HEADER TRANSFERASE 14-NOV-18 6N39 TITLE CRYSTAL STRUCTURE OF AN DEPHOSPHO-COA KINASE COAE FROM MYCOBACTERIUM TITLE 2 PARATUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEPHOSPHO-COA KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEPHOSPHOCOENZYME A KINASE; COMPND 5 EC: 2.7.1.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM PARATUBERCULOSIS (STRAIN ATCC SOURCE 3 BAA-968 / K-10); SOURCE 4 ORGANISM_TAXID: 262316; SOURCE 5 STRAIN: ATCC BAA-968 / K-10; SOURCE 6 GENE: COAE, MAP_1326; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MYPA.19484.A.B1 KEYWDS SSGCID, DEPHOSPHO-COA KINASE, COAE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 13-MAR-24 6N39 1 REMARK REVDAT 1 21-NOV-18 6N39 0 JRNL AUTH S.J.MAYCLIN,R.M.IRWIN,J.ABENDROTH,P.S.HORANYI,D.D.LORIMER, JRNL AUTH 2 T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF AN DEPHOSPHO-COA KINASE COAE FROM JRNL TITL 2 MYCOBACTERIUM PARATUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0000 - 5.1781 1.00 3005 154 0.1723 0.1843 REMARK 3 2 5.1781 - 4.1115 1.00 2845 139 0.1409 0.1646 REMARK 3 3 4.1115 - 3.5922 1.00 2787 151 0.1511 0.1769 REMARK 3 4 3.5922 - 3.2639 1.00 2779 142 0.1717 0.1906 REMARK 3 5 3.2639 - 3.0301 1.00 2748 153 0.1883 0.1990 REMARK 3 6 3.0301 - 2.8515 1.00 2766 136 0.1970 0.2376 REMARK 3 7 2.8515 - 2.7087 1.00 2761 129 0.1983 0.2027 REMARK 3 8 2.7087 - 2.5908 1.00 2706 154 0.1831 0.2306 REMARK 3 9 2.5908 - 2.4911 1.00 2737 126 0.1747 0.2293 REMARK 3 10 2.4911 - 2.4052 1.00 2736 129 0.1824 0.2228 REMARK 3 11 2.4052 - 2.3300 1.00 2711 144 0.1678 0.2018 REMARK 3 12 2.3300 - 2.2634 1.00 2704 145 0.1773 0.1945 REMARK 3 13 2.2634 - 2.2038 1.00 2712 138 0.1810 0.2082 REMARK 3 14 2.2038 - 2.1500 1.00 2689 141 0.1896 0.2097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.8997 -3.1663 42.7445 REMARK 3 T TENSOR REMARK 3 T11: 0.6203 T22: 0.2869 REMARK 3 T33: 0.3069 T12: 0.0488 REMARK 3 T13: 0.0137 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 3.5438 L22: 3.2146 REMARK 3 L33: 7.3660 L12: -1.0705 REMARK 3 L13: 0.6795 L23: -1.4739 REMARK 3 S TENSOR REMARK 3 S11: -0.0876 S12: -0.3684 S13: -0.2134 REMARK 3 S21: 1.0349 S22: 0.2056 S23: -0.1634 REMARK 3 S31: 0.3427 S32: 0.4984 S33: -0.1104 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.1091 -10.4099 66.2065 REMARK 3 T TENSOR REMARK 3 T11: 1.5758 T22: 1.0106 REMARK 3 T33: 1.1013 T12: -0.3439 REMARK 3 T13: -0.2814 T23: 0.2594 REMARK 3 L TENSOR REMARK 3 L11: 4.7709 L22: 4.3499 REMARK 3 L33: 6.1797 L12: -1.1916 REMARK 3 L13: 4.0690 L23: -3.8624 REMARK 3 S TENSOR REMARK 3 S11: 1.4309 S12: -1.7671 S13: -1.3141 REMARK 3 S21: 2.5280 S22: -0.6245 S23: -0.3365 REMARK 3 S31: 2.0559 S32: -0.9520 S33: -0.4862 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.2218 -0.0575 56.2322 REMARK 3 T TENSOR REMARK 3 T11: 0.7992 T22: 0.4914 REMARK 3 T33: 0.4705 T12: -0.1137 REMARK 3 T13: -0.0303 T23: -0.0768 REMARK 3 L TENSOR REMARK 3 L11: 7.7926 L22: 6.8397 REMARK 3 L33: 9.5273 L12: 1.8701 REMARK 3 L13: -3.3842 L23: -2.9386 REMARK 3 S TENSOR REMARK 3 S11: 0.7453 S12: -0.9751 S13: -0.1725 REMARK 3 S21: 1.4336 S22: -0.6663 S23: 0.4068 REMARK 3 S31: -0.8448 S32: 0.4769 S33: 0.0105 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.6468 -3.3498 45.2268 REMARK 3 T TENSOR REMARK 3 T11: 0.7667 T22: 0.3769 REMARK 3 T33: 0.4452 T12: -0.0055 REMARK 3 T13: 0.2318 T23: 0.1118 REMARK 3 L TENSOR REMARK 3 L11: 2.3096 L22: 2.8980 REMARK 3 L33: 2.2793 L12: -0.1063 REMARK 3 L13: 0.0837 L23: 1.5408 REMARK 3 S TENSOR REMARK 3 S11: -0.4275 S12: -0.5288 S13: -0.5051 REMARK 3 S21: 0.9755 S22: 0.1239 S23: 0.5513 REMARK 3 S31: 0.9203 S32: -0.2556 S33: 0.1393 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.1615 6.1515 27.7508 REMARK 3 T TENSOR REMARK 3 T11: 0.4373 T22: 0.3066 REMARK 3 T33: 0.2655 T12: -0.0343 REMARK 3 T13: 0.0077 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.9425 L22: 2.4651 REMARK 3 L33: 0.9365 L12: -0.7188 REMARK 3 L13: -0.4275 L23: 1.1967 REMARK 3 S TENSOR REMARK 3 S11: -0.1212 S12: 0.2832 S13: 0.1146 REMARK 3 S21: -0.3752 S22: 0.1797 S23: 0.0735 REMARK 3 S31: 0.1256 S32: -0.0309 S33: -0.0522 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 220 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.8983 27.6109 35.8514 REMARK 3 T TENSOR REMARK 3 T11: 0.2350 T22: 0.2149 REMARK 3 T33: 0.2347 T12: 0.0086 REMARK 3 T13: -0.0024 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.5189 L22: 3.2041 REMARK 3 L33: 2.5984 L12: -0.2597 REMARK 3 L13: -0.4781 L23: -0.7216 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 0.0257 S13: 0.1305 REMARK 3 S21: -0.0408 S22: 0.0426 S23: 0.1855 REMARK 3 S31: -0.0906 S32: -0.1160 S33: -0.0541 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3599 33.4087 27.4435 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.3314 REMARK 3 T33: 0.4101 T12: 0.0423 REMARK 3 T13: -0.0321 T23: 0.0942 REMARK 3 L TENSOR REMARK 3 L11: 2.6528 L22: 4.6732 REMARK 3 L33: 5.7509 L12: 0.9579 REMARK 3 L13: -0.2512 L23: 0.3072 REMARK 3 S TENSOR REMARK 3 S11: -0.0122 S12: 0.1312 S13: 0.0009 REMARK 3 S21: -0.4292 S22: 0.1455 S23: 0.5835 REMARK 3 S31: -0.1882 S32: -0.5659 S33: -0.0794 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40765 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.565 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.85 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, BUCCANEER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SALTRX H9 OPT (290572D2): 100 MM BIS REMARK 280 -TRIS PROPANE HCL PH 6.5, 4 M AMMONIUM ACETATE: REMARK 280 MYPAA.19484.A.B1.PW38003 AT 19.5 MG/ML: DIRECT CRYO: PUCK ID REMARK 280 MAE2-10, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.39000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.58500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.69500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.58500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 149.08500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.58500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.58500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.69500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.58500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.58500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 149.08500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.39000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 699 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 759 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 816 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 LEU A 58 REMARK 465 LEU A 59 REMARK 465 ALA A 60 REMARK 465 ASP A 61 REMARK 465 GLY A 62 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 VAL A 50 CG1 CG2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 ASP A 56 CG OD1 OD2 REMARK 470 ILE A 57 CG1 CG2 CD1 REMARK 470 SER A 63 OG REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 PHE A 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 81 CG CD OE1 NE2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 142 CG1 CG2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 236 O HOH A 601 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 77 -27.27 72.09 REMARK 500 ARG A 193 -49.16 -132.44 REMARK 500 ARG A 329 71.38 -154.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 506 DBREF 6N39 A 1 407 UNP Q740M4 COAE_MYCPA 1 407 SEQADV 6N39 MET A -7 UNP Q740M4 EXPRESSION TAG SEQADV 6N39 ALA A -6 UNP Q740M4 EXPRESSION TAG SEQADV 6N39 HIS A -5 UNP Q740M4 EXPRESSION TAG SEQADV 6N39 HIS A -4 UNP Q740M4 EXPRESSION TAG SEQADV 6N39 HIS A -3 UNP Q740M4 EXPRESSION TAG SEQADV 6N39 HIS A -2 UNP Q740M4 EXPRESSION TAG SEQADV 6N39 HIS A -1 UNP Q740M4 EXPRESSION TAG SEQADV 6N39 HIS A 0 UNP Q740M4 EXPRESSION TAG SEQRES 1 A 415 MET ALA HIS HIS HIS HIS HIS HIS MET LEU ARG ILE GLY SEQRES 2 A 415 LEU THR GLY GLY ILE GLY ALA GLY LYS SER ALA LEU SER SEQRES 3 A 415 SER ALA PHE ALA GLN CYS GLY ALA VAL ILE VAL ASP GLY SEQRES 4 A 415 ASP VAL ILE ALA ARG GLU VAL VAL ARG PRO GLY THR GLU SEQRES 5 A 415 GLY LEU ALA ALA LEU VAL GLU ALA PHE GLY ARG ASP ILE SEQRES 6 A 415 LEU LEU ALA ASP GLY SER LEU ASP ARG PRO ALA LEU ALA SEQRES 7 A 415 ALA LYS ALA PHE ALA ASP ASP ALA ALA ARG GLN THR LEU SEQRES 8 A 415 ASN GLY ILE VAL HIS PRO LEU VAL GLY ALA ARG ARG ALA SEQRES 9 A 415 GLU ILE ILE ALA SER VAL PRO ALA ASP SER VAL VAL VAL SEQRES 10 A 415 GLU ASP ILE PRO LEU LEU VAL GLU SER GLY MET ALA PRO SEQRES 11 A 415 LEU PHE PRO LEU VAL VAL ILE VAL TYR ALA ASP VAL GLU SEQRES 12 A 415 VAL ARG LEU ARG ARG LEU VAL GLU GLN ARG GLY MET ALA SEQRES 13 A 415 GLU ALA ASP ALA ARG ALA ARG ILE ALA ALA GLN ALA SER SEQRES 14 A 415 ASP GLU GLN ARG ARG ALA VAL ALA ASP ILE TRP LEU ASP SEQRES 15 A 415 ASN SER GLY SER PRO ALA GLU LEU VAL GLN ARG ALA GLN SEQRES 16 A 415 GLN VAL TRP ASN GLU ARG ILE VAL PRO PHE ALA HIS ASN SEQRES 17 A 415 LEU SER THR ARG GLN ILE ALA ARG ALA PRO VAL ARG LEU SEQRES 18 A 415 VAL PRO PRO ASP PRO GLU TRP PRO ALA GLN ALA GLN ARG SEQRES 19 A 415 ILE VAL ASN ARG LEU LYS THR ALA SER GLY HIS ARG ALA SEQRES 20 A 415 LEU ARG VAL ASP HIS VAL GLY SER THR ALA LEU PRO GLY SEQRES 21 A 415 ASP PRO ASP PHE ALA ALA LYS ASP VAL ILE ASP ILE GLN SEQRES 22 A 415 ILE THR VAL GLU SER LEU ALA ALA ALA ASP GLU LEU VAL SEQRES 23 A 415 GLU PRO LEU LEU ALA ALA GLY TYR PRO ARG LEU GLU HIS SEQRES 24 A 415 ILE THR ALA ASP VAL ALA LYS PRO ASP ALA ARG SER THR SEQRES 25 A 415 VAL GLU ARG TYR ASP HIS THR GLY ASP PRO ALA LEU TRP SEQRES 26 A 415 HIS LYS ARG ILE HIS ALA SER ALA ASP PRO GLY ARG PRO SEQRES 27 A 415 THR ASN VAL HIS ILE ARG VAL ASP GLY TRP PRO GLY GLN SEQRES 28 A 415 GLN PHE ALA LEU LEU PHE VAL ASP TRP LEU THR ALA ASP SEQRES 29 A 415 PRO ASP ALA ARG ALA ASP TYR LEU ALA VAL LYS ARG SER SEQRES 30 A 415 ALA GLU GLN ARG ALA ASP GLY ASP ILE ASP ALA TYR VAL SEQRES 31 A 415 ALA VAL LYS GLU PRO TRP PHE ARG ASP ALA TYR ARG ARG SEQRES 32 A 415 ALA TRP ASP TRP ALA ASP SER THR GLY TRP LYS PRO HET ACT A 501 4 HET ACT A 502 4 HET ACT A 503 4 HET ACT A 504 4 HET ACT A 505 4 HET ACT A 506 4 HETNAM ACT ACETATE ION FORMUL 2 ACT 6(C2 H3 O2 1-) FORMUL 8 HOH *300(H2 O) HELIX 1 AA1 GLY A 13 CYS A 24 1 12 HELIX 2 AA2 GLY A 31 VAL A 38 1 8 HELIX 3 AA3 THR A 43 GLY A 54 1 12 HELIX 4 AA4 ASP A 65 ASP A 76 1 12 HELIX 5 AA5 ALA A 78 VAL A 102 1 25 HELIX 6 AA6 MET A 120 PHE A 124 5 5 HELIX 7 AA7 ASP A 133 GLY A 146 1 14 HELIX 8 AA8 ALA A 148 ALA A 158 1 11 HELIX 9 AA9 SER A 161 ALA A 169 1 9 HELIX 10 AB1 SER A 178 ARG A 193 1 16 HELIX 11 AB2 ARG A 193 THR A 203 1 11 HELIX 12 AB3 GLU A 219 GLY A 236 1 18 HELIX 13 AB4 GLY A 246 LEU A 250 5 5 HELIX 14 AB5 SER A 270 LEU A 277 1 8 HELIX 15 AB6 LEU A 277 ALA A 284 1 8 HELIX 16 AB7 VAL A 305 ASP A 309 5 5 HELIX 17 AB8 ASP A 313 HIS A 318 5 6 HELIX 18 AB9 TRP A 340 ASP A 356 1 17 HELIX 19 AC1 ASP A 356 ASP A 375 1 20 HELIX 20 AC2 ASP A 377 GLY A 404 1 28 SHEET 1 AA1 5 VAL A 27 ASP A 30 0 SHEET 2 AA1 5 VAL A 107 ASP A 111 1 O VAL A 109 N VAL A 27 SHEET 3 AA1 5 LEU A 2 GLY A 8 1 N ILE A 4 O GLU A 110 SHEET 4 AA1 5 VAL A 127 TYR A 131 1 O VAL A 128 N GLY A 5 SHEET 5 AA1 5 ILE A 171 ASP A 174 1 O ILE A 171 N ILE A 129 SHEET 1 AA2 2 LEU A 213 VAL A 214 0 SHEET 2 AA2 2 ALA A 258 LYS A 259 -1 O ALA A 258 N VAL A 214 SHEET 1 AA3 4 ARG A 241 VAL A 245 0 SHEET 2 AA3 4 ILE A 262 VAL A 268 -1 O THR A 267 N ARG A 241 SHEET 3 AA3 4 THR A 331 VAL A 337 1 O HIS A 334 N ILE A 266 SHEET 4 AA3 4 ARG A 320 ALA A 323 -1 N ARG A 320 O ILE A 335 SITE 1 AC1 5 GLY A 11 ALA A 12 GLY A 13 LYS A 14 SITE 2 AC1 5 SER A 15 SITE 1 AC2 4 GLY A 246 SER A 247 TYR A 363 ACT A 506 SITE 1 AC3 4 HOH A 615 HOH A 631 HOH A 639 HOH A 767 SITE 1 AC4 4 LEU A 271 HIS A 318 ARG A 320 HOH A 696 SITE 1 AC5 2 ALA A 257 ARG A 368 SITE 1 AC6 6 ALA A 258 LYS A 259 LYS A 367 TYR A 381 SITE 2 AC6 6 LYS A 385 ACT A 502 CRYST1 85.170 85.170 198.780 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011741 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005031 0.00000