYS ILE ALA LYS THR ALA HIS HIS ASP ASN ILE SER SEQRES 35 A 472 LEU GLN GLU ALA ALA VAL LYS LEU GLY ILE LEU THR ALA SEQRES 36 A 472 GLU GLN PHE ALA GLU PHE VAL LYS PRO GLU LYS MET ILE SEQRES 37 A 472 SER PRO GLU GLN HET SO4 A 501 5 HET SO4 A 502 5 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 HOH *488(H2 O) HELIX 1 AA1 GLY A 23 HIS A 31 1 9 HELIX 2 AA2 PRO A 41 LEU A 62 1 22 HELIX 3 AA3 PRO A 66 LYS A 82 1 17 HELIX 4 AA4 LEU A 85 PHE A 89 5 5 HELIX 5 AA5 GLY A 99 ALA A 118 1 20 HELIX 6 AA6 THR A 143 LYS A 159 1 17 HELIX 7 AA7 LYS A 159 PHE A 178 1 20 HELIX 8 AA8 LEU A 197 TYR A 223 1 27 HELIX 9 AA9 GLN A 241 LYS A 255 1 15 HELIX 10 AB1 ASN A 263 SER A 270 1 8 HELIX 11 AB2 HIS A 271 ALA A 299 1 29 HELIX 12 AB3 PRO A 327 GLN A 353 1 27 HELIX 13 AB4 PHE A 361 CYS A 387 1 27 HELIX 14 AB5 ALA A 388 ILE A 391 5 4 HELIX 15 AB6 ASN A 394 SER A 405 1 12 HELIX 16 AB7 LEU A 406 ALA A 411 5 6 HELIX 17 AB8 LEU A 412 GLY A 417 1 6 HELIX 18 AB9 GLY A 417 ASN A 432 1 16 HELIX 19 AC1 SER A 434 LEU A 442 1 9 HELIX 20 AC2 THR A 446 VAL A 454 1 9 HELIX 21 AC3 LYS A 455 MET A 459 5 5 SHEET 1 AA1 2 THR A 4 ASP A 9 0 SHEET 2 AA1 2 GLY A 12 PRO A 17 -1 O VAL A 16 N ARG A 5 SHEET 1 AA2 2 ILE A 182 THR A 187 0 SHEET 2 AA2 2 GLN A 190 THR A 196 -1 O LEU A 195 N LYS A 183 SHEET 1 AA3 2 GLU A 224 LEU A 225 0 SHEET 2 AA3 2 VAL A 259 THR A 260 1 O VAL A 259 N LEU A 225 SHEET 1 AA4 2 LEU A 309 ILE A 310 0 SHEET 2 AA4 2 GLU A 392 PRO A 393 -1 O GLU A 392 N ILE A 310 CISPEP 1 SER A 126 PRO A 127 0 9.62 CISPEP 2 GLY A 301 PRO A 302 0 10.52 SITE 1 AC1 10 SER A 140 ASN A 141 HIS A 188 LYS A 324 SITE 2 AC1 10 ASN A 326 HOH A 604 HOH A 635 HOH A 654 SITE 3 AC1 10 HOH A 685 HOH A 909 SITE 1 AC2 6 LYS A 69 SER A 126 PRO A 127 HIS A 133 SITE 2 AC2 6 HOH A 637 HOH A 651 SITE 1 AC3 3 HIS A 0 MET A 1 ALA A 2 SITE 1 AC4 4 SER A 18 ASP A 19 TYR A 21 GLU A 116 SITE 1 AC5 2 HIS A 46 HOH A 840 CRYST1 58.230 122.080 128.690 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017173 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007771 0.00000