HEADER CELL ADHESION 12-NOV-18 6N22 TITLE CRYSTAL STRUCTURE OF MOUSE PROTOCADHERIN-15 EC1-2 BAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOCADHERIN-15; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PROTEIN INCLUDES BIOTIN ACCEPTOR PEPTIDE (BAP) AND COMPND 6 EXPRESSION TAG GLNDIFEAQKIEWHELEHHHHHH SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PCDH15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS MECHANOTRANSDUCTION, CALCIUM BINDING PROTEIN, CELL ADHESION, HEARING, KEYWDS 2 STEREOCILIA, TIP LINK EXPDTA X-RAY DIFFRACTION AUTHOR Y.NARUI,M.SOTOMAYOR REVDAT 5 11-OCT-23 6N22 1 REMARK REVDAT 4 21-OCT-20 6N22 1 JRNL REVDAT 3 07-OCT-20 6N22 1 JRNL LINK REVDAT 2 18-DEC-19 6N22 1 REMARK REVDAT 1 13-NOV-19 6N22 0 JRNL AUTH D.CHOUDHARY,Y.NARUI,B.L.NEEL,L.N.WIMALASENA,C.F.KLANSECK, JRNL AUTH 2 P.DE-LA-TORRE,C.CHEN,R.ARAYA-SECCHI,E.TAMILSELVAN, JRNL AUTH 3 M.SOTOMAYOR JRNL TITL STRUCTURAL DETERMINANTS OF PROTOCADHERIN-15 MECHANICS AND JRNL TITL 2 FUNCTION IN HEARING AND BALANCE PERCEPTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 24837 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32963095 JRNL DOI 10.1073/PNAS.1920444117 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 887 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.18000 REMARK 3 B22 (A**2) : 1.18000 REMARK 3 B33 (A**2) : -3.83000 REMARK 3 B12 (A**2) : 0.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.100 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1879 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1722 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2567 ; 1.706 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4000 ; 1.250 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 234 ; 7.617 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;34.248 ;22.661 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 316 ;15.236 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.749 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 257 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2116 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 377 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 927 ; 2.394 ; 3.722 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 926 ; 2.390 ; 3.719 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1158 ; 3.863 ; 5.568 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1159 ; 3.862 ; 5.571 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 952 ; 3.428 ; 4.295 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 950 ; 3.417 ; 4.287 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1407 ; 5.696 ; 6.254 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1931 ; 7.471 ;43.266 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1930 ; 7.474 ;43.270 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 119 REMARK 3 RESIDUE RANGE : A 1001 A 1002 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1583 -46.0649 19.3213 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.0382 REMARK 3 T33: 0.0492 T12: 0.0099 REMARK 3 T13: -0.0443 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.4609 L22: 1.7608 REMARK 3 L33: 2.0598 L12: -0.6364 REMARK 3 L13: 0.1752 L23: -1.5194 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.0011 S13: -0.0262 REMARK 3 S21: -0.0343 S22: -0.1143 S23: -0.0003 REMARK 3 S31: -0.0289 S32: 0.1111 S33: 0.1108 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 236 REMARK 3 RESIDUE RANGE : A 1003 A 1003 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8646 -11.3674 -10.1726 REMARK 3 T TENSOR REMARK 3 T11: 0.0427 T22: 0.0471 REMARK 3 T33: 0.0461 T12: 0.0001 REMARK 3 T13: 0.0059 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.7414 L22: 1.5044 REMARK 3 L33: 1.9630 L12: -0.8287 REMARK 3 L13: 1.0439 L23: -1.2033 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: -0.0833 S13: -0.0224 REMARK 3 S21: -0.0297 S22: 0.1918 S23: -0.0415 REMARK 3 S31: -0.0720 S32: -0.0522 S33: -0.1377 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6N22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000237575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8330 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4APX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M CALCIUM CHLORIDE, 0.1 M SODIUM REMARK 280 ACETATE, 30% (V/V) MPD, PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.52000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.04000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.52000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.04000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 TYR A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 5 REMARK 465 GLY A 237 REMARK 465 ASP A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 ASN A 242 REMARK 465 ASP A 243 REMARK 465 ILE A 244 REMARK 465 PHE A 245 REMARK 465 GLU A 246 REMARK 465 ALA A 247 REMARK 465 GLN A 248 REMARK 465 LYS A 249 REMARK 465 ILE A 250 REMARK 465 GLU A 251 REMARK 465 TRP A 252 REMARK 465 HIS A 253 REMARK 465 GLU A 254 REMARK 465 LEU A 255 REMARK 465 GLU A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 181 O HOH A 1101 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 11 -10.95 91.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 27 OE1 REMARK 620 2 GLU A 28 OE2 95.1 REMARK 620 3 ASP A 83 OD1 83.3 86.3 REMARK 620 4 ASP A 85 OD2 84.8 179.8 93.8 REMARK 620 5 ASP A 121 OD2 95.8 75.1 161.2 104.8 REMARK 620 6 HOH A1139 O 164.4 98.6 90.1 81.6 95.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 27 OE2 REMARK 620 2 ASP A 85 OD1 103.3 REMARK 620 3 ASP A 85 OD2 92.1 53.1 REMARK 620 4 ASP A 118 OD1 81.2 73.6 123.1 REMARK 620 5 ARG A 119 O 87.0 153.0 152.8 83.6 REMARK 620 6 ASP A 121 OD1 87.2 129.1 77.3 156.7 75.5 REMARK 620 7 ASP A 159 OD1 165.2 89.5 90.0 109.8 84.6 78.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 120 OD1 REMARK 620 2 ASN A 122 O 98.3 REMARK 620 3 ASP A 157 OD1 157.4 93.5 REMARK 620 4 ASP A 157 OD2 147.1 87.1 52.3 REMARK 620 5 ASP A 159 OD2 81.8 82.9 80.6 131.1 REMARK 620 6 ASN A 163 O 85.9 172.8 84.6 86.3 103.5 REMARK 620 7 ASP A 215 OD2 67.8 89.5 131.8 79.9 147.3 86.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1003 DBREF 6N22 A 1 239 UNP Q99PJ1 PCD15_MOUSE 27 265 SEQADV 6N22 GLY A 240 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 LEU A 241 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 ASN A 242 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 ASP A 243 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 ILE A 244 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 PHE A 245 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 GLU A 246 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 ALA A 247 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 GLN A 248 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 LYS A 249 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 ILE A 250 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 GLU A 251 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 TRP A 252 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 HIS A 253 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 GLU A 254 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 LEU A 255 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 GLU A 256 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 HIS A 257 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 HIS A 258 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 HIS A 259 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 HIS A 260 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 HIS A 261 UNP Q99PJ1 EXPRESSION TAG SEQADV 6N22 HIS A 262 UNP Q99PJ1 EXPRESSION TAG SEQRES 1 A 262 GLN TYR ASP ASP ASP TRP GLN TYR GLU ASP CYS LYS LEU SEQRES 2 A 262 ALA ARG GLY GLY PRO PRO ALA THR ILE VAL ALA ILE ASP SEQRES 3 A 262 GLU GLU SER ARG ASN GLY THR ILE LEU VAL ASP ASN MET SEQRES 4 A 262 LEU ILE LYS GLY THR ALA GLY GLY PRO ASP PRO THR ILE SEQRES 5 A 262 GLU LEU SER LEU LYS ASP ASN VAL ASP TYR TRP VAL LEU SEQRES 6 A 262 LEU ASP PRO VAL LYS GLN MET LEU PHE LEU ASN SER THR SEQRES 7 A 262 GLY ARG VAL LEU ASP ARG ASP PRO PRO MET ASN ILE HIS SEQRES 8 A 262 SER ILE VAL VAL GLN VAL GLN CYS VAL ASN LYS LYS VAL SEQRES 9 A 262 GLY THR VAL ILE TYR HIS GLU VAL ARG ILE VAL VAL ARG SEQRES 10 A 262 ASP ARG ASN ASP ASN SER PRO THR PHE LYS HIS GLU SER SEQRES 11 A 262 TYR TYR ALA THR VAL ASN GLU LEU THR PRO VAL GLY THR SEQRES 12 A 262 THR ILE PHE THR GLY PHE SER GLY ASP ASN GLY ALA THR SEQRES 13 A 262 ASP ILE ASP ASP GLY PRO ASN GLY GLN ILE GLU TYR VAL SEQRES 14 A 262 ILE GLN TYR ASN PRO GLU ASP PRO THR SER ASN ASP THR SEQRES 15 A 262 PHE GLU ILE PRO LEU MET LEU THR GLY ASN VAL VAL LEU SEQRES 16 A 262 ARG LYS ARG LEU ASN TYR GLU ASP LYS THR ARG TYR TYR SEQRES 17 A 262 VAL ILE ILE GLN ALA ASN ASP ARG ALA GLN ASN LEU ASN SEQRES 18 A 262 GLU ARG ARG THR THR THR THR THR LEU THR VAL ASP VAL SEQRES 19 A 262 LEU ASP GLY ASP ASP GLY LEU ASN ASP ILE PHE GLU ALA SEQRES 20 A 262 GLN LYS ILE GLU TRP HIS GLU LEU GLU HIS HIS HIS HIS SEQRES 21 A 262 HIS HIS HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *49(H2 O) HELIX 1 AA1 ASN A 59 TYR A 62 5 4 HELIX 2 AA2 ASP A 160 GLY A 164 5 5 HELIX 3 AA3 THR A 178 THR A 182 1 5 HELIX 4 AA4 ASN A 219 ARG A 223 5 5 SHEET 1 AA1 4 THR A 21 ASP A 26 0 SHEET 2 AA1 4 THR A 106 ARG A 117 1 O ARG A 117 N ILE A 25 SHEET 3 AA1 4 SER A 92 ASN A 101 -1 N ILE A 93 O ILE A 114 SHEET 4 AA1 4 ILE A 52 LYS A 57 -1 N LYS A 57 O GLN A 96 SHEET 1 AA2 3 ILE A 34 VAL A 36 0 SHEET 2 AA2 3 MET A 72 LEU A 75 -1 O LEU A 73 N LEU A 35 SHEET 3 AA2 3 VAL A 64 ASP A 67 -1 N LEU A 65 O PHE A 74 SHEET 1 AA3 2 THR A 125 PHE A 126 0 SHEET 2 AA3 2 ALA A 155 THR A 156 -1 O THR A 156 N THR A 125 SHEET 1 AA4 4 TYR A 131 ASN A 136 0 SHEET 2 AA4 4 THR A 225 LEU A 235 1 O THR A 231 N TYR A 131 SHEET 3 AA4 4 ARG A 206 ASP A 215 -1 N TYR A 207 O VAL A 232 SHEET 4 AA4 4 ILE A 166 GLN A 171 -1 N VAL A 169 O GLN A 212 SHEET 1 AA5 3 THR A 144 PHE A 146 0 SHEET 2 AA5 3 VAL A 193 LEU A 195 -1 O VAL A 193 N ILE A 145 SHEET 3 AA5 3 PHE A 183 GLU A 184 -1 N GLU A 184 O VAL A 194 SSBOND 1 CYS A 11 CYS A 99 1555 1555 2.11 LINK OE1 GLU A 27 CA CA A1001 1555 1555 2.38 LINK OE2 GLU A 27 CA CA A1002 1555 1555 2.34 LINK OE2 GLU A 28 CA CA A1001 1555 1555 2.70 LINK OD1 ASP A 83 CA CA A1001 1555 1555 2.34 LINK OD2 ASP A 85 CA CA A1001 1555 1555 2.34 LINK OD1 ASP A 85 CA CA A1002 1555 1555 2.49 LINK OD2 ASP A 85 CA CA A1002 1555 1555 2.38 LINK OD1 ASP A 118 CA CA A1002 1555 1555 2.26 LINK O ARG A 119 CA CA A1002 1555 1555 2.36 LINK OD1 ASN A 120 CA CA A1003 1555 1555 2.36 LINK OD2 ASP A 121 CA CA A1001 1555 1555 2.36 LINK OD1 ASP A 121 CA CA A1002 1555 1555 2.39 LINK O ASN A 122 CA CA A1003 1555 1555 2.21 LINK OD1 ASP A 157 CA CA A1003 1555 1555 2.45 LINK OD2 ASP A 157 CA CA A1003 1555 1555 2.39 LINK OD1 ASP A 159 CA CA A1002 1555 1555 2.42 LINK OD2 ASP A 159 CA CA A1003 1555 1555 2.27 LINK O ASN A 163 CA CA A1003 1555 1555 2.31 LINK OD2 ASP A 215 CA CA A1003 1555 1555 2.45 LINK CA CA A1001 O HOH A1139 1555 1555 2.38 CISPEP 1 PRO A 86 PRO A 87 0 0.23 SITE 1 AC1 6 GLU A 27 GLU A 28 ASP A 83 ASP A 85 SITE 2 AC1 6 ASP A 121 HOH A1139 SITE 1 AC2 6 GLU A 27 ASP A 85 ASP A 118 ARG A 119 SITE 2 AC2 6 ASP A 121 ASP A 159 SITE 1 AC3 6 ASN A 120 ASN A 122 ASP A 157 ASP A 159 SITE 2 AC3 6 ASN A 163 ASP A 215 CRYST1 99.616 99.616 58.560 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010039 0.005796 0.000000 0.00000 SCALE2 0.000000 0.011592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017077 0.00000