data_6N5N # _entry.id 6N5N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6N5N pdb_00006n5n 10.2210/pdb6n5n/pdb WWPDB D_1000238224 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6N5K unspecified PDB . 6N5L unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6N5N _pdbx_database_status.recvd_initial_deposition_date 2018-11-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shoffner, G.M.' 1 0000-0001-5479-4203 'Peng, Z.' 2 0000-0001-7666-1276 'Guo, F.' 3 0000-0002-6245-1486 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Three-dimensional structures of pri-miRNA apical junctions and loops revealed by scaffold-directed crystallography' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shoffner, G.M.' 1 0000-0001-5479-4203 primary 'Peng, Z.' 2 0000-0001-7666-1276 primary 'Guo, F.' 3 0000-0002-6245-1486 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6N5N _cell.details ? _cell.formula_units_Z ? _cell.length_a 114.680 _cell.length_a_esd ? _cell.length_b 114.680 _cell.length_b_esd ? _cell.length_c 114.810 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (125-MER)' 40569.992 1 ? ? ? ? 2 non-polymer syn ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 658.412 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GUUGCCGAAUCCGAUGCUCGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUAC CUUCUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGUUGCCGAAUCCGAUGCUCGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACCUUC UGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 U n 1 4 U n 1 5 G n 1 6 C n 1 7 C n 1 8 G n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 C n 1 14 G n 1 15 A n 1 16 U n 1 17 G n 1 18 C n 1 19 U n 1 20 C n 1 21 G n 1 22 G n 1 23 U n 1 24 A n 1 25 C n 1 26 G n 1 27 G n 1 28 A n 1 29 G n 1 30 G n 1 31 A n 1 32 A n 1 33 C n 1 34 C n 1 35 G n 1 36 C n 1 37 U n 1 38 U n 1 39 U n 1 40 U n 1 41 U n 1 42 G n 1 43 G n 1 44 G n 1 45 G n 1 46 U n 1 47 U n 1 48 A n 1 49 A n 1 50 U n 1 51 C n 1 52 U n 1 53 G n 1 54 C n 1 55 A n 1 56 G n 1 57 U n 1 58 G n 1 59 A n 1 60 A n 1 61 G n 1 62 C n 1 63 U n 1 64 G n 1 65 C n 1 66 A n 1 67 G n 1 68 U n 1 69 A n 1 70 G n 1 71 G n 1 72 G n 1 73 A n 1 74 U n 1 75 A n 1 76 C n 1 77 C n 1 78 U n 1 79 U n 1 80 C n 1 81 U n 1 82 G n 1 83 U n 1 84 C n 1 85 C n 1 86 C n 1 87 G n 1 88 C n 1 89 A n 1 90 C n 1 91 C n 1 92 C n 1 93 G n 1 94 A n 1 95 C n 1 96 A n 1 97 G n 1 98 C n 1 99 U n 1 100 A n 1 101 A n 1 102 C n 1 103 U n 1 104 C n 1 105 C n 1 106 G n 1 107 G n 1 108 A n 1 109 G n 1 110 G n 1 111 C n 1 112 A n 1 113 A n 1 114 U n 1 115 A n 1 116 A n 1 117 A n 1 118 G n 1 119 G n 1 120 A n 1 121 A n 1 122 G n 1 123 G n 1 124 A n 1 125 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 125 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-Fluc(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905932 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6N5N _struct_ref.pdbx_db_accession 6N5N _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6N5N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 125 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6N5N _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 125 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 125 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2BA non-polymer . ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 'C20 H24 N10 O12 P2' 658.412 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6N5N _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.37 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 77.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details 'Room Temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.9 M (NH4)2SO4, 0.2 M Li2SO4, and 0.1 M HEPES pH 7.4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-10-25 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6N5N _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.95 _reflns.d_resolution_low 75.112 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18748 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.090 _reflns.pdbx_Rpim_I_all 0.020 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.95 _reflns_shell.d_res_low 3.03 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1875 _reflns_shell.percent_possible_all 99.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 20.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 2.45 _reflns_shell.pdbx_Rpim_I_all 0.476 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.830 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 555.180 _refine.B_iso_mean 122.2787 _refine.B_iso_min 48.220 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6N5N _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9510 _refine.ls_d_res_low 75.1120 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18726 _refine.ls_number_reflns_R_free 1873 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7900 _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1700 _refine.ls_R_factor_R_free 0.1855 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1683 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4QK8 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.2400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.9510 _refine_hist.d_res_low 75.1120 _refine_hist.pdbx_number_atoms_ligand 102 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2784 _refine_hist.pdbx_number_residues_total 125 _refine_hist.pdbx_B_iso_mean_ligand 75.77 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2682 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.9511 3.0309 1377 . 138 1239 99.0000 . . . 0.4123 0.0000 0.3955 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.0309 3.1201 1426 . 143 1283 100.0000 . . . 0.3207 0.0000 0.2906 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.1201 3.2208 1406 . 140 1266 100.0000 . . . 0.3232 0.0000 0.2585 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.2208 3.3359 1441 . 145 1296 100.0000 . . . 0.3298 0.0000 0.2314 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.3359 3.4695 1420 . 140 1280 100.0000 . . . 0.2671 0.0000 0.2136 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.4695 3.6274 1425 . 143 1282 100.0000 . . . 0.2185 0.0000 0.2180 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.6274 3.8187 1438 . 144 1294 100.0000 . . . 0.1956 0.0000 0.1771 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.8187 4.0579 1430 . 143 1287 100.0000 . . . 0.1922 0.0000 0.1716 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 4.0579 4.3712 1443 . 144 1299 100.0000 . . . 0.2027 0.0000 0.1583 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 4.3712 4.8110 1445 . 145 1300 100.0000 . . . 0.1580 0.0000 0.1444 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 4.8110 5.5070 1458 . 146 1312 100.0000 . . . 0.1477 0.0000 0.1426 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 5.5070 6.9374 1467 . 146 1321 100.0000 . . . 0.1437 0.0000 0.1440 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 6.9374 75.1364 1550 . 156 1394 100.0000 . . . 0.1524 0.0000 0.1443 . . . . . . 13 . . . # _struct.entry_id 6N5N _struct.title 'Structure of Human pir-miRNA-208a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6N5N _struct_keywords.text 'microRNA, RNA processing, Protein-RNA interaction, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 5 ? H N N 3 ? I N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.570 ? ? metalc1 metalc ? ? A G 30 OP2 ? ? ? 1_555 D MG . MG ? ? A G 30 A MG 203 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc2 metalc ? ? A G 97 OP1 ? ? ? 1_555 D MG . MG ? ? A G 97 A MG 203 1_555 ? ? ? ? ? ? ? 2.463 ? ? metalc3 metalc ? ? A G 97 OP2 ? ? ? 1_555 F MG . MG ? ? A G 97 A MG 205 1_555 ? ? ? ? ? ? ? 2.571 ? ? metalc4 metalc ? ? A C 98 OP2 ? ? ? 1_555 D MG . MG ? ? A C 98 A MG 203 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc5 metalc ? ? A U 99 O4 ? ? ? 1_555 D MG . MG ? ? A U 99 A MG 203 1_555 ? ? ? ? ? ? ? 2.366 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A G 8 O6 ? ? A GTP 1 A G 8 1_555 ? ? ? ? ? ? 'GTP-G MISPAIR' ? ? ? hydrog2 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 112 N1 ? ? A U 4 A A 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 112 N6 ? ? A U 4 A A 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 111 N3 ? ? A G 5 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 111 O2 ? ? A G 5 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 111 N4 ? ? A G 5 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 110 N1 ? ? A C 6 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 110 O6 ? ? A C 6 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 110 N2 ? ? A C 6 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 109 N1 ? ? A C 7 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 109 O6 ? ? A C 7 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 109 N2 ? ? A C 7 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 108 N7 ? ? A G 8 A A 108 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 108 N6 ? ? A G 8 A A 108 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog15 hydrog ? ? A A 9 N3 ? ? ? 1_555 A G 106 N2 ? ? A A 9 A G 106 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog16 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 23 O2 ? ? A U 11 A U 23 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog17 hydrog ? ? A U 11 O4 ? ? ? 1_555 A U 23 N3 ? ? A U 11 A U 23 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog18 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 12 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 12 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 12 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 13 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 13 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 13 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 14 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 14 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 14 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 19 O4 ? ? A A 15 A U 19 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog28 hydrog ? ? A U 16 O2 ? ? ? 1_555 A U 19 N3 ? ? A U 16 A U 19 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog29 hydrog ? ? A A 24 N6 ? ? ? 1_555 A G 107 N3 ? ? A A 24 A G 107 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog30 hydrog ? ? A A 24 N7 ? ? ? 1_555 A G 107 N2 ? ? A A 24 A G 107 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog31 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 106 N1 ? ? A C 25 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 106 O6 ? ? A C 25 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 106 N2 ? ? A C 25 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 105 N3 ? ? A G 26 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 105 O2 ? ? A G 26 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 105 N4 ? ? A G 26 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 104 N3 ? ? A G 27 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 104 O2 ? ? A G 27 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 104 N4 ? ? A G 27 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 28 N1 ? ? ? 1_555 A U 103 N3 ? ? A A 28 A U 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A A 28 N6 ? ? ? 1_555 A U 103 O4 ? ? A A 28 A U 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 102 N3 ? ? A G 29 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 102 O2 ? ? A G 29 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 102 N4 ? ? A G 29 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 30 N2 ? ? ? 1_555 A A 101 N7 ? ? A G 30 A A 101 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog46 hydrog ? ? A G 30 N3 ? ? ? 1_555 A A 101 N6 ? ? A G 30 A A 101 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog47 hydrog ? ? A C 33 N4 ? ? ? 1_555 A C 98 O2 ? ? A C 33 A C 98 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog48 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 97 N1 ? ? A C 34 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 97 O6 ? ? A C 34 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 97 N2 ? ? A C 34 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 40 N3 ? ? ? 1_555 A A 94 N1 ? ? A U 40 A A 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A U 40 O4 ? ? ? 1_555 A A 94 N6 ? ? A U 40 A A 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 42 O6 ? ? ? 1_555 A G 93 N2 ? ? A G 42 A G 93 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog54 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 95 N3 ? ? A G 42 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 95 O2 ? ? A G 42 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 95 N4 ? ? A G 42 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 43 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 43 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 43 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 43 N2 ? ? ? 1_555 A A 96 N1 ? ? A G 43 A A 96 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog61 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 91 N3 ? ? A G 44 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 91 O2 ? ? A G 44 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 91 N4 ? ? A G 44 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 45 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 45 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 45 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 46 N3 ? ? ? 1_555 A A 89 N1 ? ? A U 46 A A 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A U 46 O4 ? ? ? 1_555 A A 89 N6 ? ? A U 46 A A 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A U 47 O2 ? ? ? 1_555 A C 88 N4 ? ? A U 47 A C 88 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog70 hydrog ? ? A A 48 N3 ? ? ? 1_555 A G 70 N2 ? ? A A 48 A G 70 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog71 hydrog ? ? A U 50 N3 ? ? ? 1_555 A U 68 O2 ? ? A U 50 A U 68 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog72 hydrog ? ? A U 50 O4 ? ? ? 1_555 A U 68 N3 ? ? A U 50 A U 68 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog73 hydrog ? ? A C 51 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 51 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 51 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 51 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 51 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 51 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A U 52 N3 ? ? ? 1_555 A A 66 N1 ? ? A U 52 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A U 52 O4 ? ? ? 1_555 A A 66 N6 ? ? A U 52 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 53 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 53 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 53 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 54 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 54 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 54 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 54 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 54 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 54 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A A 55 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 55 A U 63 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog85 hydrog ? ? A G 56 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 56 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 56 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 56 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 56 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 56 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A A 69 N6 ? ? ? 1_555 A G 87 N3 ? ? A A 69 A G 87 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog89 hydrog ? ? A A 69 N7 ? ? ? 1_555 A G 87 N2 ? ? A A 69 A G 87 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog90 hydrog ? ? A G 70 N1 ? ? ? 1_555 A C 86 N3 ? ? A G 70 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 70 N2 ? ? ? 1_555 A C 86 O2 ? ? A G 70 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 70 O6 ? ? ? 1_555 A C 86 N4 ? ? A G 70 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 71 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 71 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 71 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 71 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 71 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 71 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 72 N1 ? ? ? 1_555 A C 84 N3 ? ? A G 72 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A G 72 N2 ? ? ? 1_555 A C 84 O2 ? ? A G 72 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A G 72 O6 ? ? ? 1_555 A C 84 N4 ? ? A G 72 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A A 73 N1 ? ? ? 1_555 A U 83 N3 ? ? A A 73 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A A 73 N6 ? ? ? 1_555 A U 83 O4 ? ? A A 73 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A U 74 N3 ? ? ? 1_555 A G 82 O6 ? ? A U 74 A G 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog102 hydrog ? ? A U 74 O2 ? ? ? 1_555 A G 82 N1 ? ? A U 74 A G 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog103 hydrog ? ? A C 76 N3 ? ? ? 1_555 A G 123 N1 ? ? A C 76 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A C 76 N4 ? ? ? 1_555 A G 123 O6 ? ? A C 76 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A C 76 O2 ? ? ? 1_555 A G 123 N2 ? ? A C 76 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A C 77 N3 ? ? ? 1_555 A G 122 N1 ? ? A C 77 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A C 77 N4 ? ? ? 1_555 A G 122 O6 ? ? A C 77 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A C 77 O2 ? ? ? 1_555 A G 122 N2 ? ? A C 77 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A U 78 N3 ? ? ? 1_555 A A 121 N1 ? ? A U 78 A A 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A U 78 O4 ? ? ? 1_555 A A 121 N6 ? ? A U 78 A A 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A U 79 N3 ? ? ? 1_555 A A 120 N1 ? ? A U 79 A A 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A U 79 O4 ? ? ? 1_555 A A 120 N6 ? ? A U 79 A A 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A C 80 N3 ? ? ? 1_555 A G 119 N1 ? ? A C 80 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A C 80 N4 ? ? ? 1_555 A G 119 O6 ? ? A C 80 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A C 80 O2 ? ? ? 1_555 A G 119 N2 ? ? A C 80 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A U 81 N3 ? ? ? 1_555 A G 118 O6 ? ? A U 81 A G 118 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog117 hydrog ? ? A U 81 O2 ? ? ? 1_555 A G 118 N1 ? ? A U 81 A G 118 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog118 hydrog ? ? A G 82 N2 ? ? ? 1_555 A A 116 N3 ? ? A G 82 A A 116 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog119 hydrog ? ? A C 92 O2 ? ? ? 1_555 A A 96 N6 ? ? A C 92 A A 96 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog120 hydrog ? ? A G 93 N3 ? ? ? 1_555 A C 95 N4 ? ? A G 93 A C 95 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2BA 201 ? 15 'binding site for residue 2BA A 201' AC2 Software A 2BA 202 ? 14 'binding site for residue 2BA A 202' AC3 Software A MG 203 ? 5 'binding site for residue MG A 203' AC4 Software A MG 205 ? 1 'binding site for residue MG A 205' AC5 Software A SO4 206 ? 3 'binding site for residue SO4 A 206' AC6 Software A SO4 208 ? 7 'binding site for residue SO4 A 208' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 15 C A 6 ? C A 6 . ? 1_555 ? 3 AC1 15 C A 7 ? C A 7 . ? 1_555 ? 4 AC1 15 G A 8 ? G A 8 . ? 1_555 ? 5 AC1 15 A A 48 ? A A 48 . ? 1_555 ? 6 AC1 15 G A 71 ? G A 71 . ? 1_555 ? 7 AC1 15 G A 72 ? G A 72 . ? 1_555 ? 8 AC1 15 A A 73 ? A A 73 . ? 1_555 ? 9 AC1 15 U A 74 ? U A 74 . ? 1_555 ? 10 AC1 15 A A 75 ? A A 75 . ? 1_555 ? 11 AC1 15 C A 85 ? C A 85 . ? 1_555 ? 12 AC1 15 C A 86 ? C A 86 . ? 1_555 ? 13 AC1 15 G A 110 ? G A 110 . ? 1_555 ? 14 AC1 15 C A 111 ? C A 111 . ? 1_555 ? 15 AC1 15 A A 112 ? A A 112 . ? 1_555 ? 16 AC2 14 A A 9 ? A A 9 . ? 1_555 ? 17 AC2 14 G A 26 ? G A 26 . ? 1_555 ? 18 AC2 14 G A 27 ? G A 27 . ? 1_555 ? 19 AC2 14 A A 28 ? A A 28 . ? 1_555 ? 20 AC2 14 G A 29 ? G A 29 . ? 1_555 ? 21 AC2 14 G A 44 ? G A 44 . ? 1_555 ? 22 AC2 14 G A 45 ? G A 45 . ? 1_555 ? 23 AC2 14 U A 46 ? U A 46 . ? 1_555 ? 24 AC2 14 U A 47 ? U A 47 . ? 1_555 ? 25 AC2 14 C A 91 ? C A 91 . ? 1_555 ? 26 AC2 14 C A 92 ? C A 92 . ? 1_555 ? 27 AC2 14 A A 96 ? A A 96 . ? 1_555 ? 28 AC2 14 C A 105 ? C A 105 . ? 1_555 ? 29 AC2 14 G A 106 ? G A 106 . ? 1_555 ? 30 AC3 5 G A 30 ? G A 30 . ? 1_555 ? 31 AC3 5 A A 96 ? A A 96 . ? 1_555 ? 32 AC3 5 G A 97 ? G A 97 . ? 1_555 ? 33 AC3 5 C A 98 ? C A 98 . ? 1_555 ? 34 AC3 5 U A 99 ? U A 99 . ? 1_555 ? 35 AC4 1 G A 97 ? G A 97 . ? 1_555 ? 36 AC5 3 A A 32 ? A A 32 . ? 1_555 ? 37 AC5 3 C A 98 ? C A 98 . ? 1_555 ? 38 AC5 3 U A 99 ? U A 99 . ? 1_555 ? 39 AC6 7 GTP A 1 ? GTP A 1 . ? 1_555 ? 40 AC6 7 G A 2 ? G A 2 . ? 1_555 ? 41 AC6 7 U A 3 ? U A 3 . ? 1_555 ? 42 AC6 7 C A 6 ? C A 6 . ? 1_555 ? 43 AC6 7 C A 7 ? C A 7 . ? 1_555 ? 44 AC6 7 G A 8 ? G A 8 . ? 1_555 ? 45 AC6 7 U A 11 ? U A 11 . ? 1_555 ? # _atom_sites.entry_id 6N5N _atom_sites.fract_transf_matrix[1][1] 0.008720 _atom_sites.fract_transf_matrix[1][2] 0.005034 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010069 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008710 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 C 18 18 18 C C A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 G 21 21 21 G G A . n A 1 22 G 22 22 22 G G A . n A 1 23 U 23 23 23 U U A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 G 26 26 26 G G A . n A 1 27 G 27 27 27 G G A . n A 1 28 A 28 28 28 A A A . n A 1 29 G 29 29 29 G G A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 A 32 32 32 A A A . n A 1 33 C 33 33 33 C C A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 C 36 36 36 C C A . n A 1 37 U 37 37 37 U U A . n A 1 38 U 38 38 38 U U A . n A 1 39 U 39 39 39 U U A . n A 1 40 U 40 40 40 U U A . n A 1 41 U 41 41 41 U U A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 G 44 44 44 G G A . n A 1 45 G 45 45 45 G G A . n A 1 46 U 46 46 46 U U A . n A 1 47 U 47 47 47 U U A . n A 1 48 A 48 48 48 A A A . n A 1 49 A 49 49 49 A A A . n A 1 50 U 50 50 50 U U A . n A 1 51 C 51 51 51 C C A . n A 1 52 U 52 52 52 U U A . n A 1 53 G 53 53 53 G G A . n A 1 54 C 54 54 54 C C A . n A 1 55 A 55 55 55 A A A . n A 1 56 G 56 56 56 G G A . n A 1 57 U 57 57 57 U U A . n A 1 58 G 58 58 58 G G A . n A 1 59 A 59 59 59 A A A . n A 1 60 A 60 60 60 A A A . n A 1 61 G 61 61 61 G G A . n A 1 62 C 62 62 62 C C A . n A 1 63 U 63 63 63 U U A . n A 1 64 G 64 64 64 G G A . n A 1 65 C 65 65 65 C C A . n A 1 66 A 66 66 66 A A A . n A 1 67 G 67 67 67 G G A . n A 1 68 U 68 68 68 U U A . n A 1 69 A 69 69 69 A A A . n A 1 70 G 70 70 70 G G A . n A 1 71 G 71 71 71 G G A . n A 1 72 G 72 72 72 G G A . n A 1 73 A 73 73 73 A A A . n A 1 74 U 74 74 74 U U A . n A 1 75 A 75 75 75 A A A . n A 1 76 C 76 76 76 C C A . n A 1 77 C 77 77 77 C C A . n A 1 78 U 78 78 78 U U A . n A 1 79 U 79 79 79 U U A . n A 1 80 C 80 80 80 C C A . n A 1 81 U 81 81 81 U U A . n A 1 82 G 82 82 82 G G A . n A 1 83 U 83 83 83 U U A . n A 1 84 C 84 84 84 C C A . n A 1 85 C 85 85 85 C C A . n A 1 86 C 86 86 86 C C A . n A 1 87 G 87 87 87 G G A . n A 1 88 C 88 88 88 C C A . n A 1 89 A 89 89 89 A A A . n A 1 90 C 90 90 90 C C A . n A 1 91 C 91 91 91 C C A . n A 1 92 C 92 92 92 C C A . n A 1 93 G 93 93 93 G G A . n A 1 94 A 94 94 94 A A A . n A 1 95 C 95 95 95 C C A . n A 1 96 A 96 96 96 A A A . n A 1 97 G 97 97 97 G G A . n A 1 98 C 98 98 98 C C A . n A 1 99 U 99 99 99 U U A . n A 1 100 A 100 100 100 A A A . n A 1 101 A 101 101 101 A A A . n A 1 102 C 102 102 102 C C A . n A 1 103 U 103 103 103 U U A . n A 1 104 C 104 104 104 C C A . n A 1 105 C 105 105 105 C C A . n A 1 106 G 106 106 106 G G A . n A 1 107 G 107 107 107 G G A . n A 1 108 A 108 108 108 A A A . n A 1 109 G 109 109 109 G G A . n A 1 110 G 110 110 110 G G A . n A 1 111 C 111 111 111 C C A . n A 1 112 A 112 112 112 A A A . n A 1 113 A 113 113 113 A A A . n A 1 114 U 114 114 114 U U A . n A 1 115 A 115 115 115 A A A . n A 1 116 A 116 116 116 A A A . n A 1 117 A 117 117 117 A A A . n A 1 118 G 118 118 118 G G A . n A 1 119 G 119 119 119 G G A . n A 1 120 A 120 120 120 A A A . n A 1 121 A 121 121 121 A A A . n A 1 122 G 122 122 122 G G A . n A 1 123 G 123 123 123 G G A . n A 1 124 A 124 124 124 A A A . n A 1 125 G 125 125 125 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2BA 1 201 201 2BA 2BA A . C 2 2BA 1 202 202 2BA 2BA A . D 3 MG 1 203 203 MG MG A . E 4 K 1 204 205 K K A . F 3 MG 1 205 206 MG MG A . G 5 SO4 1 206 208 SO4 SO4 A . H 3 MG 1 207 209 MG MG A . I 5 SO4 1 208 210 SO4 SO4 A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 30 ? A G 30 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP1 ? A G 97 ? A G 97 ? 1_555 83.3 ? 2 OP2 ? A G 30 ? A G 30 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 98 ? A C 98 ? 1_555 157.2 ? 3 OP1 ? A G 97 ? A G 97 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 98 ? A C 98 ? 1_555 82.6 ? 4 OP2 ? A G 30 ? A G 30 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 99 ? A U 99 ? 1_555 79.0 ? 5 OP1 ? A G 97 ? A G 97 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 99 ? A U 99 ? 1_555 80.6 ? 6 OP2 ? A C 98 ? A C 98 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 99 ? A U 99 ? 1_555 81.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-11-27 2 'Structure model' 1 1 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' chem_comp_atom 3 2 'Structure model' chem_comp_bond 4 2 'Structure model' database_2 5 2 'Structure model' entity 6 2 'Structure model' pdbx_entity_nonpoly 7 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.name' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_entity.pdbx_description' 5 2 'Structure model' '_pdbx_entity_nonpoly.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -72.787 16.156 -16.380 0.9798 1.4255 1.1336 0.1961 0.1576 -0.1270 0.0230 0.2097 0.1377 -0.0148 0.0290 0.0185 -0.5821 0.2451 -0.0000 -0.0945 0.1138 0.8211 0.5211 -0.4464 -1.9998 'X-RAY DIFFRACTION' 2 ? refined -45.795 11.159 -8.270 0.7365 0.6097 0.6952 -0.1326 0.0456 -0.0230 -0.0770 2.4098 0.8353 -0.1120 -0.4037 -0.7639 0.1399 -0.2412 -0.0000 -0.1197 0.0592 -0.2476 0.2361 -0.0514 0.0575 'X-RAY DIFFRACTION' 3 ? refined -41.238 25.767 -14.570 0.7921 0.7772 0.8261 -0.1716 0.0971 -0.0529 0.5968 0.5276 0.6524 0.5979 0.0649 0.6447 0.0522 0.1240 0.0000 0.0350 0.0171 -0.4450 -0.0197 -0.2234 0.5964 'X-RAY DIFFRACTION' 4 ? refined -36.691 29.446 -34.294 0.9988 0.8503 0.7846 -0.2554 0.2714 0.0894 1.9350 0.8075 1.8287 -0.4709 -0.6944 -1.3604 0.2330 -0.2619 -0.0162 -0.2170 0.4097 -0.2714 -0.4580 -1.2135 0.5075 'X-RAY DIFFRACTION' 5 ? refined -46.582 -0.172 -45.955 0.9442 0.8603 0.7010 0.2356 0.1137 -0.0098 0.3006 0.8380 0.2067 -0.8241 0.3448 -0.7838 0.2205 -0.2977 -0.0000 0.7102 0.2284 0.1987 -0.9623 0.2671 0.1909 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 11 A 24 '( CHAIN A AND RESID 11:24 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 25 A 37 '( CHAIN A AND ( RESID 25:37 OR RESID 98:108 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 98 A 108 '( CHAIN A AND ( RESID 25:37 OR RESID 98:108 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 3 A 41 A 50 '( CHAIN A AND ( RESID 41:50 OR RESID 89:97 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 3 A 89 A 97 '( CHAIN A AND ( RESID 41:50 OR RESID 89:97 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 4 A 51 A 75 '( CHAIN A AND ( RESID 51:75 OR RESID 83:88 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 4 A 83 A 88 '( CHAIN A AND ( RESID 51:75 OR RESID 83:88 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 5 A 77 A 82 '( CHAIN A AND ( RESID 77:82 OR RESID 119:125 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 5 A 119 A 125 '( CHAIN A AND ( RESID 77:82 OR RESID 119:125 ) )' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A GTP 1 ? ? P A G 2 ? ? "O5'" A G 2 ? ? 90.19 104.00 -13.81 1.90 Y 2 1 "O3'" A GTP 1 ? ? P A G 2 ? ? OP2 A G 2 ? ? 122.75 110.50 12.25 1.10 Y # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GTP 1 ? PG ? A GTP 1 PG 2 1 Y 1 A GTP 1 ? O1G ? A GTP 1 O1G 3 1 Y 1 A GTP 1 ? O2G ? A GTP 1 O2G 4 1 Y 1 A GTP 1 ? O3G ? A GTP 1 O3G # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2BA P P N R 1 2BA O1P O N N 2 2BA O2P O N N 3 2BA "O5'" O N N 4 2BA "C5'" C N N 5 2BA "C4'" C N R 6 2BA "O4'" O N N 7 2BA "C3'" C N S 8 2BA "O3'" O N N 9 2BA "C2'" C N R 10 2BA "O2'" O N N 11 2BA "C1'" C N R 12 2BA N9 N Y N 13 2BA C8 C Y N 14 2BA N7 N Y N 15 2BA C5 C Y N 16 2BA C6 C Y N 17 2BA N6 N N N 18 2BA N1 N Y N 19 2BA C2 C Y N 20 2BA N3 N Y N 21 2BA C4 C Y N 22 2BA P1 P N R 23 2BA O1P1 O N N 24 2BA O2P1 O N N 25 2BA "O5'1" O N N 26 2BA "C5'1" C N N 27 2BA "C4'1" C N R 28 2BA "O4'1" O N N 29 2BA "C3'1" C N S 30 2BA "O3'1" O N N 31 2BA "C2'1" C N R 32 2BA "O2'1" O N N 33 2BA "C1'1" C N R 34 2BA N91 N Y N 35 2BA C81 C Y N 36 2BA N71 N Y N 37 2BA C51 C Y N 38 2BA C61 C Y N 39 2BA N61 N N N 40 2BA N11 N Y N 41 2BA C21 C Y N 42 2BA N31 N Y N 43 2BA C41 C Y N 44 2BA "H5'" H N N 45 2BA "H5'A" H N N 46 2BA "H4'" H N N 47 2BA "H3'" H N N 48 2BA "H2'" H N N 49 2BA "HO2'" H N N 50 2BA "H1'" H N N 51 2BA H8 H N N 52 2BA HN6 H N N 53 2BA HN6A H N N 54 2BA H2 H N N 55 2BA "HC5'" H N N 56 2BA HC5A H N N 57 2BA "HC4'" H N N 58 2BA "HC3'" H N N 59 2BA "HC2'" H N N 60 2BA HO2A H N N 61 2BA "HC1'" H N N 62 2BA HC8 H N N 63 2BA H1N6 H N N 64 2BA H1NA H N N 65 2BA HC2 H N N 66 2BA H2P H N N 67 2BA H2OP H N N 68 A OP3 O N N 69 A P P N N 70 A OP1 O N N 71 A OP2 O N N 72 A "O5'" O N N 73 A "C5'" C N N 74 A "C4'" C N R 75 A "O4'" O N N 76 A "C3'" C N S 77 A "O3'" O N N 78 A "C2'" C N R 79 A "O2'" O N N 80 A "C1'" C N R 81 A N9 N Y N 82 A C8 C Y N 83 A N7 N Y N 84 A C5 C Y N 85 A C6 C Y N 86 A N6 N N N 87 A N1 N Y N 88 A C2 C Y N 89 A N3 N Y N 90 A C4 C Y N 91 A HOP3 H N N 92 A HOP2 H N N 93 A "H5'" H N N 94 A "H5''" H N N 95 A "H4'" H N N 96 A "H3'" H N N 97 A "HO3'" H N N 98 A "H2'" H N N 99 A "HO2'" H N N 100 A "H1'" H N N 101 A H8 H N N 102 A H61 H N N 103 A H62 H N N 104 A H2 H N N 105 C OP3 O N N 106 C P P N N 107 C OP1 O N N 108 C OP2 O N N 109 C "O5'" O N N 110 C "C5'" C N N 111 C "C4'" C N R 112 C "O4'" O N N 113 C "C3'" C N S 114 C "O3'" O N N 115 C "C2'" C N R 116 C "O2'" O N N 117 C "C1'" C N R 118 C N1 N N N 119 C C2 C N N 120 C O2 O N N 121 C N3 N N N 122 C C4 C N N 123 C N4 N N N 124 C C5 C N N 125 C C6 C N N 126 C HOP3 H N N 127 C HOP2 H N N 128 C "H5'" H N N 129 C "H5''" H N N 130 C "H4'" H N N 131 C "H3'" H N N 132 C "HO3'" H N N 133 C "H2'" H N N 134 C "HO2'" H N N 135 C "H1'" H N N 136 C H41 H N N 137 C H42 H N N 138 C H5 H N N 139 C H6 H N N 140 G OP3 O N N 141 G P P N N 142 G OP1 O N N 143 G OP2 O N N 144 G "O5'" O N N 145 G "C5'" C N N 146 G "C4'" C N R 147 G "O4'" O N N 148 G "C3'" C N S 149 G "O3'" O N N 150 G "C2'" C N R 151 G "O2'" O N N 152 G "C1'" C N R 153 G N9 N Y N 154 G C8 C Y N 155 G N7 N Y N 156 G C5 C Y N 157 G C6 C N N 158 G O6 O N N 159 G N1 N N N 160 G C2 C N N 161 G N2 N N N 162 G N3 N N N 163 G C4 C Y N 164 G HOP3 H N N 165 G HOP2 H N N 166 G "H5'" H N N 167 G "H5''" H N N 168 G "H4'" H N N 169 G "H3'" H N N 170 G "HO3'" H N N 171 G "H2'" H N N 172 G "HO2'" H N N 173 G "H1'" H N N 174 G H8 H N N 175 G H1 H N N 176 G H21 H N N 177 G H22 H N N 178 GTP PG P N N 179 GTP O1G O N N 180 GTP O2G O N N 181 GTP O3G O N N 182 GTP O3B O N N 183 GTP PB P N N 184 GTP O1B O N N 185 GTP O2B O N N 186 GTP O3A O N N 187 GTP PA P N N 188 GTP O1A O N N 189 GTP O2A O N N 190 GTP "O5'" O N N 191 GTP "C5'" C N N 192 GTP "C4'" C N R 193 GTP "O4'" O N N 194 GTP "C3'" C N S 195 GTP "O3'" O N N 196 GTP "C2'" C N R 197 GTP "O2'" O N N 198 GTP "C1'" C N R 199 GTP N9 N Y N 200 GTP C8 C Y N 201 GTP N7 N Y N 202 GTP C5 C Y N 203 GTP C6 C N N 204 GTP O6 O N N 205 GTP N1 N N N 206 GTP C2 C N N 207 GTP N2 N N N 208 GTP N3 N N N 209 GTP C4 C Y N 210 GTP HOG2 H N N 211 GTP HOG3 H N N 212 GTP HOB2 H N N 213 GTP HOA2 H N N 214 GTP "H5'" H N N 215 GTP "H5''" H N N 216 GTP "H4'" H N N 217 GTP "H3'" H N N 218 GTP "HO3'" H N N 219 GTP "H2'" H N N 220 GTP "HO2'" H N N 221 GTP "H1'" H N N 222 GTP H8 H N N 223 GTP HN1 H N N 224 GTP HN21 H N N 225 GTP HN22 H N N 226 K K K N N 227 MG MG MG N N 228 SO4 S S N N 229 SO4 O1 O N N 230 SO4 O2 O N N 231 SO4 O3 O N N 232 SO4 O4 O N N 233 U OP3 O N N 234 U P P N N 235 U OP1 O N N 236 U OP2 O N N 237 U "O5'" O N N 238 U "C5'" C N N 239 U "C4'" C N R 240 U "O4'" O N N 241 U "C3'" C N S 242 U "O3'" O N N 243 U "C2'" C N R 244 U "O2'" O N N 245 U "C1'" C N R 246 U N1 N N N 247 U C2 C N N 248 U O2 O N N 249 U N3 N N N 250 U C4 C N N 251 U O4 O N N 252 U C5 C N N 253 U C6 C N N 254 U HOP3 H N N 255 U HOP2 H N N 256 U "H5'" H N N 257 U "H5''" H N N 258 U "H4'" H N N 259 U "H3'" H N N 260 U "HO3'" H N N 261 U "H2'" H N N 262 U "HO2'" H N N 263 U "H1'" H N N 264 U H3 H N N 265 U H5 H N N 266 U H6 H N N 267 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2BA P O1P doub N N 1 2BA P O2P sing N N 2 2BA P "O5'" sing N N 3 2BA P "O3'1" sing N N 4 2BA "O5'" "C5'" sing N N 5 2BA "C5'" "C4'" sing N N 6 2BA "C4'" "O4'" sing N N 7 2BA "C4'" "C3'" sing N N 8 2BA "O4'" "C1'" sing N N 9 2BA "C3'" "O3'" sing N N 10 2BA "C3'" "C2'" sing N N 11 2BA "O3'" P1 sing N N 12 2BA "C2'" "O2'" sing N N 13 2BA "C2'" "C1'" sing N N 14 2BA "C1'" N9 sing N N 15 2BA N9 C8 sing Y N 16 2BA N9 C4 sing Y N 17 2BA C8 N7 doub Y N 18 2BA N7 C5 sing Y N 19 2BA C5 C6 doub Y N 20 2BA C5 C4 sing Y N 21 2BA C6 N6 sing N N 22 2BA C6 N1 sing Y N 23 2BA N1 C2 doub Y N 24 2BA C2 N3 sing Y N 25 2BA N3 C4 doub Y N 26 2BA P1 O1P1 doub N N 27 2BA P1 O2P1 sing N N 28 2BA P1 "O5'1" sing N N 29 2BA "O5'1" "C5'1" sing N N 30 2BA "C5'1" "C4'1" sing N N 31 2BA "C4'1" "O4'1" sing N N 32 2BA "C4'1" "C3'1" sing N N 33 2BA "O4'1" "C1'1" sing N N 34 2BA "C3'1" "O3'1" sing N N 35 2BA "C3'1" "C2'1" sing N N 36 2BA "C2'1" "O2'1" sing N N 37 2BA "C2'1" "C1'1" sing N N 38 2BA "C1'1" N91 sing N N 39 2BA N91 C81 sing Y N 40 2BA N91 C41 sing Y N 41 2BA C81 N71 doub Y N 42 2BA N71 C51 sing Y N 43 2BA C51 C61 doub Y N 44 2BA C51 C41 sing Y N 45 2BA C61 N61 sing N N 46 2BA C61 N11 sing Y N 47 2BA N11 C21 doub Y N 48 2BA C21 N31 sing Y N 49 2BA N31 C41 doub Y N 50 2BA "C5'" "H5'" sing N N 51 2BA "C5'" "H5'A" sing N N 52 2BA "C4'" "H4'" sing N N 53 2BA "C3'" "H3'" sing N N 54 2BA "C2'" "H2'" sing N N 55 2BA "O2'" "HO2'" sing N N 56 2BA "C1'" "H1'" sing N N 57 2BA C8 H8 sing N N 58 2BA N6 HN6 sing N N 59 2BA N6 HN6A sing N N 60 2BA C2 H2 sing N N 61 2BA "C5'1" "HC5'" sing N N 62 2BA "C5'1" HC5A sing N N 63 2BA "C4'1" "HC4'" sing N N 64 2BA "C3'1" "HC3'" sing N N 65 2BA "C2'1" "HC2'" sing N N 66 2BA "O2'1" HO2A sing N N 67 2BA "C1'1" "HC1'" sing N N 68 2BA C81 HC8 sing N N 69 2BA N61 H1N6 sing N N 70 2BA N61 H1NA sing N N 71 2BA C21 HC2 sing N N 72 2BA O2P H2P sing N N 73 2BA O2P1 H2OP sing N N 74 A OP3 P sing N N 75 A OP3 HOP3 sing N N 76 A P OP1 doub N N 77 A P OP2 sing N N 78 A P "O5'" sing N N 79 A OP2 HOP2 sing N N 80 A "O5'" "C5'" sing N N 81 A "C5'" "C4'" sing N N 82 A "C5'" "H5'" sing N N 83 A "C5'" "H5''" sing N N 84 A "C4'" "O4'" sing N N 85 A "C4'" "C3'" sing N N 86 A "C4'" "H4'" sing N N 87 A "O4'" "C1'" sing N N 88 A "C3'" "O3'" sing N N 89 A "C3'" "C2'" sing N N 90 A "C3'" "H3'" sing N N 91 A "O3'" "HO3'" sing N N 92 A "C2'" "O2'" sing N N 93 A "C2'" "C1'" sing N N 94 A "C2'" "H2'" sing N N 95 A "O2'" "HO2'" sing N N 96 A "C1'" N9 sing N N 97 A "C1'" "H1'" sing N N 98 A N9 C8 sing Y N 99 A N9 C4 sing Y N 100 A C8 N7 doub Y N 101 A C8 H8 sing N N 102 A N7 C5 sing Y N 103 A C5 C6 sing Y N 104 A C5 C4 doub Y N 105 A C6 N6 sing N N 106 A C6 N1 doub Y N 107 A N6 H61 sing N N 108 A N6 H62 sing N N 109 A N1 C2 sing Y N 110 A C2 N3 doub Y N 111 A C2 H2 sing N N 112 A N3 C4 sing Y N 113 C OP3 P sing N N 114 C OP3 HOP3 sing N N 115 C P OP1 doub N N 116 C P OP2 sing N N 117 C P "O5'" sing N N 118 C OP2 HOP2 sing N N 119 C "O5'" "C5'" sing N N 120 C "C5'" "C4'" sing N N 121 C "C5'" "H5'" sing N N 122 C "C5'" "H5''" sing N N 123 C "C4'" "O4'" sing N N 124 C "C4'" "C3'" sing N N 125 C "C4'" "H4'" sing N N 126 C "O4'" "C1'" sing N N 127 C "C3'" "O3'" sing N N 128 C "C3'" "C2'" sing N N 129 C "C3'" "H3'" sing N N 130 C "O3'" "HO3'" sing N N 131 C "C2'" "O2'" sing N N 132 C "C2'" "C1'" sing N N 133 C "C2'" "H2'" sing N N 134 C "O2'" "HO2'" sing N N 135 C "C1'" N1 sing N N 136 C "C1'" "H1'" sing N N 137 C N1 C2 sing N N 138 C N1 C6 sing N N 139 C C2 O2 doub N N 140 C C2 N3 sing N N 141 C N3 C4 doub N N 142 C C4 N4 sing N N 143 C C4 C5 sing N N 144 C N4 H41 sing N N 145 C N4 H42 sing N N 146 C C5 C6 doub N N 147 C C5 H5 sing N N 148 C C6 H6 sing N N 149 G OP3 P sing N N 150 G OP3 HOP3 sing N N 151 G P OP1 doub N N 152 G P OP2 sing N N 153 G P "O5'" sing N N 154 G OP2 HOP2 sing N N 155 G "O5'" "C5'" sing N N 156 G "C5'" "C4'" sing N N 157 G "C5'" "H5'" sing N N 158 G "C5'" "H5''" sing N N 159 G "C4'" "O4'" sing N N 160 G "C4'" "C3'" sing N N 161 G "C4'" "H4'" sing N N 162 G "O4'" "C1'" sing N N 163 G "C3'" "O3'" sing N N 164 G "C3'" "C2'" sing N N 165 G "C3'" "H3'" sing N N 166 G "O3'" "HO3'" sing N N 167 G "C2'" "O2'" sing N N 168 G "C2'" "C1'" sing N N 169 G "C2'" "H2'" sing N N 170 G "O2'" "HO2'" sing N N 171 G "C1'" N9 sing N N 172 G "C1'" "H1'" sing N N 173 G N9 C8 sing Y N 174 G N9 C4 sing Y N 175 G C8 N7 doub Y N 176 G C8 H8 sing N N 177 G N7 C5 sing Y N 178 G C5 C6 sing N N 179 G C5 C4 doub Y N 180 G C6 O6 doub N N 181 G C6 N1 sing N N 182 G N1 C2 sing N N 183 G N1 H1 sing N N 184 G C2 N2 sing N N 185 G C2 N3 doub N N 186 G N2 H21 sing N N 187 G N2 H22 sing N N 188 G N3 C4 sing N N 189 GTP PG O1G doub N N 190 GTP PG O2G sing N N 191 GTP PG O3G sing N N 192 GTP PG O3B sing N N 193 GTP O2G HOG2 sing N N 194 GTP O3G HOG3 sing N N 195 GTP O3B PB sing N N 196 GTP PB O1B doub N N 197 GTP PB O2B sing N N 198 GTP PB O3A sing N N 199 GTP O2B HOB2 sing N N 200 GTP O3A PA sing N N 201 GTP PA O1A doub N N 202 GTP PA O2A sing N N 203 GTP PA "O5'" sing N N 204 GTP O2A HOA2 sing N N 205 GTP "O5'" "C5'" sing N N 206 GTP "C5'" "C4'" sing N N 207 GTP "C5'" "H5'" sing N N 208 GTP "C5'" "H5''" sing N N 209 GTP "C4'" "O4'" sing N N 210 GTP "C4'" "C3'" sing N N 211 GTP "C4'" "H4'" sing N N 212 GTP "O4'" "C1'" sing N N 213 GTP "C3'" "O3'" sing N N 214 GTP "C3'" "C2'" sing N N 215 GTP "C3'" "H3'" sing N N 216 GTP "O3'" "HO3'" sing N N 217 GTP "C2'" "O2'" sing N N 218 GTP "C2'" "C1'" sing N N 219 GTP "C2'" "H2'" sing N N 220 GTP "O2'" "HO2'" sing N N 221 GTP "C1'" N9 sing N N 222 GTP "C1'" "H1'" sing N N 223 GTP N9 C8 sing Y N 224 GTP N9 C4 sing Y N 225 GTP C8 N7 doub Y N 226 GTP C8 H8 sing N N 227 GTP N7 C5 sing Y N 228 GTP C5 C6 sing N N 229 GTP C5 C4 doub Y N 230 GTP C6 O6 doub N N 231 GTP C6 N1 sing N N 232 GTP N1 C2 sing N N 233 GTP N1 HN1 sing N N 234 GTP C2 N2 sing N N 235 GTP C2 N3 doub N N 236 GTP N2 HN21 sing N N 237 GTP N2 HN22 sing N N 238 GTP N3 C4 sing N N 239 SO4 S O1 doub N N 240 SO4 S O2 doub N N 241 SO4 S O3 sing N N 242 SO4 S O4 sing N N 243 U OP3 P sing N N 244 U OP3 HOP3 sing N N 245 U P OP1 doub N N 246 U P OP2 sing N N 247 U P "O5'" sing N N 248 U OP2 HOP2 sing N N 249 U "O5'" "C5'" sing N N 250 U "C5'" "C4'" sing N N 251 U "C5'" "H5'" sing N N 252 U "C5'" "H5''" sing N N 253 U "C4'" "O4'" sing N N 254 U "C4'" "C3'" sing N N 255 U "C4'" "H4'" sing N N 256 U "O4'" "C1'" sing N N 257 U "C3'" "O3'" sing N N 258 U "C3'" "C2'" sing N N 259 U "C3'" "H3'" sing N N 260 U "O3'" "HO3'" sing N N 261 U "C2'" "O2'" sing N N 262 U "C2'" "C1'" sing N N 263 U "C2'" "H2'" sing N N 264 U "O2'" "HO2'" sing N N 265 U "C1'" N1 sing N N 266 U "C1'" "H1'" sing N N 267 U N1 C2 sing N N 268 U N1 C6 sing N N 269 U C2 O2 doub N N 270 U C2 N3 sing N N 271 U N3 C4 sing N N 272 U N3 H3 sing N N 273 U C4 O4 doub N N 274 U C4 C5 sing N N 275 U C5 C6 doub N N 276 U C5 H5 sing N N 277 U C6 H6 sing N N 278 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6N5N 'double helix' 6N5N 'a-form double helix' 6N5N 'hairpin loop' 6N5N 'mismatched base pair' 6N5N 'internal loop' 6N5N 'quadruple helix' 6N5N 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A G 8 1_555 3.469 1.556 -0.316 -62.004 17.636 -74.137 1 A_GTP1:G8_A A 1 ? A 8 ? ? 1 1 A G 109 1_555 A C 7 1_555 -0.172 -0.185 -0.278 -13.759 5.321 3.060 2 A_G109:C7_A A 109 ? A 7 ? 19 1 1 A G 110 1_555 A C 6 1_555 -0.492 -0.196 -0.275 -6.388 -5.356 2.999 3 A_G110:C6_A A 110 ? A 6 ? 19 1 1 A C 111 1_555 A G 5 1_555 -0.004 -0.170 -0.084 1.554 -9.879 -0.153 4 A_C111:G5_A A 111 ? A 5 ? 19 1 1 A A 112 1_555 A U 4 1_555 0.769 -0.093 0.009 -9.524 -9.735 0.301 5 A_A112:U4_A A 112 ? A 4 ? 20 1 1 A U 19 1_555 A A 15 1_555 0.581 2.989 0.204 1.174 10.218 -88.431 6 A_U19:A15_A A 19 ? A 15 ? ? ? 1 A C 20 1_555 A G 14 1_555 -0.315 -0.300 -0.204 7.096 -16.246 -14.534 7 A_C20:G14_A A 20 ? A 14 ? 19 1 1 A G 21 1_555 A C 13 1_555 0.040 -0.378 -0.240 0.545 -2.838 -0.498 8 A_G21:C13_A A 21 ? A 13 ? 19 1 1 A G 22 1_555 A C 12 1_555 0.138 -0.058 -0.431 -0.166 -5.235 1.006 9 A_G22:C12_A A 22 ? A 12 ? 19 1 1 A U 23 1_555 A U 11 1_555 2.273 -2.017 -0.352 2.959 -4.793 13.328 10 A_U23:U11_A A 23 ? A 11 ? 16 1 1 A A 24 1_555 A G 107 1_555 -6.936 -4.671 0.256 3.394 -16.891 -10.463 11 A_A24:G107_A A 24 ? A 107 ? 11 10 1 A C 25 1_555 A G 106 1_555 -0.151 -0.191 -0.008 2.491 -4.444 -0.622 12 A_C25:G106_A A 25 ? A 106 ? 19 1 1 A G 26 1_555 A C 105 1_555 0.012 -0.229 -0.621 -10.268 -6.751 3.485 13 A_G26:C105_A A 26 ? A 105 ? 19 1 1 A G 27 1_555 A C 104 1_555 -0.082 -0.179 -0.298 -6.421 3.458 -2.201 14 A_G27:C104_A A 27 ? A 104 ? 19 1 1 A A 28 1_555 A U 103 1_555 -0.128 -0.111 0.013 3.672 1.947 2.230 15 A_A28:U103_A A 28 ? A 103 ? 20 1 1 A G 29 1_555 A C 102 1_555 -0.097 -0.294 -0.367 -4.214 -10.644 0.897 16 A_G29:C102_A A 29 ? A 102 ? 19 1 1 A G 30 1_555 A A 101 1_555 6.778 -3.999 -0.044 -8.449 -13.158 -6.495 17 A_G30:A101_A A 30 ? A 101 ? 11 10 1 A C 33 1_555 A C 98 1_555 -4.039 -1.806 0.185 2.645 -12.486 1.687 18 A_C33:C98_A A 33 ? A 98 ? ? 1 1 A C 34 1_555 A G 97 1_555 0.104 -0.104 0.038 10.443 -9.097 1.979 19 A_C34:G97_A A 34 ? A 97 ? 19 1 1 A C 88 1_555 A U 47 1_555 -6.960 -4.753 0.775 -27.132 9.326 -8.327 20 A_C88:U47_A A 88 ? A 47 ? ? ? 1 A A 89 1_555 A U 46 1_555 -0.170 -0.017 -0.348 -11.687 12.855 0.775 21 A_A89:U46_A A 89 ? A 46 ? 20 1 1 A C 90 1_555 A G 45 1_555 -0.171 -0.301 -0.278 5.946 1.139 -1.875 22 A_C90:G45_A A 90 ? A 45 ? 19 1 1 A C 91 1_555 A G 44 1_555 -0.005 -0.118 -0.456 7.226 -6.444 2.881 23 A_C91:G44_A A 91 ? A 44 ? 19 1 1 A C 92 1_555 A G 43 1_555 0.190 -0.176 -0.090 1.671 4.100 0.416 24 A_C92:G43_A A 92 ? A 43 ? 19 1 1 A C 95 1_555 A G 42 1_555 -0.072 -0.198 -0.015 -5.610 0.686 -0.647 25 A_C95:G42_A A 95 ? A 42 ? 19 1 1 A A 94 1_555 A U 40 1_555 0.006 -0.311 -0.026 2.872 0.838 -1.202 26 A_A94:U40_A A 94 ? A 40 ? 20 1 1 A C 62 1_555 A G 56 1_555 0.611 -0.470 0.483 14.415 -3.913 3.035 27 A_C62:G56_A A 62 ? A 56 ? 19 1 1 A U 63 1_555 A A 55 1_555 -0.971 0.462 -0.020 7.511 -20.032 9.993 28 A_U63:A55_A A 63 ? A 55 ? ? ? 1 A G 64 1_555 A C 54 1_555 -0.631 0.087 -0.658 -0.980 6.859 13.100 29 A_G64:C54_A A 64 ? A 54 ? 19 1 1 A C 65 1_555 A G 53 1_555 -0.183 -0.395 -1.244 7.549 -19.528 -13.164 30 A_C65:G53_A A 65 ? A 53 ? 19 1 1 A A 66 1_555 A U 52 1_555 0.911 -0.043 -0.095 -11.396 -5.967 -1.062 31 A_A66:U52_A A 66 ? A 52 ? 20 1 1 A G 67 1_555 A C 51 1_555 0.213 -0.165 -0.408 -8.335 -14.085 3.883 32 A_G67:C51_A A 67 ? A 51 ? 19 1 1 A U 68 1_555 A U 50 1_555 1.913 -1.728 0.040 -2.037 -17.784 15.201 33 A_U68:U50_A A 68 ? A 50 ? 16 1 1 A A 69 1_555 A G 87 1_555 -7.000 -4.440 0.026 -2.552 -7.102 -9.759 34 A_A69:G87_A A 69 ? A 87 ? 11 10 1 A G 70 1_555 A C 86 1_555 -0.063 -0.280 -0.293 0.411 -5.108 2.228 35 A_G70:C86_A A 70 ? A 86 ? 19 1 1 A G 71 1_555 A C 85 1_555 -0.134 -0.202 -0.499 -8.459 -6.091 3.993 36 A_G71:C85_A A 71 ? A 85 ? 19 1 1 A G 72 1_555 A C 84 1_555 -0.024 -0.110 0.000 -0.425 -0.569 -1.688 37 A_G72:C84_A A 72 ? A 84 ? 19 1 1 A A 73 1_555 A U 83 1_555 0.142 -0.051 -0.136 4.575 -7.754 1.185 38 A_A73:U83_A A 73 ? A 83 ? 20 1 1 A U 74 1_555 A G 82 1_555 2.114 -0.642 -0.372 13.150 -5.434 0.392 39 A_U74:G82_A A 74 ? A 82 ? 28 1 1 A G 118 1_555 A U 81 1_555 -2.306 -0.865 -0.350 -4.110 -7.666 -7.542 40 A_G118:U81_A A 118 ? A 81 ? 28 1 1 A G 119 1_555 A C 80 1_555 0.492 -0.007 -0.321 -8.185 -12.950 2.303 41 A_G119:C80_A A 119 ? A 80 ? 19 1 1 A A 120 1_555 A U 79 1_555 -0.250 -0.049 -0.189 -5.523 -10.171 1.272 42 A_A120:U79_A A 120 ? A 79 ? 20 1 1 A A 121 1_555 A U 78 1_555 0.009 0.036 0.327 -2.504 -1.578 -1.389 43 A_A121:U78_A A 121 ? A 78 ? 20 1 1 A G 122 1_555 A C 77 1_555 -0.245 -0.312 -0.094 -1.982 -10.208 -1.740 44 A_G122:C77_A A 122 ? A 77 ? 19 1 1 A G 123 1_555 A C 76 1_555 -0.166 -0.231 -0.337 -12.149 -15.464 1.040 45 A_G123:C76_A A 123 ? A 76 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A G 8 1_555 A G 109 1_555 A C 7 1_555 -5.081 -1.585 2.756 1.375 -16.644 80.321 -0.842 3.913 2.913 -12.778 -1.055 81.750 1 AA_GTP1G109:C7G8_AA A 1 ? A 8 ? A 109 ? A 7 ? 1 A G 109 1_555 A C 7 1_555 A G 110 1_555 A C 6 1_555 0.631 -2.236 3.318 1.772 4.726 23.470 -6.835 -0.972 2.858 11.449 -4.292 24.000 2 AA_G109G110:C6C7_AA A 109 ? A 7 ? A 110 ? A 6 ? 1 A G 110 1_555 A C 6 1_555 A C 111 1_555 A G 5 1_555 0.643 -2.241 3.078 2.080 1.707 27.992 -4.984 -0.870 2.978 3.518 -4.287 28.118 3 AA_G110C111:G5C6_AA A 110 ? A 6 ? A 111 ? A 5 ? 1 A C 111 1_555 A G 5 1_555 A A 112 1_555 A U 4 1_555 -0.477 -1.707 3.532 2.131 5.085 39.578 -3.110 0.954 3.268 7.465 -3.129 39.945 4 AA_C111A112:U4G5_AA A 111 ? A 5 ? A 112 ? A 4 ? 1 A U 19 1_555 A A 15 1_555 A C 20 1_555 A G 14 1_555 -2.129 0.538 3.069 -2.509 -12.688 -25.910 1.597 -4.794 2.807 26.313 -5.203 -28.909 5 AA_U19C20:G14A15_AA A 19 ? A 15 ? A 20 ? A 14 ? 1 A C 20 1_555 A G 14 1_555 A G 21 1_555 A C 13 1_555 0.406 -2.101 3.436 -0.243 11.595 31.512 -5.436 -0.742 2.524 20.500 0.430 33.528 6 AA_C20G21:C13G14_AA A 20 ? A 14 ? A 21 ? A 13 ? 1 A G 21 1_555 A C 13 1_555 A G 22 1_555 A C 12 1_555 0.513 -2.271 3.428 0.058 4.225 27.682 -5.691 -1.046 3.055 8.766 -0.121 27.996 7 AA_G21G22:C12C13_AA A 21 ? A 13 ? A 22 ? A 12 ? 1 A G 22 1_555 A C 12 1_555 A U 23 1_555 A U 11 1_555 0.452 -1.867 3.318 -1.497 4.775 37.175 -3.515 -0.895 3.044 7.449 2.336 37.498 8 AA_G22U23:U11C12_AA A 22 ? A 12 ? A 23 ? A 11 ? 1 A U 23 1_555 A U 11 1_555 A A 24 1_555 A G 107 1_555 0.598 0.118 3.240 -1.298 4.970 23.413 -1.310 -1.856 3.159 12.061 3.150 23.962 9 AA_U23A24:G107U11_AA A 23 ? A 11 ? A 24 ? A 107 ? 1 A A 24 1_555 A G 107 1_555 A C 25 1_555 A G 106 1_555 1.423 -0.959 3.381 -1.755 7.874 62.366 -1.278 -1.444 3.215 7.570 1.687 62.834 10 AA_A24C25:G106G107_AA A 24 ? A 107 ? A 25 ? A 106 ? 1 A C 25 1_555 A G 106 1_555 A G 26 1_555 A C 105 1_555 1.041 -2.555 3.730 6.840 5.601 29.021 -6.136 -0.466 3.343 10.863 -13.267 30.310 11 AA_C25G26:C105G106_AA A 25 ? A 106 ? A 26 ? A 105 ? 1 A G 26 1_555 A C 105 1_555 A G 27 1_555 A C 104 1_555 -1.004 -2.311 3.169 -4.304 3.049 25.976 -5.812 1.105 3.006 6.695 9.451 26.497 12 AA_G26G27:C104C105_AA A 26 ? A 105 ? A 27 ? A 104 ? 1 A G 27 1_555 A C 104 1_555 A A 28 1_555 A U 103 1_555 0.164 -2.042 3.141 -2.828 -2.853 29.454 -3.390 -0.906 3.290 -5.578 5.529 29.721 13 AA_G27A28:U103C104_AA A 27 ? A 104 ? A 28 ? A 103 ? 1 A A 28 1_555 A U 103 1_555 A G 29 1_555 A C 102 1_555 0.205 -1.970 3.623 5.599 2.688 31.763 -4.053 0.710 3.434 4.853 -10.109 32.349 14 AA_A28G29:C102U103_AA A 28 ? A 103 ? A 29 ? A 102 ? 1 A G 29 1_555 A C 102 1_555 A G 30 1_555 A A 101 1_555 -0.992 -0.824 3.554 0.616 8.657 60.409 -1.255 1.009 3.410 8.556 -0.609 60.971 15 AA_G29G30:A101C102_AA A 29 ? A 102 ? A 30 ? A 101 ? 1 A C 33 1_555 A C 98 1_555 A C 34 1_555 A G 97 1_555 0.334 -0.785 3.154 0.300 3.788 48.654 -1.226 -0.382 3.090 4.590 -0.363 48.793 16 AA_C33C34:G97C98_AA A 33 ? A 98 ? A 34 ? A 97 ? 1 A C 88 1_555 A U 47 1_555 A A 89 1_555 A U 46 1_555 0.866 -0.906 2.984 0.226 12.050 52.756 -1.656 -0.941 2.735 13.363 -0.250 54.019 17 AA_C88A89:U46U47_AA A 88 ? A 47 ? A 89 ? A 46 ? 1 A A 89 1_555 A U 46 1_555 A C 90 1_555 A G 45 1_555 0.191 -1.953 3.039 1.410 0.556 26.614 -4.370 -0.072 3.004 1.205 -3.061 26.657 18 AA_A89C90:G45U46_AA A 89 ? A 46 ? A 90 ? A 45 ? 1 A C 90 1_555 A G 45 1_555 A C 91 1_555 A G 44 1_555 0.981 -2.291 3.415 2.951 -1.065 27.754 -4.476 -1.278 3.581 -2.211 -6.128 27.927 19 AA_C90C91:G44G45_AA A 90 ? A 45 ? A 91 ? A 44 ? 1 A C 91 1_555 A G 44 1_555 A C 92 1_555 A G 43 1_555 -0.662 -2.209 3.569 -2.798 2.431 29.778 -4.803 0.661 3.428 4.707 5.418 30.003 20 AA_C91C92:G43G44_AA A 91 ? A 44 ? A 92 ? A 43 ? 1 A C 92 1_555 A G 43 1_555 A C 95 1_555 A G 42 1_555 -2.898 -1.399 3.327 -3.180 3.583 49.115 -1.951 3.229 3.393 4.298 3.816 49.333 21 AA_C92C95:G42G43_AA A 92 ? A 43 ? A 95 ? A 42 ? 1 A C 95 1_555 A G 42 1_555 A A 94 1_555 A U 40 1_555 0.138 -3.817 3.185 5.010 -0.211 -11.034 18.341 6.746 2.778 1.029 24.466 -12.117 22 AA_C95A94:U40G42_AA A 95 ? A 42 ? A 94 ? A 40 ? 1 A C 62 1_555 A G 56 1_555 A U 63 1_555 A A 55 1_555 0.531 -2.353 3.106 6.684 14.351 24.351 -7.186 0.096 1.591 30.271 -14.099 28.980 23 AA_C62U63:A55G56_AA A 62 ? A 56 ? A 63 ? A 55 ? 1 A U 63 1_555 A A 55 1_555 A G 64 1_555 A C 54 1_555 -0.040 -1.098 3.408 -5.188 15.756 32.267 -3.929 -0.647 2.590 26.293 8.658 36.180 24 AA_U63G64:C54A55_AA A 63 ? A 55 ? A 64 ? A 54 ? 1 A G 64 1_555 A C 54 1_555 A C 65 1_555 A G 53 1_555 -0.902 -1.431 3.116 4.613 7.347 34.385 -3.314 2.086 2.625 12.189 -7.654 35.431 25 AA_G64C65:G53C54_AA A 64 ? A 54 ? A 65 ? A 53 ? 1 A C 65 1_555 A G 53 1_555 A A 66 1_555 A U 52 1_555 0.428 -1.233 3.938 -9.529 22.717 35.578 -4.146 -1.617 2.558 32.786 13.752 43.046 26 AA_C65A66:U52G53_AA A 65 ? A 53 ? A 66 ? A 52 ? 1 A A 66 1_555 A U 52 1_555 A G 67 1_555 A C 51 1_555 0.506 -2.507 3.392 3.401 2.192 18.773 -8.634 0.217 3.122 6.622 -10.273 19.200 27 AA_A66G67:C51U52_AA A 66 ? A 52 ? A 67 ? A 51 ? 1 A G 67 1_555 A C 51 1_555 A U 68 1_555 A U 50 1_555 0.364 -0.828 3.128 -4.085 5.006 40.303 -1.704 -0.944 2.959 7.209 5.883 40.796 28 AA_G67U68:U50C51_AA A 67 ? A 51 ? A 68 ? A 50 ? 1 A U 68 1_555 A U 50 1_555 A A 69 1_555 A G 87 1_555 0.394 0.050 3.497 -9.443 -1.971 26.205 0.596 -3.183 3.154 -4.171 19.985 27.895 29 AA_U68A69:G87U50_AA A 68 ? A 50 ? A 69 ? A 87 ? 1 A A 69 1_555 A G 87 1_555 A G 70 1_555 A C 86 1_555 1.051 -0.963 3.336 0.274 4.946 58.393 -1.244 -1.060 3.257 5.059 -0.280 58.585 30 AA_A69G70:C86G87_AA A 69 ? A 87 ? A 70 ? A 86 ? 1 A G 70 1_555 A C 86 1_555 A G 71 1_555 A C 85 1_555 0.672 -2.126 3.498 1.893 6.475 29.958 -5.300 -0.895 3.019 12.330 -3.604 30.692 31 AA_G70G71:C85C86_AA A 70 ? A 86 ? A 71 ? A 85 ? 1 A G 71 1_555 A C 85 1_555 A G 72 1_555 A C 84 1_555 -1.331 -2.341 3.052 -5.525 2.096 26.204 -5.553 1.517 3.069 4.550 11.994 26.850 32 AA_G71G72:C84C85_AA A 71 ? A 85 ? A 72 ? A 84 ? 1 A G 72 1_555 A C 84 1_555 A A 73 1_555 A U 83 1_555 -0.159 -1.738 3.225 -1.068 4.350 33.861 -3.616 0.110 2.988 7.428 1.823 34.147 33 AA_G72A73:U83C84_AA A 72 ? A 84 ? A 73 ? A 83 ? 1 A A 73 1_555 A U 83 1_555 A U 74 1_555 A G 82 1_555 0.051 -1.535 3.090 1.661 5.456 34.999 -3.250 0.139 2.826 8.998 -2.740 35.446 34 AA_A73U74:G82U83_AA A 73 ? A 83 ? A 74 ? A 82 ? 1 A U 74 1_555 A G 82 1_555 A G 118 1_555 A U 81 1_555 -3.039 -0.987 3.298 -11.429 13.155 35.015 -3.232 3.030 3.513 20.379 17.705 38.990 35 AA_U74G118:U81G82_AA A 74 ? A 82 ? A 118 ? A 81 ? 1 A G 118 1_555 A U 81 1_555 A G 119 1_555 A C 80 1_555 0.043 -1.230 3.508 -0.711 3.616 45.445 -1.923 -0.122 3.404 4.672 0.918 45.586 36 AA_G118G119:C80U81_AA A 118 ? A 81 ? A 119 ? A 80 ? 1 A G 119 1_555 A C 80 1_555 A A 120 1_555 A U 79 1_555 -0.124 -1.485 3.079 -1.887 7.964 28.054 -4.473 -0.117 2.572 16.002 3.792 29.200 37 AA_G119A120:U79C80_AA A 119 ? A 80 ? A 120 ? A 79 ? 1 A A 120 1_555 A U 79 1_555 A A 121 1_555 A U 78 1_555 -0.355 -1.305 3.186 -2.881 5.995 34.863 -2.974 0.184 2.947 9.894 4.755 35.473 38 AA_A120A121:U78U79_AA A 120 ? A 79 ? A 121 ? A 78 ? 1 A A 121 1_555 A U 78 1_555 A G 122 1_555 A C 77 1_555 0.260 -1.267 3.308 3.596 13.877 30.888 -4.252 0.095 2.537 24.469 -6.342 33.979 39 AA_A121G122:C77U78_AA A 121 ? A 78 ? A 122 ? A 77 ? 1 A G 122 1_555 A C 77 1_555 A G 123 1_555 A C 76 1_555 0.827 -2.037 3.445 2.091 8.526 30.558 -5.253 -1.136 2.837 15.773 -3.868 31.765 40 AA_G122G123:C76C77_AA A 122 ? A 77 ? A 123 ? A 76 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1616265 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 2BA 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 'SULFATE ION' SO4 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4QK8 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #