HEADER RNA 22-NOV-18 6N5N TITLE STRUCTURE OF HUMAN PIR-MIRNA-208A APICAL LOOP AND ONE-BASE-PAIR FUSED TITLE 2 TO THE YDAO RIBOSWITCH SCAFFOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (125-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: IN VITRO TRANSCRIPTION VECTOR PT7-FLUC(DELTAI); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 905932 KEYWDS MICRORNA, RNA PROCESSING, PROTEIN-RNA INTERACTION, RNA EXPDTA X-RAY DIFFRACTION AUTHOR G.M.SHOFFNER,Z.PENG,F.GUO REVDAT 2 11-OCT-23 6N5N 1 COMPND HETNAM REVDAT 1 27-NOV-19 6N5N 0 JRNL AUTH G.M.SHOFFNER,Z.PENG,F.GUO JRNL TITL THREE-DIMENSIONAL STRUCTURES OF PRI-MIRNA APICAL JUNCTIONS JRNL TITL 2 AND LOOPS REVEALED BY SCAFFOLD-DIRECTED CRYSTALLOGRAPHY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 75.1364 - 6.9374 1.00 1394 156 0.1443 0.1524 REMARK 3 2 6.9374 - 5.5070 1.00 1321 146 0.1440 0.1437 REMARK 3 3 5.5070 - 4.8110 1.00 1312 146 0.1426 0.1477 REMARK 3 4 4.8110 - 4.3712 1.00 1300 145 0.1444 0.1580 REMARK 3 5 4.3712 - 4.0579 1.00 1299 144 0.1583 0.2027 REMARK 3 6 4.0579 - 3.8187 1.00 1287 143 0.1716 0.1922 REMARK 3 7 3.8187 - 3.6274 1.00 1294 144 0.1771 0.1956 REMARK 3 8 3.6274 - 3.4695 1.00 1282 143 0.2180 0.2185 REMARK 3 9 3.4695 - 3.3359 1.00 1280 140 0.2136 0.2671 REMARK 3 10 3.3359 - 3.2208 1.00 1296 145 0.2314 0.3298 REMARK 3 11 3.2208 - 3.1201 1.00 1266 140 0.2585 0.3232 REMARK 3 12 3.1201 - 3.0309 1.00 1283 143 0.2906 0.3207 REMARK 3 13 3.0309 - 2.9511 0.99 1239 138 0.3955 0.4123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 122.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 11:24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -72.787 16.156 -16.380 REMARK 3 T TENSOR REMARK 3 T11: 0.9798 T22: 1.4255 REMARK 3 T33: 1.1336 T12: 0.1961 REMARK 3 T13: 0.1576 T23: -0.1270 REMARK 3 L TENSOR REMARK 3 L11: 0.0230 L22: 0.2097 REMARK 3 L33: 0.1377 L12: -0.0148 REMARK 3 L13: 0.0290 L23: 0.0185 REMARK 3 S TENSOR REMARK 3 S11: -0.5821 S12: -0.0945 S13: 0.1138 REMARK 3 S21: 0.5211 S22: 0.2451 S23: 0.8211 REMARK 3 S31: -0.4464 S32: -1.9998 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 25:37 OR RESID 98:108 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.795 11.159 -8.270 REMARK 3 T TENSOR REMARK 3 T11: 0.7365 T22: 0.6097 REMARK 3 T33: 0.6952 T12: -0.1326 REMARK 3 T13: 0.0456 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: -0.0770 L22: 2.4098 REMARK 3 L33: 0.8353 L12: -0.1120 REMARK 3 L13: -0.4037 L23: -0.7639 REMARK 3 S TENSOR REMARK 3 S11: 0.1399 S12: -0.1197 S13: 0.0592 REMARK 3 S21: 0.2361 S22: -0.2412 S23: -0.2476 REMARK 3 S31: -0.0514 S32: 0.0575 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 41:50 OR RESID 89:97 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.238 25.767 -14.570 REMARK 3 T TENSOR REMARK 3 T11: 0.7921 T22: 0.7772 REMARK 3 T33: 0.8261 T12: -0.1716 REMARK 3 T13: 0.0971 T23: -0.0529 REMARK 3 L TENSOR REMARK 3 L11: 0.5968 L22: 0.5276 REMARK 3 L33: 0.6524 L12: 0.5979 REMARK 3 L13: 0.0649 L23: 0.6447 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: 0.0350 S13: 0.0171 REMARK 3 S21: -0.0197 S22: 0.1240 S23: -0.4450 REMARK 3 S31: -0.2234 S32: 0.5964 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 51:75 OR RESID 83:88 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.691 29.446 -34.294 REMARK 3 T TENSOR REMARK 3 T11: 0.9988 T22: 0.8503 REMARK 3 T33: 0.7846 T12: -0.2554 REMARK 3 T13: 0.2714 T23: 0.0894 REMARK 3 L TENSOR REMARK 3 L11: 1.9350 L22: 0.8075 REMARK 3 L33: 1.8287 L12: -0.4709 REMARK 3 L13: -0.6944 L23: -1.3604 REMARK 3 S TENSOR REMARK 3 S11: 0.2330 S12: -0.2170 S13: 0.4097 REMARK 3 S21: -0.4580 S22: -0.2619 S23: -0.2714 REMARK 3 S31: -1.2135 S32: 0.5075 S33: -0.0162 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 77:82 OR RESID 119:125 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.582 -0.172 -45.955 REMARK 3 T TENSOR REMARK 3 T11: 0.9442 T22: 0.8603 REMARK 3 T33: 0.7010 T12: 0.2356 REMARK 3 T13: 0.1137 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.3006 L22: 0.8380 REMARK 3 L33: 0.2067 L12: -0.8241 REMARK 3 L13: 0.3448 L23: -0.7838 REMARK 3 S TENSOR REMARK 3 S11: 0.2205 S12: 0.7102 S13: 0.2284 REMARK 3 S21: -0.9623 S22: -0.2977 S23: 0.1987 REMARK 3 S31: 0.2671 S32: 0.1909 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18748 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 75.112 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4QK8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M (NH4)2SO4, 0.2 M LI2SO4, AND 0.1 REMARK 280 M HEPES PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.27000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.54000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.54000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GTP A 1 PG O1G O2G O3G REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 2 O3' - P - O5' ANGL. DEV. = -13.8 DEGREES REMARK 500 G A 2 O3' - P - OP2 ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 30 OP2 REMARK 620 2 G A 97 OP1 83.3 REMARK 620 3 C A 98 OP2 157.2 82.6 REMARK 620 4 U A 99 O4 79.0 80.6 81.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2BA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2BA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6N5K RELATED DB: PDB REMARK 900 RELATED ID: 6N5L RELATED DB: PDB DBREF 6N5N A 1 125 PDB 6N5N 6N5N 1 125 SEQRES 1 A 125 GTP G U U G C C G A A U C C SEQRES 2 A 125 G A U G C U C G G U A C G SEQRES 3 A 125 G A G G A A C C G C U U U SEQRES 4 A 125 U U G G G G U U A A U C U SEQRES 5 A 125 G C A G U G A A G C U G C SEQRES 6 A 125 A G U A G G G A U A C C U SEQRES 7 A 125 U C U G U C C C G C A C C SEQRES 8 A 125 C G A C A G C U A A C U C SEQRES 9 A 125 C G G A G G C A A U A A A SEQRES 10 A 125 G G A A G G A G HET GTP A 1 28 HET 2BA A 201 44 HET 2BA A 202 44 HET MG A 203 1 HET K A 204 1 HET MG A 205 1 HET SO4 A 206 5 HET MG A 207 1 HET SO4 A 208 5 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM 2BA (2R,3R,3AS,5R,7AR,9R,10R,10AS,12R,14AR)-2,9-BIS(6- HETNAM 2 2BA AMINO-9H-PURIN-9-YL)OCTAHYDRO-2H,7H-DIFURO[3,2-D:3', HETNAM 3 2BA 2'-J][1,3,7,9,2,8 ]TETRAOXADIPHOSPHACYCLODODECINE-3,5, HETNAM 4 2BA 10,12-TETROL 5,12-DIOXIDE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM SO4 SULFATE ION HETSYN 2BA BIS-(3',5')-CYCLIC-DIMERIC-ADENOSINE-MONOPHOSPHATE FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 2 2BA 2(C20 H24 N10 O12 P2) FORMUL 4 MG 3(MG 2+) FORMUL 5 K K 1+ FORMUL 7 SO4 2(O4 S 2-) LINK O3' GTP A 1 P G A 2 1555 1555 1.57 LINK OP2 G A 30 MG MG A 203 1555 1555 2.07 LINK OP1 G A 97 MG MG A 203 1555 1555 2.46 LINK OP2 G A 97 MG MG A 205 1555 1555 2.57 LINK OP2 C A 98 MG MG A 203 1555 1555 2.03 LINK O4 U A 99 MG MG A 203 1555 1555 2.37 SITE 1 AC1 15 G A 5 C A 6 C A 7 G A 8 SITE 2 AC1 15 A A 48 G A 71 G A 72 A A 73 SITE 3 AC1 15 U A 74 A A 75 C A 85 C A 86 SITE 4 AC1 15 G A 110 C A 111 A A 112 SITE 1 AC2 14 A A 9 G A 26 G A 27 A A 28 SITE 2 AC2 14 G A 29 G A 44 G A 45 U A 46 SITE 3 AC2 14 U A 47 C A 91 C A 92 A A 96 SITE 4 AC2 14 C A 105 G A 106 SITE 1 AC3 5 G A 30 A A 96 G A 97 C A 98 SITE 2 AC3 5 U A 99 SITE 1 AC4 1 G A 97 SITE 1 AC5 3 A A 32 C A 98 U A 99 SITE 1 AC6 7 GTP A 1 G A 2 U A 3 C A 6 SITE 2 AC6 7 C A 7 G A 8 U A 11 CRYST1 114.680 114.680 114.810 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008720 0.005034 0.000000 0.00000 SCALE2 0.000000 0.010069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008710 0.00000 HETATM 1 O3B GTP A 1 -57.142 1.417 -29.008 1.00142.83 O HETATM 2 PB GTP A 1 -57.043 2.992 -28.685 1.00139.41 P HETATM 3 O1B GTP A 1 -55.660 3.470 -29.058 1.00138.98 O HETATM 4 O2B GTP A 1 -57.356 3.275 -27.235 1.00144.35 O HETATM 5 O3A GTP A 1 -58.137 3.696 -29.636 1.00121.40 O HETATM 6 PA GTP A 1 -59.689 3.270 -29.575 1.00108.25 P HETATM 7 O1A GTP A 1 -60.443 3.903 -30.721 1.00112.12 O HETATM 8 O2A GTP A 1 -59.846 1.767 -29.602 1.00104.14 O HETATM 9 O5' GTP A 1 -60.236 3.826 -28.169 1.00105.02 O HETATM 10 C5' GTP A 1 -61.583 4.233 -28.103 1.00 98.27 C HETATM 11 C4' GTP A 1 -61.826 5.427 -27.187 1.00 82.96 C HETATM 12 O4' GTP A 1 -60.632 6.081 -26.811 1.00 78.70 O HETATM 13 C3' GTP A 1 -62.648 6.493 -27.883 1.00 75.12 C HETATM 14 O3' GTP A 1 -64.026 6.212 -27.856 1.00 59.08 O HETATM 15 C2' GTP A 1 -62.276 7.732 -27.100 1.00 77.60 C HETATM 16 O2' GTP A 1 -63.005 7.791 -25.897 1.00 73.26 O HETATM 17 C1' GTP A 1 -60.818 7.484 -26.769 1.00 73.16 C HETATM 18 N9 GTP A 1 -59.986 8.057 -27.841 1.00 79.32 N HETATM 19 C8 GTP A 1 -59.006 7.365 -28.502 1.00 81.10 C HETATM 20 N7 GTP A 1 -58.438 8.176 -29.419 1.00 80.24 N HETATM 21 C5 GTP A 1 -59.036 9.382 -29.350 1.00 70.67 C HETATM 22 C6 GTP A 1 -58.824 10.550 -30.060 1.00 63.41 C HETATM 23 O6 GTP A 1 -57.956 10.583 -30.930 1.00 79.03 O HETATM 24 N1 GTP A 1 -59.586 11.664 -29.790 1.00 65.06 N HETATM 25 C2 GTP A 1 -60.555 11.609 -28.810 1.00 74.80 C HETATM 26 N2 GTP A 1 -61.287 12.692 -28.555 1.00 69.43 N HETATM 27 N3 GTP A 1 -60.761 10.437 -28.103 1.00 81.21 N HETATM 28 C4 GTP A 1 -60.014 9.332 -28.365 1.00 77.70 C