HEADER TRANSFERASE 14-NOV-18 6N33 TITLE CRYSTAL STRUCTURE OF FMS KINASE DOMAIN WITH A SMALL MOLECULAR TITLE 2 INHIBITOR, PLX5622 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE COLONY-STIMULATING FACTOR 1 RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CSF-1 RECEPTOR,M-CSF-R,PROTO-ONCOGENE C-FMS; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSF1R, FMS; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CSF-1-R, FMS PROTO-ONCOGENE, C-FMS, CD115 ANTIGEN, KINASE, ATP- KEYWDS 2 BINDING, PLX5622, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG REVDAT 2 11-OCT-23 6N33 1 REMARK REVDAT 1 18-SEP-19 6N33 0 JRNL AUTH E.SPANGENBERG,P.L.SEVERSON,L.A.HOHSFIELD,J.CRAPSER,J.ZHANG, JRNL AUTH 2 E.A.BURTON,Y.ZHANG,W.SPEVAK,J.LIN,N.Y.PHAN,G.HABETS,A.RYMAR, JRNL AUTH 3 G.TSANG,J.WALTERS,M.NESPI,P.SINGH,S.BROOME,P.IBRAHIM, JRNL AUTH 4 C.ZHANG,G.BOLLAG,B.L.WEST,K.N.GREEN JRNL TITL SUSTAINED MICROGLIAL DEPLETION WITH CSF1R INHIBITOR IMPAIRS JRNL TITL 2 PARENCHYMAL PLAQUE DEVELOPMENT IN AN ALZHEIMER'S DISEASE JRNL TITL 3 MODEL. JRNL REF NAT COMMUN V. 10 3758 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31434879 JRNL DOI 10.1038/S41467-019-11674-Z REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.2463 - 4.3037 0.99 2661 112 0.1835 0.2071 REMARK 3 2 4.3037 - 3.4160 1.00 2449 144 0.1584 0.1885 REMARK 3 3 3.4160 - 2.9842 1.00 2407 144 0.1825 0.2330 REMARK 3 4 2.9842 - 2.7114 1.00 2419 138 0.1936 0.2583 REMARK 3 5 2.7114 - 2.5170 1.00 2391 121 0.1893 0.2460 REMARK 3 6 2.5170 - 2.3686 1.00 2400 134 0.1958 0.2373 REMARK 3 7 2.3686 - 2.2500 1.00 2365 126 0.2080 0.2723 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2376 REMARK 3 ANGLE : 0.955 3218 REMARK 3 CHIRALITY : 0.055 349 REMARK 3 PLANARITY : 0.007 409 REMARK 3 DIHEDRAL : 16.175 1407 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 566 THROUGH 584 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2708 -20.3867 -29.0099 REMARK 3 T TENSOR REMARK 3 T11: 0.3423 T22: 0.2956 REMARK 3 T33: 0.3109 T12: -0.0316 REMARK 3 T13: 0.0166 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.4590 L22: 2.6779 REMARK 3 L33: 2.6252 L12: 0.0946 REMARK 3 L13: -0.8594 L23: 1.4282 REMARK 3 S TENSOR REMARK 3 S11: 0.1265 S12: 0.1955 S13: -0.0762 REMARK 3 S21: 0.1414 S22: 0.0483 S23: -0.3508 REMARK 3 S31: -0.2129 S32: 0.5603 S33: -0.1660 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 585 THROUGH 610 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3006 -18.9019 -27.3577 REMARK 3 T TENSOR REMARK 3 T11: 0.2727 T22: 0.2576 REMARK 3 T33: 0.2321 T12: -0.0067 REMARK 3 T13: -0.0377 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 2.5069 L22: 3.5176 REMARK 3 L33: 3.5426 L12: 0.4852 REMARK 3 L13: -0.1867 L23: 2.2229 REMARK 3 S TENSOR REMARK 3 S11: 0.0848 S12: 0.0780 S13: -0.0026 REMARK 3 S21: 0.1638 S22: -0.0086 S23: 0.1539 REMARK 3 S31: 0.2427 S32: -0.2329 S33: 0.0038 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 611 THROUGH 640 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5039 -13.5759 -22.0886 REMARK 3 T TENSOR REMARK 3 T11: 0.2825 T22: 0.2988 REMARK 3 T33: 0.2984 T12: -0.0251 REMARK 3 T13: -0.0168 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.9142 L22: 3.0092 REMARK 3 L33: 1.7371 L12: 0.2912 REMARK 3 L13: -0.5493 L23: -0.3871 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: -0.0017 S13: 0.3747 REMARK 3 S21: 0.1599 S22: -0.0284 S23: -0.3263 REMARK 3 S31: -0.1958 S32: 0.1819 S33: -0.0347 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 641 THROUGH 751 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4781 -21.0059 -14.6458 REMARK 3 T TENSOR REMARK 3 T11: 0.2984 T22: 0.2484 REMARK 3 T33: 0.2931 T12: 0.0049 REMARK 3 T13: -0.0391 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.8613 L22: 0.7637 REMARK 3 L33: 0.4155 L12: -0.5799 REMARK 3 L13: -0.1649 L23: 0.3008 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: 0.0989 S13: -0.1254 REMARK 3 S21: 0.0061 S22: 0.0275 S23: 0.1102 REMARK 3 S31: 0.0988 S32: -0.2051 S33: 0.0232 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 752 THROUGH 772 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8166 -28.9992 -4.6693 REMARK 3 T TENSOR REMARK 3 T11: 0.3076 T22: 0.1806 REMARK 3 T33: 0.2382 T12: 0.0149 REMARK 3 T13: -0.0322 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 7.5550 L22: 1.1289 REMARK 3 L33: 1.8538 L12: -1.0704 REMARK 3 L13: -1.4128 L23: 0.6951 REMARK 3 S TENSOR REMARK 3 S11: 0.0567 S12: -0.1082 S13: -0.4482 REMARK 3 S21: -0.0979 S22: -0.0916 S23: -0.0199 REMARK 3 S31: 0.5361 S32: 0.0185 S33: 0.1055 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 773 THROUGH 823 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5756 -12.8017 -7.7863 REMARK 3 T TENSOR REMARK 3 T11: 0.2051 T22: 0.2251 REMARK 3 T33: 0.2386 T12: -0.0271 REMARK 3 T13: 0.0059 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.2672 L22: 1.7123 REMARK 3 L33: 2.2857 L12: -1.0120 REMARK 3 L13: -0.1202 L23: 0.0381 REMARK 3 S TENSOR REMARK 3 S11: 0.0849 S12: 0.0673 S13: 0.1585 REMARK 3 S21: -0.1464 S22: -0.0566 S23: -0.2214 REMARK 3 S31: -0.1950 S32: 0.0884 S33: -0.0241 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 824 THROUGH 914 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0783 -18.4232 6.1412 REMARK 3 T TENSOR REMARK 3 T11: 0.2321 T22: 0.2621 REMARK 3 T33: 0.2321 T12: -0.0126 REMARK 3 T13: -0.0354 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.2957 L22: 1.0631 REMARK 3 L33: 1.1720 L12: -0.6682 REMARK 3 L13: -0.4031 L23: -0.1665 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: -0.1904 S13: 0.0981 REMARK 3 S21: 0.1022 S22: 0.0042 S23: -0.1167 REMARK 3 S31: 0.1005 S32: 0.1124 S33: -0.0211 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 915 THROUGH 915 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2716 -39.0091 0.7189 REMARK 3 T TENSOR REMARK 3 T11: 1.0165 T22: 0.9153 REMARK 3 T33: 0.9914 T12: -0.1310 REMARK 3 T13: -0.3372 T23: -0.0911 REMARK 3 L TENSOR REMARK 3 L11: 1.9999 L22: 1.9996 REMARK 3 L33: 1.9999 L12: -1.4686 REMARK 3 L13: 1.9999 L23: 7.2128 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.2462 S13: -0.0120 REMARK 3 S21: -0.3134 S22: -0.0542 S23: -0.1470 REMARK 3 S31: 0.1373 S32: 0.0193 S33: 0.0302 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : ELVES REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 59.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4HW7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8K, 0.2M MGCL2 AND 0.1M TRIS, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.18450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.31000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.77675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.31000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.59225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.31000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.31000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 136.77675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.31000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.31000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.59225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.18450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1227 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 531 REMARK 465 LYS A 532 REMARK 465 LYS A 533 REMARK 465 GLY A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 GLY A 541 REMARK 465 GLN A 542 REMARK 465 LYS A 543 REMARK 465 PRO A 544 REMARK 465 LYS A 545 REMARK 465 TYR A 546 REMARK 465 GLN A 547 REMARK 465 VAL A 548 REMARK 465 ARG A 549 REMARK 465 TRP A 550 REMARK 465 LYS A 551 REMARK 465 ILE A 552 REMARK 465 ILE A 553 REMARK 465 GLU A 554 REMARK 465 SER A 555 REMARK 465 TYR A 556 REMARK 465 GLU A 557 REMARK 465 GLY A 558 REMARK 465 ASN A 559 REMARK 465 SER A 560 REMARK 465 TYR A 561 REMARK 465 THR A 562 REMARK 465 PHE A 563 REMARK 465 ILE A 564 REMARK 465 ASP A 565 REMARK 465 PRO A 735 REMARK 465 GLY A 736 REMARK 465 GLN A 737 REMARK 465 ASP A 738 REMARK 465 PRO A 739 REMARK 465 GLU A 740 REMARK 465 GLY A 741 REMARK 465 LEU A 742 REMARK 465 ASP A 743 REMARK 465 LYS A 744 REMARK 465 GLU A 745 REMARK 465 ASP A 746 REMARK 465 GLU A 916 REMARK 465 ASP A 917 REMARK 465 ARG A 918 REMARK 465 ARG A 919 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1110 O HOH A 1153 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 748 121.63 76.49 REMARK 500 ARG A 777 -3.56 82.11 REMARK 500 ASP A 778 45.91 -147.00 REMARK 500 ALA A 780 154.17 176.78 REMARK 500 THR A 787 -169.01 -102.39 REMARK 500 ASN A 884 -59.33 -29.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 622 A 1001 DBREF 6N33 A 542 919 UNP P07333 CSF1R_HUMAN 542 919 SEQADV 6N33 MET A 531 UNP P07333 INITIATING METHIONINE SEQADV 6N33 LYS A 532 UNP P07333 EXPRESSION TAG SEQADV 6N33 LYS A 533 UNP P07333 EXPRESSION TAG SEQADV 6N33 GLY A 534 UNP P07333 EXPRESSION TAG SEQADV 6N33 HIS A 535 UNP P07333 EXPRESSION TAG SEQADV 6N33 HIS A 536 UNP P07333 EXPRESSION TAG SEQADV 6N33 HIS A 537 UNP P07333 EXPRESSION TAG SEQADV 6N33 HIS A 538 UNP P07333 EXPRESSION TAG SEQADV 6N33 HIS A 539 UNP P07333 EXPRESSION TAG SEQADV 6N33 HIS A 540 UNP P07333 EXPRESSION TAG SEQADV 6N33 GLY A 541 UNP P07333 EXPRESSION TAG SEQADV 6N33 THR A 667 UNP P07333 CYS 667 ENGINEERED MUTATION SEQADV 6N33 A UNP P07333 GLY 696 DELETION SEQADV 6N33 A UNP P07333 VAL 697 DELETION SEQADV 6N33 A UNP P07333 ASP 698 DELETION SEQADV 6N33 A UNP P07333 TYR 699 DELETION SEQADV 6N33 A UNP P07333 LYS 700 DELETION SEQADV 6N33 A UNP P07333 ASN 701 DELETION SEQADV 6N33 A UNP P07333 ILE 702 DELETION SEQADV 6N33 A UNP P07333 HIS 703 DELETION SEQADV 6N33 A UNP P07333 LEU 704 DELETION SEQADV 6N33 A UNP P07333 GLU 705 DELETION SEQADV 6N33 A UNP P07333 LYS 706 DELETION SEQADV 6N33 A UNP P07333 LYS 707 DELETION SEQADV 6N33 A UNP P07333 TYR 708 DELETION SEQADV 6N33 A UNP P07333 VAL 709 DELETION SEQADV 6N33 A UNP P07333 ARG 710 DELETION SEQADV 6N33 A UNP P07333 ARG 711 DELETION SEQADV 6N33 A UNP P07333 ASP 712 DELETION SEQADV 6N33 A UNP P07333 SER 713 DELETION SEQADV 6N33 A UNP P07333 GLY 714 DELETION SEQADV 6N33 A UNP P07333 PHE 715 DELETION SEQADV 6N33 A UNP P07333 SER 716 DELETION SEQADV 6N33 A UNP P07333 SER 717 DELETION SEQADV 6N33 A UNP P07333 GLN 718 DELETION SEQADV 6N33 A UNP P07333 GLY 719 DELETION SEQADV 6N33 A UNP P07333 VAL 720 DELETION SEQADV 6N33 A UNP P07333 ASP 721 DELETION SEQADV 6N33 A UNP P07333 THR 722 DELETION SEQADV 6N33 A UNP P07333 TYR 723 DELETION SEQADV 6N33 A UNP P07333 VAL 724 DELETION SEQADV 6N33 A UNP P07333 GLU 725 DELETION SEQADV 6N33 A UNP P07333 MET 726 DELETION SEQADV 6N33 A UNP P07333 ARG 727 DELETION SEQADV 6N33 A UNP P07333 PRO 728 DELETION SEQADV 6N33 A UNP P07333 VAL 729 DELETION SEQADV 6N33 A UNP P07333 SER 730 DELETION SEQADV 6N33 A UNP P07333 THR 731 DELETION SEQADV 6N33 A UNP P07333 SER 732 DELETION SEQADV 6N33 A UNP P07333 SER 733 DELETION SEQADV 6N33 A UNP P07333 ASN 734 DELETION SEQADV 6N33 A UNP P07333 ASP 735 DELETION SEQADV 6N33 A UNP P07333 SER 736 DELETION SEQADV 6N33 A UNP P07333 PHE 737 DELETION SEQADV 6N33 A UNP P07333 SER 738 DELETION SEQADV 6N33 A UNP P07333 GLU 739 DELETION SEQADV 6N33 A UNP P07333 GLN 740 DELETION SEQADV 6N33 A UNP P07333 ASP 741 DELETION SEQADV 6N33 SER A 830 UNP P07333 CYS 830 ENGINEERED MUTATION SEQADV 6N33 THR A 907 UNP P07333 CYS 907 ENGINEERED MUTATION SEQRES 1 A 343 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS GLY GLN LYS SEQRES 2 A 343 PRO LYS TYR GLN VAL ARG TRP LYS ILE ILE GLU SER TYR SEQRES 3 A 343 GLU GLY ASN SER TYR THR PHE ILE ASP PRO THR GLN LEU SEQRES 4 A 343 PRO TYR ASN GLU LYS TRP GLU PHE PRO ARG ASN ASN LEU SEQRES 5 A 343 GLN PHE GLY LYS THR LEU GLY ALA GLY ALA PHE GLY LYS SEQRES 6 A 343 VAL VAL GLU ALA THR ALA PHE GLY LEU GLY LYS GLU ASP SEQRES 7 A 343 ALA VAL LEU LYS VAL ALA VAL LYS MET LEU LYS SER THR SEQRES 8 A 343 ALA HIS ALA ASP GLU LYS GLU ALA LEU MET SER GLU LEU SEQRES 9 A 343 LYS ILE MET SER HIS LEU GLY GLN HIS GLU ASN ILE VAL SEQRES 10 A 343 ASN LEU LEU GLY ALA CYS THR HIS GLY GLY PRO VAL LEU SEQRES 11 A 343 VAL ILE THR GLU TYR CYS THR TYR GLY ASP LEU LEU ASN SEQRES 12 A 343 PHE LEU ARG ARG LYS ALA GLU ALA MET LEU GLY PRO SER SEQRES 13 A 343 LEU SER PRO GLY GLN ASP PRO GLU GLY LEU ASP LYS GLU SEQRES 14 A 343 ASP GLY ARG PRO LEU GLU LEU ARG ASP LEU LEU HIS PHE SEQRES 15 A 343 SER SER GLN VAL ALA GLN GLY MET ALA PHE LEU ALA SER SEQRES 16 A 343 LYS ASN CYS ILE HIS ARG ASP VAL ALA ALA ARG ASN VAL SEQRES 17 A 343 LEU LEU THR ASN GLY HIS VAL ALA LYS ILE GLY ASP PHE SEQRES 18 A 343 GLY LEU ALA ARG ASP ILE MET ASN ASP SER ASN TYR ILE SEQRES 19 A 343 VAL LYS GLY ASN ALA ARG LEU PRO VAL LYS TRP MET ALA SEQRES 20 A 343 PRO GLU SER ILE PHE ASP SER VAL TYR THR VAL GLN SER SEQRES 21 A 343 ASP VAL TRP SER TYR GLY ILE LEU LEU TRP GLU ILE PHE SEQRES 22 A 343 SER LEU GLY LEU ASN PRO TYR PRO GLY ILE LEU VAL ASN SEQRES 23 A 343 SER LYS PHE TYR LYS LEU VAL LYS ASP GLY TYR GLN MET SEQRES 24 A 343 ALA GLN PRO ALA PHE ALA PRO LYS ASN ILE TYR SER ILE SEQRES 25 A 343 MET GLN ALA CYS TRP ALA LEU GLU PRO THR HIS ARG PRO SEQRES 26 A 343 THR PHE GLN GLN ILE THR SER PHE LEU GLN GLU GLN ALA SEQRES 27 A 343 GLN GLU ASP ARG ARG HET 622 A1001 29 HETNAM 622 6-FLUORO-N-[(5-FLUORO-2-METHOXYPYRIDIN-3-YL)METHYL]-5- HETNAM 2 622 [(5-METHYL-1H-PYRROLO[2,3-B]PYRIDIN-3-YL) HETNAM 3 622 METHYL]PYRIDIN-2-AMINE FORMUL 2 622 C21 H19 F2 N5 O FORMUL 3 HOH *133(H2 O) HELIX 1 AA1 ASN A 572 GLU A 576 5 5 HELIX 2 AA2 PRO A 578 ASN A 580 5 3 HELIX 3 AA3 HIS A 623 GLY A 641 1 19 HELIX 4 AA4 LEU A 671 GLY A 684 1 14 HELIX 5 AA5 GLU A 751 LYS A 772 1 22 HELIX 6 AA6 ALA A 780 ARG A 782 5 3 HELIX 7 AA7 ASN A 788 HIS A 790 5 3 HELIX 8 AA8 PHE A 797 ARG A 801 5 5 HELIX 9 AA9 ASP A 802 ASP A 806 5 5 HELIX 10 AB1 PRO A 818 MET A 822 5 5 HELIX 11 AB2 ALA A 823 SER A 830 1 8 HELIX 12 AB3 THR A 833 SER A 850 1 18 HELIX 13 AB4 ASN A 862 ASP A 871 1 10 HELIX 14 AB5 PRO A 882 TRP A 893 1 12 HELIX 15 AB6 GLU A 896 ARG A 900 5 5 HELIX 16 AB7 THR A 902 GLN A 915 1 14 SHEET 1 AA1 5 LEU A 582 ALA A 590 0 SHEET 2 AA1 5 GLY A 594 LEU A 604 -1 O GLU A 598 N GLY A 585 SHEET 3 AA1 5 ALA A 609 LEU A 618 -1 O VAL A 613 N ALA A 599 SHEET 4 AA1 5 LEU A 660 GLU A 664 -1 O THR A 663 N ALA A 614 SHEET 5 AA1 5 LEU A 649 CYS A 653 -1 N LEU A 650 O ILE A 662 SHEET 1 AA2 3 GLY A 669 ASP A 670 0 SHEET 2 AA2 3 VAL A 784 LEU A 786 -1 O LEU A 786 N GLY A 669 SHEET 3 AA2 3 ALA A 792 ILE A 794 -1 O LYS A 793 N LEU A 785 SHEET 1 AA3 2 ILE A 810 LYS A 812 0 SHEET 2 AA3 2 ALA A 815 LEU A 817 -1 O LEU A 817 N ILE A 810 SITE 1 AC1 12 ALA A 614 LYS A 616 GLU A 633 MET A 637 SITE 2 AC1 12 THR A 663 GLU A 664 CYS A 666 LEU A 785 SITE 3 AC1 12 ILE A 794 GLY A 795 ASP A 796 PHE A 797 CRYST1 62.620 62.620 182.369 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015969 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005483 0.00000