HEADER CYTOSOLIC PROTEIN 21-NOV-18 6N54 TITLE CRYSTAL STRUCTURE OF HUMAN URIDINE-CYTIDINE KINASE 2 COMPLEXED WITH TITLE 2 2'-AZIDOCYTIDINE MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE-CYTIDINE KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UCK 2,CYTIDINE MONOPHOSPHOKINASE 2,TESTIS-SPECIFIC PROTEIN COMPND 5 TSA903,URIDINE MONOPHOSPHOKINASE 2; COMPND 6 EC: 2.7.1.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UCK2, UMPK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS URIDINE-CYTIDINE KINASE 2, UCK2, KINASE, COMPLEX, AZIDE, CYTOSOLIC KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.J.CUTHBERT,S.NAINAR,R.C.SPITALE,C.W.GOULDING REVDAT 5 11-OCT-23 6N54 1 LINK REVDAT 4 18-MAR-20 6N54 1 JRNL REVDAT 3 19-FEB-20 6N54 1 JRNL REVDAT 2 15-JAN-20 6N54 1 JRNL REVDAT 1 27-NOV-19 6N54 0 JRNL AUTH S.NAINAR,B.J.CUTHBERT,N.M.LIM,W.E.ENGLAND,K.KE,K.SOPHAL, JRNL AUTH 2 R.QUECHOL,D.L.MOBLEY,C.W.GOULDING,R.C.SPITALE JRNL TITL AN OPTIMIZED CHEMICAL-GENETIC METHOD FOR CELL-SPECIFIC JRNL TITL 2 METABOLIC LABELING OF RNA. JRNL REF NAT.METHODS V. 17 311 2020 JRNL REFN ESSN 1548-7105 JRNL PMID 32015544 JRNL DOI 10.1038/S41592-019-0726-Y REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 29824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.710 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5917 - 5.8384 0.99 2121 153 0.1811 0.1876 REMARK 3 2 5.8384 - 4.6355 1.00 2040 147 0.1741 0.2172 REMARK 3 3 4.6355 - 4.0499 1.00 2045 146 0.1482 0.2052 REMARK 3 4 4.0499 - 3.6798 1.00 2009 144 0.1741 0.1942 REMARK 3 5 3.6798 - 3.4161 1.00 2024 146 0.1790 0.2274 REMARK 3 6 3.4161 - 3.2147 1.00 1990 143 0.2063 0.2566 REMARK 3 7 3.2147 - 3.0538 1.00 2020 145 0.2142 0.2687 REMARK 3 8 3.0538 - 2.9209 1.00 1994 144 0.2298 0.2864 REMARK 3 9 2.9209 - 2.8084 1.00 1995 143 0.2317 0.2792 REMARK 3 10 2.8084 - 2.7115 1.00 2007 144 0.2233 0.2590 REMARK 3 11 2.7115 - 2.6268 1.00 1992 144 0.2256 0.2642 REMARK 3 12 2.6268 - 2.5517 1.00 1981 141 0.2275 0.2651 REMARK 3 13 2.5517 - 2.4845 1.00 2005 144 0.2453 0.2957 REMARK 3 14 2.4845 - 2.4239 0.80 1601 116 0.2712 0.3179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3432 REMARK 3 ANGLE : 0.517 4639 REMARK 3 CHIRALITY : 0.043 540 REMARK 3 PLANARITY : 0.003 584 REMARK 3 DIHEDRAL : 4.849 2034 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 198 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29839 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 31.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1UEI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA/K PHOSPHATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.63150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 123.94350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.63150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 123.94350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.63150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 123.94350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.63150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.94350 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.16450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 123.94350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.16450 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 123.94350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 45.16450 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 123.94350 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 45.16450 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 123.94350 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 45.16450 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.63150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 45.16450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 70.63150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 45.16450 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 70.63150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 45.16450 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 70.63150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 442 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 460 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 GLN A 10 REMARK 465 ASN A 11 REMARK 465 HIS A 12 REMARK 465 GLN A 13 REMARK 465 GLN A 14 REMARK 465 PRO A 15 REMARK 465 ASN A 16 REMARK 465 GLY A 17 REMARK 465 GLU A 48 REMARK 465 VAL A 49 REMARK 465 ASP A 50 REMARK 465 TYR A 51 REMARK 465 GLY A 232 REMARK 465 PRO A 233 REMARK 465 SER A 234 REMARK 465 LYS A 235 REMARK 465 ARG A 236 REMARK 465 GLN A 237 REMARK 465 THR A 238 REMARK 465 ASN A 239 REMARK 465 GLY A 240 REMARK 465 CYS A 241 REMARK 465 LEU A 242 REMARK 465 ASN A 243 REMARK 465 GLY A 244 REMARK 465 TYR A 245 REMARK 465 THR A 246 REMARK 465 PRO A 247 REMARK 465 SER A 248 REMARK 465 ARG A 249 REMARK 465 LYS A 250 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 GLN B 7 REMARK 465 THR B 8 REMARK 465 LEU B 9 REMARK 465 GLN B 10 REMARK 465 ASN B 11 REMARK 465 HIS B 12 REMARK 465 GLN B 13 REMARK 465 GLN B 14 REMARK 465 PRO B 15 REMARK 465 ASN B 16 REMARK 465 GLY B 17 REMARK 465 ASP B 50 REMARK 465 TYR B 51 REMARK 465 ARG B 52 REMARK 465 SER B 234 REMARK 465 LYS B 235 REMARK 465 ARG B 236 REMARK 465 GLN B 237 REMARK 465 THR B 238 REMARK 465 ASN B 239 REMARK 465 GLY B 240 REMARK 465 CYS B 241 REMARK 465 LEU B 242 REMARK 465 ASN B 243 REMARK 465 GLY B 244 REMARK 465 TYR B 245 REMARK 465 THR B 246 REMARK 465 PRO B 247 REMARK 465 SER B 248 REMARK 465 ARG B 249 REMARK 465 LYS B 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 ASN B 47 CG OD1 ND2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 VAL B 49 CG1 CG2 REMARK 470 GLN B 53 CG CD OE1 NE2 REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 LEU B 77 CG CD1 CD2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 VAL B 115 CG1 CG2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 303 O3 REMARK 620 2 HOH A 403 O 142.8 REMARK 620 3 HOH A 450 O 81.5 105.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 B 308 O1 REMARK 620 2 HOH B 426 O 135.7 REMARK 620 3 HOH B 451 O 84.7 77.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KEA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KEA B 309 DBREF 6N54 A 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 DBREF 6N54 B 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 SEQADV 6N54 GLY A -4 UNP Q9BZX2 EXPRESSION TAG SEQADV 6N54 PRO A -3 UNP Q9BZX2 EXPRESSION TAG SEQADV 6N54 LEU A -2 UNP Q9BZX2 EXPRESSION TAG SEQADV 6N54 GLY A -1 UNP Q9BZX2 EXPRESSION TAG SEQADV 6N54 SER A 0 UNP Q9BZX2 EXPRESSION TAG SEQADV 6N54 GLY B -4 UNP Q9BZX2 EXPRESSION TAG SEQADV 6N54 PRO B -3 UNP Q9BZX2 EXPRESSION TAG SEQADV 6N54 LEU B -2 UNP Q9BZX2 EXPRESSION TAG SEQADV 6N54 GLY B -1 UNP Q9BZX2 EXPRESSION TAG SEQADV 6N54 SER B 0 UNP Q9BZX2 EXPRESSION TAG SEQRES 1 A 255 GLY PRO LEU GLY SER MET ALA GLY ASP SER GLU GLN THR SEQRES 2 A 255 LEU GLN ASN HIS GLN GLN PRO ASN GLY GLY GLU PRO PHE SEQRES 3 A 255 LEU ILE GLY VAL SER GLY GLY THR ALA SER GLY LYS SER SEQRES 4 A 255 SER VAL CYS ALA LYS ILE VAL GLN LEU LEU GLY GLN ASN SEQRES 5 A 255 GLU VAL ASP TYR ARG GLN LYS GLN VAL VAL ILE LEU SER SEQRES 6 A 255 GLN ASP SER PHE TYR ARG VAL LEU THR SER GLU GLN LYS SEQRES 7 A 255 ALA LYS ALA LEU LYS GLY GLN PHE ASN PHE ASP HIS PRO SEQRES 8 A 255 ASP ALA PHE ASP ASN GLU LEU ILE LEU LYS THR LEU LYS SEQRES 9 A 255 GLU ILE THR GLU GLY LYS THR VAL GLN ILE PRO VAL TYR SEQRES 10 A 255 ASP PHE VAL SER HIS SER ARG LYS GLU GLU THR VAL THR SEQRES 11 A 255 VAL TYR PRO ALA ASP VAL VAL LEU PHE GLU GLY ILE LEU SEQRES 12 A 255 ALA PHE TYR SER GLN GLU VAL ARG ASP LEU PHE GLN MET SEQRES 13 A 255 LYS LEU PHE VAL ASP THR ASP ALA ASP THR ARG LEU SER SEQRES 14 A 255 ARG ARG VAL LEU ARG ASP ILE SER GLU ARG GLY ARG ASP SEQRES 15 A 255 LEU GLU GLN ILE LEU SER GLN TYR ILE THR PHE VAL LYS SEQRES 16 A 255 PRO ALA PHE GLU GLU PHE CYS LEU PRO THR LYS LYS TYR SEQRES 17 A 255 ALA ASP VAL ILE ILE PRO ARG GLY ALA ASP ASN LEU VAL SEQRES 18 A 255 ALA ILE ASN LEU ILE VAL GLN HIS ILE GLN ASP ILE LEU SEQRES 19 A 255 ASN GLY GLY PRO SER LYS ARG GLN THR ASN GLY CYS LEU SEQRES 20 A 255 ASN GLY TYR THR PRO SER ARG LYS SEQRES 1 B 255 GLY PRO LEU GLY SER MET ALA GLY ASP SER GLU GLN THR SEQRES 2 B 255 LEU GLN ASN HIS GLN GLN PRO ASN GLY GLY GLU PRO PHE SEQRES 3 B 255 LEU ILE GLY VAL SER GLY GLY THR ALA SER GLY LYS SER SEQRES 4 B 255 SER VAL CYS ALA LYS ILE VAL GLN LEU LEU GLY GLN ASN SEQRES 5 B 255 GLU VAL ASP TYR ARG GLN LYS GLN VAL VAL ILE LEU SER SEQRES 6 B 255 GLN ASP SER PHE TYR ARG VAL LEU THR SER GLU GLN LYS SEQRES 7 B 255 ALA LYS ALA LEU LYS GLY GLN PHE ASN PHE ASP HIS PRO SEQRES 8 B 255 ASP ALA PHE ASP ASN GLU LEU ILE LEU LYS THR LEU LYS SEQRES 9 B 255 GLU ILE THR GLU GLY LYS THR VAL GLN ILE PRO VAL TYR SEQRES 10 B 255 ASP PHE VAL SER HIS SER ARG LYS GLU GLU THR VAL THR SEQRES 11 B 255 VAL TYR PRO ALA ASP VAL VAL LEU PHE GLU GLY ILE LEU SEQRES 12 B 255 ALA PHE TYR SER GLN GLU VAL ARG ASP LEU PHE GLN MET SEQRES 13 B 255 LYS LEU PHE VAL ASP THR ASP ALA ASP THR ARG LEU SER SEQRES 14 B 255 ARG ARG VAL LEU ARG ASP ILE SER GLU ARG GLY ARG ASP SEQRES 15 B 255 LEU GLU GLN ILE LEU SER GLN TYR ILE THR PHE VAL LYS SEQRES 16 B 255 PRO ALA PHE GLU GLU PHE CYS LEU PRO THR LYS LYS TYR SEQRES 17 B 255 ALA ASP VAL ILE ILE PRO ARG GLY ALA ASP ASN LEU VAL SEQRES 18 B 255 ALA ILE ASN LEU ILE VAL GLN HIS ILE GLN ASP ILE LEU SEQRES 19 B 255 ASN GLY GLY PRO SER LYS ARG GLN THR ASN GLY CYS LEU SEQRES 20 B 255 ASN GLY TYR THR PRO SER ARG LYS HET MG A 301 1 HET GOL A 302 6 HET PO4 A 303 5 HET KEA A 304 23 HET MG B 301 1 HET GOL B 302 6 HET GOL B 303 6 HET GOL B 304 6 HET GOL B 305 6 HET GOL B 306 6 HET GOL B 307 6 HET PO4 B 308 5 HET KEA B 309 23 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM KEA 2'-AZIDO-2'-DEOXYCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN KEA 2'-AZIDOCYTIDINE MONOPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 GOL 7(C3 H8 O3) FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 KEA 2(C9 H13 N6 O7 P) FORMUL 16 HOH *145(H2 O) HELIX 1 AA1 GLY A 32 GLY A 45 1 14 HELIX 2 AA2 ASP A 62 TYR A 65 5 4 HELIX 3 AA3 THR A 69 LYS A 78 1 10 HELIX 4 AA4 HIS A 85 PHE A 89 5 5 HELIX 5 AA5 ASP A 90 GLU A 103 1 14 HELIX 6 AA6 SER A 142 PHE A 149 1 8 HELIX 7 AA7 ASP A 158 ARG A 174 1 17 HELIX 8 AA8 ASP A 177 PHE A 188 1 12 HELIX 9 AA9 PHE A 188 PHE A 196 1 9 HELIX 10 AB1 CYS A 197 ALA A 204 5 8 HELIX 11 AB2 GLY A 211 ASP A 213 5 3 HELIX 12 AB3 ASN A 214 GLY A 231 1 18 HELIX 13 AB4 GLY B 32 ASN B 47 1 16 HELIX 14 AB5 ASP B 62 TYR B 65 5 4 HELIX 15 AB6 THR B 69 LYS B 78 1 10 HELIX 16 AB7 HIS B 85 PHE B 89 5 5 HELIX 17 AB8 ASP B 90 GLU B 103 1 14 HELIX 18 AB9 SER B 142 PHE B 149 1 8 HELIX 19 AC1 ASP B 158 SER B 172 1 15 HELIX 20 AC2 ASP B 177 PHE B 188 1 12 HELIX 21 AC3 PHE B 188 CYS B 197 1 10 HELIX 22 AC4 LEU B 198 ALA B 204 5 7 HELIX 23 AC5 GLY B 211 ASP B 213 5 3 HELIX 24 AC6 ASN B 214 ASN B 230 1 17 SHEET 1 AA1 5 VAL A 56 SER A 60 0 SHEET 2 AA1 5 VAL A 131 GLU A 135 1 O LEU A 133 N LEU A 59 SHEET 3 AA1 5 PHE A 21 GLY A 27 1 N ILE A 23 O VAL A 132 SHEET 4 AA1 5 MET A 151 ASP A 156 1 O LEU A 153 N SER A 26 SHEET 5 AA1 5 VAL A 206 PRO A 209 1 O ILE A 208 N PHE A 154 SHEET 1 AA2 2 VAL A 107 ASP A 113 0 SHEET 2 AA2 2 SER A 118 VAL A 126 -1 O LYS A 120 N VAL A 111 SHEET 1 AA3 5 VAL B 56 SER B 60 0 SHEET 2 AA3 5 VAL B 131 GLU B 135 1 O LEU B 133 N LEU B 59 SHEET 3 AA3 5 PHE B 21 GLY B 27 1 N ILE B 23 O VAL B 132 SHEET 4 AA3 5 MET B 151 ASP B 156 1 O LEU B 153 N GLY B 24 SHEET 5 AA3 5 VAL B 206 PRO B 209 1 O ILE B 208 N PHE B 154 SHEET 1 AA4 2 VAL B 107 ASP B 113 0 SHEET 2 AA4 2 SER B 118 VAL B 126 -1 O VAL B 124 N ILE B 109 LINK MG MG A 301 O3 PO4 A 303 1555 1555 2.78 LINK MG MG A 301 O HOH A 403 1555 1555 2.08 LINK MG MG A 301 O HOH A 450 1555 1555 2.39 LINK MG MG B 301 O1 PO4 B 308 1555 1555 2.61 LINK MG MG B 301 O HOH B 426 1555 1555 2.30 LINK MG MG B 301 O HOH B 451 1555 1555 2.65 SITE 1 AC1 4 GLU A 135 PO4 A 303 HOH A 403 HOH A 450 SITE 1 AC2 1 ARG A 52 SITE 1 AC3 9 ALA A 30 SER A 31 GLY A 32 LYS A 33 SITE 2 AC3 9 SER A 34 ARG A 169 MG A 301 KEA A 304 SITE 3 AC3 9 HOH A 407 SITE 1 AC4 13 THR A 29 LYS A 33 ASP A 62 TYR A 65 SITE 2 AC4 13 ASP A 84 PHE A 114 HIS A 117 ARG A 166 SITE 3 AC4 13 ARG A 169 PO4 A 303 HOH A 401 HOH A 402 SITE 4 AC4 13 HOH A 411 SITE 1 AC5 5 GLU B 135 PO4 B 308 HOH B 426 HOH B 446 SITE 2 AC5 5 HOH B 451 SITE 1 AC6 4 ARG B 146 ASP B 147 TYR B 203 GOL B 305 SITE 1 AC7 7 PRO B 86 ASN B 91 ILE B 94 LEU B 138 SITE 2 AC7 7 TYR B 141 SER B 142 HOH B 415 SITE 1 AC8 5 GLU A 194 LEU A 198 TYR B 141 ARG B 146 SITE 2 AC8 5 TYR B 203 SITE 1 AC9 4 LYS B 152 TYR B 203 GOL B 302 HOH B 408 SITE 1 AD1 4 ASP B 156 ASP B 158 LYS B 201 HOH B 410 SITE 1 AD2 1 GLN B 53 SITE 1 AD3 10 ALA B 30 SER B 31 GLY B 32 LYS B 33 SITE 2 AD3 10 SER B 34 GLU B 135 ARG B 169 MG B 301 SITE 3 AD3 10 KEA B 309 HOH B 403 SITE 1 AD4 12 THR B 29 LYS B 33 ASP B 62 TYR B 65 SITE 2 AD4 12 ASP B 84 PHE B 114 HIS B 117 ILE B 137 SITE 3 AD4 12 ARG B 166 VAL B 189 PO4 B 308 HOH B 426 CRYST1 90.329 141.263 247.887 90.00 90.00 90.00 F 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011071 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004034 0.00000