HEADER TRANSFERASE 15-NOV-18 6N3G TITLE CRYSTAL STRUCTURE OF HISTONE LYSINE METHYLTRANSFERASE SMYD2 IN COMPLEX TITLE 2 WITH POLYETHYLENE GLYCOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE SMYD2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSKM-B,HISTONE METHYLTRANSFERASE SMYD2,LYSINE N- COMPND 5 METHYLTRANSFERASE 3C,SET AND MYND DOMAIN-CONTAINING PROTEIN 2; COMPND 6 EC: 2.1.1.-,2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD2, KMT3C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.PERRY,N.SPELLMON,J.BRUNZELLE,Z.YANG REVDAT 2 11-OCT-23 6N3G 1 REMARK REVDAT 1 20-NOV-19 6N3G 0 JRNL AUTH E.PERRY,Z.YANG JRNL TITL CRYSTAL STRUCTURE OF HISTONE LYSINE METHYLTRANSFERASE SMYD2 JRNL TITL 2 IN COMPLEX WITH POLYETHYLENE GLYCOL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 61.5 REMARK 3 NUMBER OF REFLECTIONS : 14382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 75.9570 - 4.1554 1.00 4550 237 0.1409 0.1728 REMARK 3 2 4.1554 - 3.2982 1.00 4424 248 0.1701 0.2385 REMARK 3 3 3.2982 - 2.8813 0.73 3224 177 0.2426 0.2862 REMARK 3 4 2.8813 - 2.6178 0.25 1111 67 0.2794 0.2816 REMARK 3 5 2.6178 - 2.4302 0.07 320 24 0.3094 0.3730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3625 REMARK 3 ANGLE : 1.313 4868 REMARK 3 CHIRALITY : 0.075 513 REMARK 3 PLANARITY : 0.012 623 REMARK 3 DIHEDRAL : 22.425 2209 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 157.5817 50.1216 -6.3840 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.1701 REMARK 3 T33: 0.2681 T12: 0.0316 REMARK 3 T13: -0.1008 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 1.9662 L22: 0.6147 REMARK 3 L33: 2.3062 L12: -0.2737 REMARK 3 L13: 0.9373 L23: -0.2806 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: 0.0702 S13: -0.0140 REMARK 3 S21: -0.0157 S22: -0.0017 S23: 0.3394 REMARK 3 S31: 0.2741 S32: -0.1836 S33: -0.0535 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 170.5542 49.7164 0.2415 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: 0.1486 REMARK 3 T33: 0.1622 T12: 0.0987 REMARK 3 T13: -0.0370 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 1.0771 L22: 0.9341 REMARK 3 L33: 1.9642 L12: 0.2906 REMARK 3 L13: 0.1727 L23: 0.0609 REMARK 3 S TENSOR REMARK 3 S11: -0.0839 S12: -0.1504 S13: 0.0787 REMARK 3 S21: 0.0438 S22: 0.1473 S23: -0.0059 REMARK 3 S31: 0.2145 S32: 0.1942 S33: -0.0262 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 180.8377 61.3289 0.4948 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.2181 REMARK 3 T33: 0.2988 T12: -0.0146 REMARK 3 T13: -0.1103 T23: -0.1440 REMARK 3 L TENSOR REMARK 3 L11: 6.6266 L22: 2.2629 REMARK 3 L33: 2.7672 L12: -0.4684 REMARK 3 L13: 1.8437 L23: -0.7278 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: -0.1439 S13: 0.1907 REMARK 3 S21: 0.1642 S22: 0.0923 S23: -0.1539 REMARK 3 S31: -0.1542 S32: 0.3982 S33: 0.1209 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 192.2358 61.2582 -13.5541 REMARK 3 T TENSOR REMARK 3 T11: 0.4296 T22: 0.3140 REMARK 3 T33: 0.5807 T12: -0.0682 REMARK 3 T13: 0.0127 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.3614 L22: 2.2293 REMARK 3 L33: 4.2684 L12: 0.2440 REMARK 3 L13: 0.8180 L23: 0.0882 REMARK 3 S TENSOR REMARK 3 S11: -0.1863 S12: 0.0805 S13: 0.7090 REMARK 3 S21: -0.1434 S22: -0.0285 S23: -0.4015 REMARK 3 S31: -0.9035 S32: 0.7884 S33: 0.1852 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 187.7360 49.3019 -19.4788 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.4586 REMARK 3 T33: 0.2394 T12: 0.1029 REMARK 3 T13: -0.0019 T23: 0.0674 REMARK 3 L TENSOR REMARK 3 L11: 1.3514 L22: 1.6894 REMARK 3 L33: 2.4993 L12: 0.3019 REMARK 3 L13: 0.2469 L23: 1.0705 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: 0.4161 S13: 0.2859 REMARK 3 S21: -0.2105 S22: 0.0520 S23: -0.1616 REMARK 3 S31: -0.1003 S32: 0.7642 S33: 0.0090 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 379 THROUGH 433 ) REMARK 3 ORIGIN FOR THE GROUP (A): 180.7926 31.5925 -10.9431 REMARK 3 T TENSOR REMARK 3 T11: 0.4699 T22: 0.2382 REMARK 3 T33: 0.2218 T12: 0.1133 REMARK 3 T13: 0.0066 T23: -0.0728 REMARK 3 L TENSOR REMARK 3 L11: 5.0571 L22: 0.4255 REMARK 3 L33: 2.4003 L12: -1.0209 REMARK 3 L13: -2.2186 L23: 0.0410 REMARK 3 S TENSOR REMARK 3 S11: -0.3548 S12: 0.0365 S13: -0.6967 REMARK 3 S21: -0.0309 S22: -0.0010 S23: 0.1391 REMARK 3 S31: 0.9553 S32: 0.0498 S33: 0.2776 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000237314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JUN 1, 2017 REMARK 200 BUILT=20170923 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14389 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 107.367 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.11.1-2575 REMARK 200 STARTING MODEL: PDB ENTRY 5KJK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, ETHANOL, WATER, 1 M TRIS, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 75.92000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.92000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.87000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 75.92000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.92000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.87000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 75.92000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 75.92000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.87000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 75.92000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 75.92000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.87000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ALA A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 56 -1.68 82.58 REMARK 500 GLN A 70 43.52 -143.82 REMARK 500 ALA A 71 114.92 -167.10 REMARK 500 ASN A 75 -163.43 -162.40 REMARK 500 CYS A 90 -77.82 -46.09 REMARK 500 ASN A 101 54.50 -150.24 REMARK 500 ASP A 142 -155.99 -103.12 REMARK 500 PRO A 167 -146.67 -86.28 REMARK 500 CYS A 264 170.61 -54.75 REMARK 500 LYS A 281 57.93 -66.92 REMARK 500 ASP A 284 72.38 -107.94 REMARK 500 PRO A 285 130.46 -36.09 REMARK 500 TYR A 311 -12.39 -161.04 REMARK 500 SER A 329 1.11 -57.53 REMARK 500 PRO A 375 -175.25 -63.91 REMARK 500 GLU A 396 46.32 73.07 REMARK 500 HIS A 397 62.73 -110.67 REMARK 500 GLU A 431 43.95 -91.98 REMARK 500 SER A 432 -38.12 -148.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 510 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 CYS A 55 SG 102.7 REMARK 620 3 CYS A 74 SG 91.2 103.3 REMARK 620 4 CYS A 78 SG 103.7 123.0 125.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 511 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 68 SG 119.4 REMARK 620 3 HIS A 86 NE2 114.0 102.2 REMARK 620 4 CYS A 90 SG 114.4 111.9 90.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 512 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 209 SG REMARK 620 2 CYS A 262 SG 113.8 REMARK 620 3 CYS A 264 SG 111.3 93.1 REMARK 620 4 CYS A 267 SG 95.5 115.6 128.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 12P A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 512 DBREF 6N3G A 1 433 UNP Q9NRG4 SMYD2_HUMAN 1 433 SEQADV 6N3G GLU A 165 UNP Q9NRG4 GLY 165 CONFLICT SEQRES 1 A 433 MET ARG ALA GLU GLY LEU GLY GLY LEU GLU ARG PHE CYS SEQRES 2 A 433 SER PRO GLY LYS GLY ARG GLY LEU ARG ALA LEU GLN PRO SEQRES 3 A 433 PHE GLN VAL GLY ASP LEU LEU PHE SER CYS PRO ALA TYR SEQRES 4 A 433 ALA TYR VAL LEU THR VAL ASN GLU ARG GLY ASN HIS CYS SEQRES 5 A 433 GLU TYR CYS PHE THR ARG LYS GLU GLY LEU SER LYS CYS SEQRES 6 A 433 GLY ARG CYS LYS GLN ALA PHE TYR CYS ASN VAL GLU CYS SEQRES 7 A 433 GLN LYS GLU ASP TRP PRO MET HIS LYS LEU GLU CYS SER SEQRES 8 A 433 PRO MET VAL VAL PHE GLY GLU ASN TRP ASN PRO SER GLU SEQRES 9 A 433 THR VAL ARG LEU THR ALA ARG ILE LEU ALA LYS GLN LYS SEQRES 10 A 433 ILE HIS PRO GLU ARG THR PRO SER GLU LYS LEU LEU ALA SEQRES 11 A 433 VAL LYS GLU PHE GLU SER HIS LEU ASP LYS LEU ASP ASN SEQRES 12 A 433 GLU LYS LYS ASP LEU ILE GLN SER ASP ILE ALA ALA LEU SEQRES 13 A 433 HIS HIS PHE TYR SER LYS HIS LEU GLU PHE PRO ASP ASN SEQRES 14 A 433 ASP SER LEU VAL VAL LEU PHE ALA GLN VAL ASN CYS ASN SEQRES 15 A 433 GLY PHE THR ILE GLU ASP GLU GLU LEU SER HIS LEU GLY SEQRES 16 A 433 SER ALA ILE PHE PRO ASP VAL ALA LEU MET ASN HIS SER SEQRES 17 A 433 CYS CYS PRO ASN VAL ILE VAL THR TYR LYS GLY THR LEU SEQRES 18 A 433 ALA GLU VAL ARG ALA VAL GLN GLU ILE LYS PRO GLY GLU SEQRES 19 A 433 GLU VAL PHE THR SER TYR ILE ASP LEU LEU TYR PRO THR SEQRES 20 A 433 GLU ASP ARG ASN ASP ARG LEU ARG ASP SER TYR PHE PHE SEQRES 21 A 433 THR CYS GLU CYS GLN GLU CYS THR THR LYS ASP LYS ASP SEQRES 22 A 433 LYS ALA LYS VAL GLU ILE ARG LYS LEU SER ASP PRO PRO SEQRES 23 A 433 LYS ALA GLU ALA ILE ARG ASP MET VAL ARG TYR ALA ARG SEQRES 24 A 433 ASN VAL ILE GLU GLU PHE ARG ARG ALA LYS HIS TYR LYS SEQRES 25 A 433 SER PRO SER GLU LEU LEU GLU ILE CYS GLU LEU SER GLN SEQRES 26 A 433 GLU LYS MET SER SER VAL PHE GLU ASP SER ASN VAL TYR SEQRES 27 A 433 MET LEU HIS MET MET TYR GLN ALA MET GLY VAL CYS LEU SEQRES 28 A 433 TYR MET GLN ASP TRP GLU GLY ALA LEU GLN TYR GLY GLN SEQRES 29 A 433 LYS ILE ILE LYS PRO TYR SER LYS HIS TYR PRO LEU TYR SEQRES 30 A 433 SER LEU ASN VAL ALA SER MET TRP LEU LYS LEU GLY ARG SEQRES 31 A 433 LEU TYR MET GLY LEU GLU HIS LYS ALA ALA GLY GLU LYS SEQRES 32 A 433 ALA LEU LYS LYS ALA ILE ALA ILE MET GLU VAL ALA HIS SEQRES 33 A 433 GLY LYS ASP HIS PRO TYR ILE SER GLU ILE LYS GLN GLU SEQRES 34 A 433 ILE GLU SER HIS HET SAH A 501 26 HET 12P A 502 37 HET NI A 503 1 HET NI A 504 1 HET EOH A 505 3 HET EOH A 506 3 HET EOH A 507 3 HET EOH A 508 3 HET EOH A 509 3 HET ZN A 510 1 HET ZN A 511 1 HET ZN A 512 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM 12P DODECAETHYLENE GLYCOL HETNAM NI NICKEL (II) ION HETNAM EOH ETHANOL HETNAM ZN ZINC ION HETSYN 12P POLYETHYLENE GLYCOL PEG400 FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 12P C24 H50 O13 FORMUL 4 NI 2(NI 2+) FORMUL 6 EOH 5(C2 H6 O) FORMUL 11 ZN 3(ZN 2+) FORMUL 14 HOH *79(H2 O) HELIX 1 AA1 VAL A 45 ARG A 48 5 4 HELIX 2 AA2 ASN A 75 LYS A 87 1 13 HELIX 3 AA3 GLU A 89 GLY A 97 1 9 HELIX 4 AA4 GLU A 98 TRP A 100 5 3 HELIX 5 AA5 SER A 103 HIS A 119 1 17 HELIX 6 AA6 ALA A 130 PHE A 134 5 5 HELIX 7 AA7 HIS A 137 LEU A 141 5 5 HELIX 8 AA8 ASP A 142 TYR A 160 1 19 HELIX 9 AA9 ASP A 168 ASN A 182 1 15 HELIX 10 AB1 ASP A 201 MET A 205 5 5 HELIX 11 AB2 PRO A 246 PHE A 259 1 14 HELIX 12 AB3 CYS A 264 LYS A 270 1 7 HELIX 13 AB4 LYS A 272 VAL A 277 1 6 HELIX 14 AB5 LYS A 287 LYS A 309 1 23 HELIX 15 AB6 SER A 313 SER A 329 1 17 HELIX 16 AB7 ASN A 336 MET A 353 1 18 HELIX 17 AB8 ASP A 355 TYR A 374 1 20 HELIX 18 AB9 SER A 378 GLU A 396 1 19 HELIX 19 AC1 HIS A 397 HIS A 416 1 20 HELIX 20 AC2 HIS A 420 GLU A 431 1 12 SHEET 1 AA1 2 LEU A 9 SER A 14 0 SHEET 2 AA1 2 GLY A 18 ALA A 23 -1 O ARG A 22 N GLU A 10 SHEET 1 AA2 3 LEU A 32 PRO A 37 0 SHEET 2 AA2 3 LEU A 221 ALA A 226 -1 O VAL A 224 N LEU A 33 SHEET 3 AA2 3 VAL A 213 LYS A 218 -1 N THR A 216 O GLU A 223 SHEET 1 AA3 3 ALA A 40 LEU A 43 0 SHEET 2 AA3 3 HIS A 193 ILE A 198 -1 O SER A 196 N VAL A 42 SHEET 3 AA3 3 GLY A 183 GLU A 187 -1 N ILE A 186 O LEU A 194 SHEET 1 AA4 2 SER A 63 LYS A 64 0 SHEET 2 AA4 2 PHE A 72 TYR A 73 -1 O TYR A 73 N SER A 63 SHEET 1 AA5 2 ASN A 206 HIS A 207 0 SHEET 2 AA5 2 PHE A 237 THR A 238 1 O THR A 238 N ASN A 206 LINK SG CYS A 52 ZN ZN A 510 1555 1555 2.64 LINK SG CYS A 55 ZN ZN A 510 1555 1555 2.37 LINK SG CYS A 65 ZN ZN A 511 1555 1555 2.39 LINK SG CYS A 68 ZN ZN A 511 1555 1555 2.38 LINK SG CYS A 74 ZN ZN A 510 1555 1555 2.27 LINK SG CYS A 78 ZN ZN A 510 1555 1555 2.27 LINK NE2 HIS A 86 ZN ZN A 511 1555 1555 2.18 LINK SG CYS A 90 ZN ZN A 511 1555 1555 2.24 LINK SG CYS A 209 ZN ZN A 512 1555 1555 2.44 LINK SG CYS A 262 ZN ZN A 512 1555 1555 2.27 LINK SG CYS A 264 ZN ZN A 512 1555 1555 2.38 LINK SG CYS A 267 ZN ZN A 512 1555 1555 2.41 SITE 1 AC1 16 GLY A 16 LYS A 17 ARG A 19 GLU A 135 SITE 2 AC1 16 HIS A 137 LYS A 162 CYS A 181 ASN A 182 SITE 3 AC1 16 ALA A 203 ASN A 206 HIS A 207 TYR A 240 SITE 4 AC1 16 TYR A 258 PHE A 260 HOH A 602 HOH A 624 SITE 1 AC2 11 GLU A 190 LYS A 309 HIS A 310 TYR A 344 SITE 2 AC2 11 GLY A 348 LEU A 351 TYR A 352 TRP A 356 SITE 3 AC2 11 LYS A 387 ARG A 390 GLY A 394 SITE 1 AC3 2 EOH A 505 EOH A 507 SITE 1 AC4 7 PHE A 184 VAL A 202 ALA A 203 MET A 205 SITE 2 AC4 7 THR A 238 TYR A 240 NI A 503 SITE 1 AC5 3 PRO A 15 LYS A 17 GLU A 263 SITE 1 AC6 4 THR A 185 TYR A 240 NI A 503 HOH A 650 SITE 1 AC7 1 ARG A 67 SITE 1 AC8 3 ASP A 188 GLU A 190 SER A 192 SITE 1 AC9 4 CYS A 52 CYS A 55 CYS A 74 CYS A 78 SITE 1 AD1 4 CYS A 65 CYS A 68 HIS A 86 CYS A 90 SITE 1 AD2 4 CYS A 209 CYS A 262 CYS A 264 CYS A 267 CRYST1 151.840 151.840 53.740 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006586 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006586 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018608 0.00000