data_6N5Q # _entry.id 6N5Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6N5Q pdb_00006n5q 10.2210/pdb6n5q/pdb WWPDB D_1000238227 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6N5K unspecified PDB . 6N5L unspecified PDB . 6N5N unspecified PDB . 6N5O unspecified PDB . 6N5P unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6N5Q _pdbx_database_status.recvd_initial_deposition_date 2018-11-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shoffner, G.M.' 1 0000-0001-5479-4203 'Peng, Z.' 2 0000-0001-7666-1276 'Guo, F.' 3 0000-0002-6245-1486 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Three-dimensional structures of pri-miRNA apical junctions and loops revealed by scaffold-directed crystallography' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shoffner, G.M.' 1 0000-0001-5479-4203 primary 'Peng, Z.' 2 0000-0001-7666-1276 primary 'Guo, F.' 3 0000-0002-6245-1486 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6N5Q _cell.details ? _cell.formula_units_Z ? _cell.length_a 114.850 _cell.length_a_esd ? _cell.length_b 114.850 _cell.length_b_esd ? _cell.length_c 114.650 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (128-MER)' 41541.609 1 ? ? ? ? 2 non-polymer syn ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 658.412 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GUUGCCGAAUCCACCUAGAAAUGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGA UACCUUCUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGUUGCCGAAUCCACCUAGAAAUGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACC UUCUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 U n 1 4 U n 1 5 G n 1 6 C n 1 7 C n 1 8 G n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 C n 1 14 A n 1 15 C n 1 16 C n 1 17 U n 1 18 A n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 G n 1 25 G n 1 26 U n 1 27 A n 1 28 C n 1 29 G n 1 30 G n 1 31 A n 1 32 G n 1 33 G n 1 34 A n 1 35 A n 1 36 C n 1 37 C n 1 38 G n 1 39 C n 1 40 U n 1 41 U n 1 42 U n 1 43 U n 1 44 U n 1 45 G n 1 46 G n 1 47 G n 1 48 G n 1 49 U n 1 50 U n 1 51 A n 1 52 A n 1 53 U n 1 54 C n 1 55 U n 1 56 G n 1 57 C n 1 58 A n 1 59 G n 1 60 U n 1 61 G n 1 62 A n 1 63 A n 1 64 G n 1 65 C n 1 66 U n 1 67 G n 1 68 C n 1 69 A n 1 70 G n 1 71 U n 1 72 A n 1 73 G n 1 74 G n 1 75 G n 1 76 A n 1 77 U n 1 78 A n 1 79 C n 1 80 C n 1 81 U n 1 82 U n 1 83 C n 1 84 U n 1 85 G n 1 86 U n 1 87 C n 1 88 C n 1 89 C n 1 90 G n 1 91 C n 1 92 A n 1 93 C n 1 94 C n 1 95 C n 1 96 G n 1 97 A n 1 98 C n 1 99 A n 1 100 G n 1 101 C n 1 102 U n 1 103 A n 1 104 A n 1 105 C n 1 106 U n 1 107 C n 1 108 C n 1 109 G n 1 110 G n 1 111 A n 1 112 G n 1 113 G n 1 114 C n 1 115 A n 1 116 A n 1 117 U n 1 118 A n 1 119 A n 1 120 A n 1 121 G n 1 122 G n 1 123 A n 1 124 A n 1 125 G n 1 126 G n 1 127 A n 1 128 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 128 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-Fluc(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905932 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6N5Q _struct_ref.pdbx_db_accession 6N5Q _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6N5Q _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 128 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6N5Q _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 128 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 128 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2BA non-polymer . ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 'C20 H24 N10 O12 P2' 658.412 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6N5Q _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.25 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 76.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details 'Room Temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.63 M (NH4)2SO4, 0.272 M Li2SO4, and 0.1 M HEPES pH 7.4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-12-20 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Water-cooled flat double Si(111) Khozu monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.116 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.116 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6N5Q _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.946 _reflns.d_resolution_low 75.131 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18836 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 25.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.067 _reflns.pdbx_Rpim_I_all 0.015 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.95 _reflns_shell.d_res_low 3.05 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1884 _reflns_shell.percent_possible_all 97.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 18.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.54 _reflns_shell.pdbx_Rpim_I_all 0.346 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.840 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 330.830 _refine.B_iso_mean 117.2108 _refine.B_iso_min 51.230 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6N5Q _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9460 _refine.ls_d_res_low 75.1310 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18836 _refine.ls_number_reflns_R_free 1882 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7000 _refine.ls_percent_reflns_R_free 9.9900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1674 _refine.ls_R_factor_R_free 0.1879 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1650 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4QK8 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.8500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.9460 _refine_hist.d_res_low 75.1310 _refine_hist.pdbx_number_atoms_ligand 98 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 2849 _refine_hist.pdbx_number_residues_total 128 _refine_hist.pdbx_B_iso_mean_ligand 78.72 _refine_hist.pdbx_B_iso_mean_solvent 66.83 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2747 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.9456 3.0253 1385 . 139 1246 97.0000 . . . 0.3841 0.0000 0.3648 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.0253 3.1143 1430 . 143 1287 100.0000 . . . 0.3139 0.0000 0.2801 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.1143 3.2148 1414 . 141 1273 100.0000 . . . 0.2954 0.0000 0.2445 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.2148 3.3297 1433 . 144 1289 100.0000 . . . 0.2417 0.0000 0.2262 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.3297 3.4630 1439 . 144 1295 100.0000 . . . 0.2070 0.0000 0.1938 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.4630 3.6206 1433 . 142 1291 100.0000 . . . 0.2178 0.0000 0.2087 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.6206 3.8115 1433 . 143 1290 100.0000 . . . 0.2042 0.0000 0.1768 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.8115 4.0503 1461 . 146 1315 100.0000 . . . 0.2150 0.0000 0.1724 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 4.0503 4.3630 1432 . 143 1289 100.0000 . . . 0.1994 0.0000 0.1651 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 4.3630 4.8020 1466 . 147 1319 100.0000 . . . 0.1904 0.0000 0.1453 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 4.8020 5.4967 1475 . 147 1328 100.0000 . . . 0.1536 0.0000 0.1427 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 5.4967 6.9245 1479 . 148 1331 100.0000 . . . 0.1841 0.0000 0.1463 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 6.9245 75.1552 1556 . 155 1401 99.0000 . . . 0.1446 0.0000 0.1379 . . . . . . 13 . . . # _struct.entry_id 6N5Q _struct.title 'Structure of Human pir-miRNA-378a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6N5Q _struct_keywords.text 'microRNA, RNA processing, Protein-RNA interaction, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 3 ? I N N 5 ? J N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.559 ? ? metalc1 metalc ? ? A C 7 OP1 ? ? ? 1_555 H MG . MG ? ? A C 7 A MG 207 1_555 ? ? ? ? ? ? ? 2.753 ? ? metalc2 metalc ? ? A A 31 OP1 ? ? ? 1_555 E MG . MG ? ? A A 31 A MG 204 1_555 ? ? ? ? ? ? ? 2.852 ? ? metalc3 metalc ? ? A G 33 OP2 ? ? ? 1_555 D MG . MG ? ? A G 33 A MG 203 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc4 metalc ? ? A U 49 OP1 ? ? ? 1_555 E MG . MG ? ? A U 49 A MG 204 1_555 ? ? ? ? ? ? ? 2.896 ? ? metalc5 metalc ? ? A G 100 OP1 ? ? ? 1_555 D MG . MG ? ? A G 100 A MG 203 1_555 ? ? ? ? ? ? ? 2.275 ? ? metalc6 metalc ? ? A G 100 OP2 ? ? ? 1_555 G MG . MG ? ? A G 100 A MG 206 1_555 ? ? ? ? ? ? ? 2.543 ? ? metalc7 metalc ? ? A C 101 OP2 ? ? ? 1_555 D MG . MG ? ? A C 101 A MG 203 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc8 metalc ? ? A U 102 O4 ? ? ? 1_555 D MG . MG ? ? A U 102 A MG 203 1_555 ? ? ? ? ? ? ? 2.368 ? ? hydrog1 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 115 N1 ? ? A U 4 A A 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 115 N6 ? ? A U 4 A A 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 114 N3 ? ? A G 5 A C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 114 O2 ? ? A G 5 A C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 114 N4 ? ? A G 5 A C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 113 N1 ? ? A C 6 A G 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 113 O6 ? ? A C 6 A G 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 113 N2 ? ? A C 6 A G 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 112 N1 ? ? A C 7 A G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 112 O6 ? ? A C 7 A G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 112 N2 ? ? A C 7 A G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 111 N7 ? ? A G 8 A A 111 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog13 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 111 N6 ? ? A G 8 A A 111 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? A A 9 N3 ? ? ? 1_555 A G 109 N2 ? ? A A 9 A G 109 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog15 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 26 O2 ? ? A U 11 A U 26 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog16 hydrog ? ? A U 11 O4 ? ? ? 1_555 A U 26 N3 ? ? A U 11 A U 26 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog17 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 12 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 12 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 12 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 13 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 13 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 13 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 23 N3 ? ? A A 14 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 23 O4 ? ? A A 14 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 15 O2 ? ? ? 1_555 A A 22 N6 ? ? A C 15 A A 22 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog26 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 21 N6 ? ? A C 16 A A 21 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog27 hydrog ? ? A A 27 N6 ? ? ? 1_555 A G 110 N3 ? ? A A 27 A G 110 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? A A 27 N7 ? ? ? 1_555 A G 110 N2 ? ? A A 27 A G 110 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 109 N1 ? ? A C 28 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 109 O6 ? ? A C 28 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 109 N2 ? ? A C 28 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 108 N3 ? ? A G 29 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 108 O2 ? ? A G 29 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 108 N4 ? ? A G 29 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 107 N3 ? ? A G 30 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 107 O2 ? ? A G 30 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 107 N4 ? ? A G 30 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 31 N1 ? ? ? 1_555 A U 106 N3 ? ? A A 31 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 31 N6 ? ? ? 1_555 A U 106 O4 ? ? A A 31 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 105 N3 ? ? A G 32 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 105 O2 ? ? A G 32 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 105 N4 ? ? A G 32 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 33 N2 ? ? ? 1_555 A A 104 N7 ? ? A G 33 A A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog44 hydrog ? ? A G 33 N3 ? ? ? 1_555 A A 104 N6 ? ? A G 33 A A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog45 hydrog ? ? A C 36 N4 ? ? ? 1_555 A C 101 O2 ? ? A C 36 A C 101 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog46 hydrog ? ? A C 37 N3 ? ? ? 1_555 A G 100 N1 ? ? A C 37 A G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 37 N4 ? ? ? 1_555 A G 100 O6 ? ? A C 37 A G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 37 O2 ? ? ? 1_555 A G 100 N2 ? ? A C 37 A G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 43 N3 ? ? ? 1_555 A A 97 N1 ? ? A U 43 A A 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A U 43 O4 ? ? ? 1_555 A A 97 N6 ? ? A U 43 A A 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 45 O6 ? ? ? 1_555 A G 96 N2 ? ? A G 45 A G 96 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog52 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 98 N3 ? ? A G 45 A C 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 98 O2 ? ? A G 45 A C 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 98 N4 ? ? A G 45 A C 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 46 N1 ? ? ? 1_555 A C 95 N3 ? ? A G 46 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 46 N2 ? ? ? 1_555 A C 95 O2 ? ? A G 46 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 46 O6 ? ? ? 1_555 A C 95 N4 ? ? A G 46 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 46 N2 ? ? ? 1_555 A A 99 N1 ? ? A G 46 A A 99 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog59 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 94 N3 ? ? A G 47 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 94 O2 ? ? A G 47 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 47 O6 ? ? ? 1_555 A C 94 N4 ? ? A G 47 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 48 N1 ? ? ? 1_555 A C 93 N3 ? ? A G 48 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 48 N2 ? ? ? 1_555 A C 93 O2 ? ? A G 48 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 48 O6 ? ? ? 1_555 A C 93 N4 ? ? A G 48 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 49 N3 ? ? ? 1_555 A A 92 N1 ? ? A U 49 A A 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 49 O4 ? ? ? 1_555 A A 92 N6 ? ? A U 49 A A 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 50 O2 ? ? ? 1_555 A C 91 N4 ? ? A U 50 A C 91 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog68 hydrog ? ? A A 51 N3 ? ? ? 1_555 A G 73 N2 ? ? A A 51 A G 73 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog69 hydrog ? ? A U 53 N3 ? ? ? 1_555 A U 71 O2 ? ? A U 53 A U 71 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog70 hydrog ? ? A U 53 O4 ? ? ? 1_555 A U 71 N3 ? ? A U 53 A U 71 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog71 hydrog ? ? A C 54 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 54 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 54 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 54 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 54 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 54 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 55 N3 ? ? ? 1_555 A A 69 N1 ? ? A U 55 A A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 55 O4 ? ? ? 1_555 A A 69 N6 ? ? A U 55 A A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 56 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 56 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 56 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 56 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 56 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 56 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 57 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 57 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A C 57 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 57 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 57 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 57 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A A 58 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 58 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A A 58 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 58 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 59 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 59 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A G 59 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 59 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 59 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 59 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A U 60 N3 ? ? ? 1_555 A G 64 O6 ? ? A U 60 A G 64 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog88 hydrog ? ? A A 72 N6 ? ? ? 1_555 A G 90 N3 ? ? A A 72 A G 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog89 hydrog ? ? A A 72 N7 ? ? ? 1_555 A G 90 N2 ? ? A A 72 A G 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog90 hydrog ? ? A G 73 N1 ? ? ? 1_555 A C 89 N3 ? ? A G 73 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 73 N2 ? ? ? 1_555 A C 89 O2 ? ? A G 73 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 73 O6 ? ? ? 1_555 A C 89 N4 ? ? A G 73 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 74 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 74 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 74 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 74 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 74 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 74 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 75 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 75 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A G 75 N2 ? ? ? 1_555 A C 87 O2 ? ? A G 75 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A G 75 O6 ? ? ? 1_555 A C 87 N4 ? ? A G 75 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A A 76 N1 ? ? ? 1_555 A U 86 N3 ? ? A A 76 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A A 76 N6 ? ? ? 1_555 A U 86 O4 ? ? A A 76 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A U 77 N3 ? ? ? 1_555 A G 85 O6 ? ? A U 77 A G 85 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog102 hydrog ? ? A U 77 O2 ? ? ? 1_555 A G 85 N1 ? ? A U 77 A G 85 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog103 hydrog ? ? A C 79 N3 ? ? ? 1_555 A G 126 N1 ? ? A C 79 A G 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A C 79 N4 ? ? ? 1_555 A G 126 O6 ? ? A C 79 A G 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A C 79 O2 ? ? ? 1_555 A G 126 N2 ? ? A C 79 A G 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A C 80 N3 ? ? ? 1_555 A G 125 N1 ? ? A C 80 A G 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A C 80 N4 ? ? ? 1_555 A G 125 O6 ? ? A C 80 A G 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A C 80 O2 ? ? ? 1_555 A G 125 N2 ? ? A C 80 A G 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A U 81 N3 ? ? ? 1_555 A A 124 N1 ? ? A U 81 A A 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A U 81 O4 ? ? ? 1_555 A A 124 N6 ? ? A U 81 A A 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A U 82 N3 ? ? ? 1_555 A A 123 N1 ? ? A U 82 A A 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A U 82 O4 ? ? ? 1_555 A A 123 N6 ? ? A U 82 A A 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A C 83 N3 ? ? ? 1_555 A G 122 N1 ? ? A C 83 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A C 83 N4 ? ? ? 1_555 A G 122 O6 ? ? A C 83 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A C 83 O2 ? ? ? 1_555 A G 122 N2 ? ? A C 83 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A U 84 N3 ? ? ? 1_555 A G 121 O6 ? ? A U 84 A G 121 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog117 hydrog ? ? A U 84 O2 ? ? ? 1_555 A G 121 N1 ? ? A U 84 A G 121 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog118 hydrog ? ? A G 85 N2 ? ? ? 1_555 A A 119 N3 ? ? A G 85 A A 119 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog119 hydrog ? ? A C 95 O2 ? ? ? 1_555 A A 99 N6 ? ? A C 95 A A 99 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog120 hydrog ? ? A G 96 N3 ? ? ? 1_555 A C 98 N4 ? ? A G 96 A C 98 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2BA 201 ? 15 'binding site for residue 2BA A 201' AC2 Software A 2BA 202 ? 14 'binding site for residue 2BA A 202' AC3 Software A MG 203 ? 5 'binding site for residue MG A 203' AC4 Software A MG 204 ? 2 'binding site for residue MG A 204' AC5 Software A K 205 ? 1 'binding site for residue K A 205' AC6 Software A MG 206 ? 1 'binding site for residue MG A 206' AC7 Software A MG 207 ? 2 'binding site for residue MG A 207' AC8 Software A SO4 208 ? 2 'binding site for residue SO4 A 208' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 15 C A 6 ? C A 6 . ? 1_555 ? 3 AC1 15 C A 7 ? C A 7 . ? 1_555 ? 4 AC1 15 G A 8 ? G A 8 . ? 1_555 ? 5 AC1 15 A A 51 ? A A 51 . ? 1_555 ? 6 AC1 15 G A 74 ? G A 74 . ? 1_555 ? 7 AC1 15 G A 75 ? G A 75 . ? 1_555 ? 8 AC1 15 A A 76 ? A A 76 . ? 1_555 ? 9 AC1 15 U A 77 ? U A 77 . ? 1_555 ? 10 AC1 15 A A 78 ? A A 78 . ? 1_555 ? 11 AC1 15 C A 88 ? C A 88 . ? 1_555 ? 12 AC1 15 C A 89 ? C A 89 . ? 1_555 ? 13 AC1 15 G A 113 ? G A 113 . ? 1_555 ? 14 AC1 15 C A 114 ? C A 114 . ? 1_555 ? 15 AC1 15 A A 115 ? A A 115 . ? 1_555 ? 16 AC2 14 A A 9 ? A A 9 . ? 1_555 ? 17 AC2 14 G A 29 ? G A 29 . ? 1_555 ? 18 AC2 14 G A 30 ? G A 30 . ? 1_555 ? 19 AC2 14 A A 31 ? A A 31 . ? 1_555 ? 20 AC2 14 G A 32 ? G A 32 . ? 1_555 ? 21 AC2 14 G A 47 ? G A 47 . ? 1_555 ? 22 AC2 14 G A 48 ? G A 48 . ? 1_555 ? 23 AC2 14 U A 49 ? U A 49 . ? 1_555 ? 24 AC2 14 U A 50 ? U A 50 . ? 1_555 ? 25 AC2 14 C A 94 ? C A 94 . ? 1_555 ? 26 AC2 14 C A 95 ? C A 95 . ? 1_555 ? 27 AC2 14 A A 99 ? A A 99 . ? 1_555 ? 28 AC2 14 C A 108 ? C A 108 . ? 1_555 ? 29 AC2 14 G A 109 ? G A 109 . ? 1_555 ? 30 AC3 5 G A 33 ? G A 33 . ? 1_555 ? 31 AC3 5 A A 99 ? A A 99 . ? 1_555 ? 32 AC3 5 G A 100 ? G A 100 . ? 1_555 ? 33 AC3 5 C A 101 ? C A 101 . ? 1_555 ? 34 AC3 5 U A 102 ? U A 102 . ? 1_555 ? 35 AC4 2 A A 31 ? A A 31 . ? 1_555 ? 36 AC4 2 U A 49 ? U A 49 . ? 1_555 ? 37 AC5 1 GTP A 1 ? GTP A 1 . ? 1_555 ? 38 AC6 1 G A 100 ? G A 100 . ? 1_555 ? 39 AC7 2 C A 7 ? C A 7 . ? 1_555 ? 40 AC7 2 A A 76 ? A A 76 . ? 1_555 ? 41 AC8 2 C A 101 ? C A 101 . ? 1_555 ? 42 AC8 2 U A 102 ? U A 102 . ? 1_555 ? # _atom_sites.entry_id 6N5Q _atom_sites.fract_transf_matrix[1][1] 0.008707 _atom_sites.fract_transf_matrix[1][2] 0.005027 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010054 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008722 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 U 17 17 17 U U A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 A 20 20 20 A A A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 U 23 23 23 U U A . n A 1 24 G 24 24 24 G G A . n A 1 25 G 25 25 25 G G A . n A 1 26 U 26 26 26 U U A . n A 1 27 A 27 27 27 A A A . n A 1 28 C 28 28 28 C C A . n A 1 29 G 29 29 29 G G A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 A 34 34 34 A A A . n A 1 35 A 35 35 35 A A A . n A 1 36 C 36 36 36 C C A . n A 1 37 C 37 37 37 C C A . n A 1 38 G 38 38 38 G G A . n A 1 39 C 39 39 39 C C A . n A 1 40 U 40 40 40 U U A . n A 1 41 U 41 41 41 U U A . n A 1 42 U 42 42 42 U U A . n A 1 43 U 43 43 43 U U A . n A 1 44 U 44 44 44 U U A . n A 1 45 G 45 45 45 G G A . n A 1 46 G 46 46 46 G G A . n A 1 47 G 47 47 47 G G A . n A 1 48 G 48 48 48 G G A . n A 1 49 U 49 49 49 U U A . n A 1 50 U 50 50 50 U U A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 U 53 53 53 U U A . n A 1 54 C 54 54 54 C C A . n A 1 55 U 55 55 55 U U A . n A 1 56 G 56 56 56 G G A . n A 1 57 C 57 57 57 C C A . n A 1 58 A 58 58 58 A A A . n A 1 59 G 59 59 59 G G A . n A 1 60 U 60 60 60 U U A . n A 1 61 G 61 61 61 G G A . n A 1 62 A 62 62 62 A A A . n A 1 63 A 63 63 63 A A A . n A 1 64 G 64 64 64 G G A . n A 1 65 C 65 65 65 C C A . n A 1 66 U 66 66 66 U U A . n A 1 67 G 67 67 67 G G A . n A 1 68 C 68 68 68 C C A . n A 1 69 A 69 69 69 A A A . n A 1 70 G 70 70 70 G G A . n A 1 71 U 71 71 71 U U A . n A 1 72 A 72 72 72 A A A . n A 1 73 G 73 73 73 G G A . n A 1 74 G 74 74 74 G G A . n A 1 75 G 75 75 75 G G A . n A 1 76 A 76 76 76 A A A . n A 1 77 U 77 77 77 U U A . n A 1 78 A 78 78 78 A A A . n A 1 79 C 79 79 79 C C A . n A 1 80 C 80 80 80 C C A . n A 1 81 U 81 81 81 U U A . n A 1 82 U 82 82 82 U U A . n A 1 83 C 83 83 83 C C A . n A 1 84 U 84 84 84 U U A . n A 1 85 G 85 85 85 G G A . n A 1 86 U 86 86 86 U U A . n A 1 87 C 87 87 87 C C A . n A 1 88 C 88 88 88 C C A . n A 1 89 C 89 89 89 C C A . n A 1 90 G 90 90 90 G G A . n A 1 91 C 91 91 91 C C A . n A 1 92 A 92 92 92 A A A . n A 1 93 C 93 93 93 C C A . n A 1 94 C 94 94 94 C C A . n A 1 95 C 95 95 95 C C A . n A 1 96 G 96 96 96 G G A . n A 1 97 A 97 97 97 A A A . n A 1 98 C 98 98 98 C C A . n A 1 99 A 99 99 99 A A A . n A 1 100 G 100 100 100 G G A . n A 1 101 C 101 101 101 C C A . n A 1 102 U 102 102 102 U U A . n A 1 103 A 103 103 103 A A A . n A 1 104 A 104 104 104 A A A . n A 1 105 C 105 105 105 C C A . n A 1 106 U 106 106 106 U U A . n A 1 107 C 107 107 107 C C A . n A 1 108 C 108 108 108 C C A . n A 1 109 G 109 109 109 G G A . n A 1 110 G 110 110 110 G G A . n A 1 111 A 111 111 111 A A A . n A 1 112 G 112 112 112 G G A . n A 1 113 G 113 113 113 G G A . n A 1 114 C 114 114 114 C C A . n A 1 115 A 115 115 115 A A A . n A 1 116 A 116 116 116 A A A . n A 1 117 U 117 117 117 U U A . n A 1 118 A 118 118 118 A A A . n A 1 119 A 119 119 119 A A A . n A 1 120 A 120 120 120 A A A . n A 1 121 G 121 121 121 G G A . n A 1 122 G 122 122 122 G G A . n A 1 123 A 123 123 123 A A A . n A 1 124 A 124 124 124 A A A . n A 1 125 G 125 125 125 G G A . n A 1 126 G 126 126 126 G G A . n A 1 127 A 127 127 127 A A A . n A 1 128 G 128 128 128 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2BA 1 201 201 2BA 2BA A . C 2 2BA 1 202 202 2BA 2BA A . D 3 MG 1 203 203 MG MG A . E 3 MG 1 204 204 MG MG A . F 4 K 1 205 205 K K A . G 3 MG 1 206 206 MG MG A . H 3 MG 1 207 207 MG MG A . I 5 SO4 1 208 208 SO4 SO4 A . J 6 HOH 1 401 401 HOH HOH A . J 6 HOH 2 402 403 HOH HOH A . J 6 HOH 3 403 402 HOH HOH A . J 6 HOH 4 404 404 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 31 ? A A 31 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 OP1 ? A U 49 ? A U 49 ? 1_555 61.3 ? 2 OP2 ? A G 33 ? A G 33 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP1 ? A G 100 ? A G 100 ? 1_555 85.3 ? 3 OP2 ? A G 33 ? A G 33 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 101 ? A C 101 ? 1_555 157.7 ? 4 OP1 ? A G 100 ? A G 100 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 101 ? A C 101 ? 1_555 79.1 ? 5 OP2 ? A G 33 ? A G 33 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 102 ? A U 102 ? 1_555 80.5 ? 6 OP1 ? A G 100 ? A G 100 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 102 ? A U 102 ? 1_555 78.0 ? 7 OP2 ? A C 101 ? A C 101 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 102 ? A U 102 ? 1_555 80.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-11-27 2 'Structure model' 1 1 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' chem_comp_atom 3 2 'Structure model' chem_comp_bond 4 2 'Structure model' database_2 5 2 'Structure model' entity 6 2 'Structure model' pdbx_entity_nonpoly 7 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.name' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_entity.pdbx_description' 5 2 'Structure model' '_pdbx_entity_nonpoly.name' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A GTP 1 ? ? "O3'" A GTP 1 ? ? P A G 2 ? ? 107.99 119.70 -11.71 1.20 Y 2 1 "O3'" A GTP 1 ? ? P A G 2 ? ? OP2 A G 2 ? ? 123.59 110.50 13.09 1.10 Y # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GTP 1 ? PG ? A GTP 1 PG 2 1 Y 1 A GTP 1 ? O1G ? A GTP 1 O1G 3 1 Y 1 A GTP 1 ? O2G ? A GTP 1 O2G 4 1 Y 1 A GTP 1 ? O3G ? A GTP 1 O3G # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2BA P P N R 1 2BA O1P O N N 2 2BA O2P O N N 3 2BA "O5'" O N N 4 2BA "C5'" C N N 5 2BA "C4'" C N R 6 2BA "O4'" O N N 7 2BA "C3'" C N S 8 2BA "O3'" O N N 9 2BA "C2'" C N R 10 2BA "O2'" O N N 11 2BA "C1'" C N R 12 2BA N9 N Y N 13 2BA C8 C Y N 14 2BA N7 N Y N 15 2BA C5 C Y N 16 2BA C6 C Y N 17 2BA N6 N N N 18 2BA N1 N Y N 19 2BA C2 C Y N 20 2BA N3 N Y N 21 2BA C4 C Y N 22 2BA P1 P N R 23 2BA O1P1 O N N 24 2BA O2P1 O N N 25 2BA "O5'1" O N N 26 2BA "C5'1" C N N 27 2BA "C4'1" C N R 28 2BA "O4'1" O N N 29 2BA "C3'1" C N S 30 2BA "O3'1" O N N 31 2BA "C2'1" C N R 32 2BA "O2'1" O N N 33 2BA "C1'1" C N R 34 2BA N91 N Y N 35 2BA C81 C Y N 36 2BA N71 N Y N 37 2BA C51 C Y N 38 2BA C61 C Y N 39 2BA N61 N N N 40 2BA N11 N Y N 41 2BA C21 C Y N 42 2BA N31 N Y N 43 2BA C41 C Y N 44 2BA "H5'" H N N 45 2BA "H5'A" H N N 46 2BA "H4'" H N N 47 2BA "H3'" H N N 48 2BA "H2'" H N N 49 2BA "HO2'" H N N 50 2BA "H1'" H N N 51 2BA H8 H N N 52 2BA HN6 H N N 53 2BA HN6A H N N 54 2BA H2 H N N 55 2BA "HC5'" H N N 56 2BA HC5A H N N 57 2BA "HC4'" H N N 58 2BA "HC3'" H N N 59 2BA "HC2'" H N N 60 2BA HO2A H N N 61 2BA "HC1'" H N N 62 2BA HC8 H N N 63 2BA H1N6 H N N 64 2BA H1NA H N N 65 2BA HC2 H N N 66 2BA H2P H N N 67 2BA H2OP H N N 68 A OP3 O N N 69 A P P N N 70 A OP1 O N N 71 A OP2 O N N 72 A "O5'" O N N 73 A "C5'" C N N 74 A "C4'" C N R 75 A "O4'" O N N 76 A "C3'" C N S 77 A "O3'" O N N 78 A "C2'" C N R 79 A "O2'" O N N 80 A "C1'" C N R 81 A N9 N Y N 82 A C8 C Y N 83 A N7 N Y N 84 A C5 C Y N 85 A C6 C Y N 86 A N6 N N N 87 A N1 N Y N 88 A C2 C Y N 89 A N3 N Y N 90 A C4 C Y N 91 A HOP3 H N N 92 A HOP2 H N N 93 A "H5'" H N N 94 A "H5''" H N N 95 A "H4'" H N N 96 A "H3'" H N N 97 A "HO3'" H N N 98 A "H2'" H N N 99 A "HO2'" H N N 100 A "H1'" H N N 101 A H8 H N N 102 A H61 H N N 103 A H62 H N N 104 A H2 H N N 105 C OP3 O N N 106 C P P N N 107 C OP1 O N N 108 C OP2 O N N 109 C "O5'" O N N 110 C "C5'" C N N 111 C "C4'" C N R 112 C "O4'" O N N 113 C "C3'" C N S 114 C "O3'" O N N 115 C "C2'" C N R 116 C "O2'" O N N 117 C "C1'" C N R 118 C N1 N N N 119 C C2 C N N 120 C O2 O N N 121 C N3 N N N 122 C C4 C N N 123 C N4 N N N 124 C C5 C N N 125 C C6 C N N 126 C HOP3 H N N 127 C HOP2 H N N 128 C "H5'" H N N 129 C "H5''" H N N 130 C "H4'" H N N 131 C "H3'" H N N 132 C "HO3'" H N N 133 C "H2'" H N N 134 C "HO2'" H N N 135 C "H1'" H N N 136 C H41 H N N 137 C H42 H N N 138 C H5 H N N 139 C H6 H N N 140 G OP3 O N N 141 G P P N N 142 G OP1 O N N 143 G OP2 O N N 144 G "O5'" O N N 145 G "C5'" C N N 146 G "C4'" C N R 147 G "O4'" O N N 148 G "C3'" C N S 149 G "O3'" O N N 150 G "C2'" C N R 151 G "O2'" O N N 152 G "C1'" C N R 153 G N9 N Y N 154 G C8 C Y N 155 G N7 N Y N 156 G C5 C Y N 157 G C6 C N N 158 G O6 O N N 159 G N1 N N N 160 G C2 C N N 161 G N2 N N N 162 G N3 N N N 163 G C4 C Y N 164 G HOP3 H N N 165 G HOP2 H N N 166 G "H5'" H N N 167 G "H5''" H N N 168 G "H4'" H N N 169 G "H3'" H N N 170 G "HO3'" H N N 171 G "H2'" H N N 172 G "HO2'" H N N 173 G "H1'" H N N 174 G H8 H N N 175 G H1 H N N 176 G H21 H N N 177 G H22 H N N 178 GTP PG P N N 179 GTP O1G O N N 180 GTP O2G O N N 181 GTP O3G O N N 182 GTP O3B O N N 183 GTP PB P N N 184 GTP O1B O N N 185 GTP O2B O N N 186 GTP O3A O N N 187 GTP PA P N N 188 GTP O1A O N N 189 GTP O2A O N N 190 GTP "O5'" O N N 191 GTP "C5'" C N N 192 GTP "C4'" C N R 193 GTP "O4'" O N N 194 GTP "C3'" C N S 195 GTP "O3'" O N N 196 GTP "C2'" C N R 197 GTP "O2'" O N N 198 GTP "C1'" C N R 199 GTP N9 N Y N 200 GTP C8 C Y N 201 GTP N7 N Y N 202 GTP C5 C Y N 203 GTP C6 C N N 204 GTP O6 O N N 205 GTP N1 N N N 206 GTP C2 C N N 207 GTP N2 N N N 208 GTP N3 N N N 209 GTP C4 C Y N 210 GTP HOG2 H N N 211 GTP HOG3 H N N 212 GTP HOB2 H N N 213 GTP HOA2 H N N 214 GTP "H5'" H N N 215 GTP "H5''" H N N 216 GTP "H4'" H N N 217 GTP "H3'" H N N 218 GTP "HO3'" H N N 219 GTP "H2'" H N N 220 GTP "HO2'" H N N 221 GTP "H1'" H N N 222 GTP H8 H N N 223 GTP HN1 H N N 224 GTP HN21 H N N 225 GTP HN22 H N N 226 HOH O O N N 227 HOH H1 H N N 228 HOH H2 H N N 229 K K K N N 230 MG MG MG N N 231 SO4 S S N N 232 SO4 O1 O N N 233 SO4 O2 O N N 234 SO4 O3 O N N 235 SO4 O4 O N N 236 U OP3 O N N 237 U P P N N 238 U OP1 O N N 239 U OP2 O N N 240 U "O5'" O N N 241 U "C5'" C N N 242 U "C4'" C N R 243 U "O4'" O N N 244 U "C3'" C N S 245 U "O3'" O N N 246 U "C2'" C N R 247 U "O2'" O N N 248 U "C1'" C N R 249 U N1 N N N 250 U C2 C N N 251 U O2 O N N 252 U N3 N N N 253 U C4 C N N 254 U O4 O N N 255 U C5 C N N 256 U C6 C N N 257 U HOP3 H N N 258 U HOP2 H N N 259 U "H5'" H N N 260 U "H5''" H N N 261 U "H4'" H N N 262 U "H3'" H N N 263 U "HO3'" H N N 264 U "H2'" H N N 265 U "HO2'" H N N 266 U "H1'" H N N 267 U H3 H N N 268 U H5 H N N 269 U H6 H N N 270 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2BA P O1P doub N N 1 2BA P O2P sing N N 2 2BA P "O5'" sing N N 3 2BA P "O3'1" sing N N 4 2BA "O5'" "C5'" sing N N 5 2BA "C5'" "C4'" sing N N 6 2BA "C4'" "O4'" sing N N 7 2BA "C4'" "C3'" sing N N 8 2BA "O4'" "C1'" sing N N 9 2BA "C3'" "O3'" sing N N 10 2BA "C3'" "C2'" sing N N 11 2BA "O3'" P1 sing N N 12 2BA "C2'" "O2'" sing N N 13 2BA "C2'" "C1'" sing N N 14 2BA "C1'" N9 sing N N 15 2BA N9 C8 sing Y N 16 2BA N9 C4 sing Y N 17 2BA C8 N7 doub Y N 18 2BA N7 C5 sing Y N 19 2BA C5 C6 doub Y N 20 2BA C5 C4 sing Y N 21 2BA C6 N6 sing N N 22 2BA C6 N1 sing Y N 23 2BA N1 C2 doub Y N 24 2BA C2 N3 sing Y N 25 2BA N3 C4 doub Y N 26 2BA P1 O1P1 doub N N 27 2BA P1 O2P1 sing N N 28 2BA P1 "O5'1" sing N N 29 2BA "O5'1" "C5'1" sing N N 30 2BA "C5'1" "C4'1" sing N N 31 2BA "C4'1" "O4'1" sing N N 32 2BA "C4'1" "C3'1" sing N N 33 2BA "O4'1" "C1'1" sing N N 34 2BA "C3'1" "O3'1" sing N N 35 2BA "C3'1" "C2'1" sing N N 36 2BA "C2'1" "O2'1" sing N N 37 2BA "C2'1" "C1'1" sing N N 38 2BA "C1'1" N91 sing N N 39 2BA N91 C81 sing Y N 40 2BA N91 C41 sing Y N 41 2BA C81 N71 doub Y N 42 2BA N71 C51 sing Y N 43 2BA C51 C61 doub Y N 44 2BA C51 C41 sing Y N 45 2BA C61 N61 sing N N 46 2BA C61 N11 sing Y N 47 2BA N11 C21 doub Y N 48 2BA C21 N31 sing Y N 49 2BA N31 C41 doub Y N 50 2BA "C5'" "H5'" sing N N 51 2BA "C5'" "H5'A" sing N N 52 2BA "C4'" "H4'" sing N N 53 2BA "C3'" "H3'" sing N N 54 2BA "C2'" "H2'" sing N N 55 2BA "O2'" "HO2'" sing N N 56 2BA "C1'" "H1'" sing N N 57 2BA C8 H8 sing N N 58 2BA N6 HN6 sing N N 59 2BA N6 HN6A sing N N 60 2BA C2 H2 sing N N 61 2BA "C5'1" "HC5'" sing N N 62 2BA "C5'1" HC5A sing N N 63 2BA "C4'1" "HC4'" sing N N 64 2BA "C3'1" "HC3'" sing N N 65 2BA "C2'1" "HC2'" sing N N 66 2BA "O2'1" HO2A sing N N 67 2BA "C1'1" "HC1'" sing N N 68 2BA C81 HC8 sing N N 69 2BA N61 H1N6 sing N N 70 2BA N61 H1NA sing N N 71 2BA C21 HC2 sing N N 72 2BA O2P H2P sing N N 73 2BA O2P1 H2OP sing N N 74 A OP3 P sing N N 75 A OP3 HOP3 sing N N 76 A P OP1 doub N N 77 A P OP2 sing N N 78 A P "O5'" sing N N 79 A OP2 HOP2 sing N N 80 A "O5'" "C5'" sing N N 81 A "C5'" "C4'" sing N N 82 A "C5'" "H5'" sing N N 83 A "C5'" "H5''" sing N N 84 A "C4'" "O4'" sing N N 85 A "C4'" "C3'" sing N N 86 A "C4'" "H4'" sing N N 87 A "O4'" "C1'" sing N N 88 A "C3'" "O3'" sing N N 89 A "C3'" "C2'" sing N N 90 A "C3'" "H3'" sing N N 91 A "O3'" "HO3'" sing N N 92 A "C2'" "O2'" sing N N 93 A "C2'" "C1'" sing N N 94 A "C2'" "H2'" sing N N 95 A "O2'" "HO2'" sing N N 96 A "C1'" N9 sing N N 97 A "C1'" "H1'" sing N N 98 A N9 C8 sing Y N 99 A N9 C4 sing Y N 100 A C8 N7 doub Y N 101 A C8 H8 sing N N 102 A N7 C5 sing Y N 103 A C5 C6 sing Y N 104 A C5 C4 doub Y N 105 A C6 N6 sing N N 106 A C6 N1 doub Y N 107 A N6 H61 sing N N 108 A N6 H62 sing N N 109 A N1 C2 sing Y N 110 A C2 N3 doub Y N 111 A C2 H2 sing N N 112 A N3 C4 sing Y N 113 C OP3 P sing N N 114 C OP3 HOP3 sing N N 115 C P OP1 doub N N 116 C P OP2 sing N N 117 C P "O5'" sing N N 118 C OP2 HOP2 sing N N 119 C "O5'" "C5'" sing N N 120 C "C5'" "C4'" sing N N 121 C "C5'" "H5'" sing N N 122 C "C5'" "H5''" sing N N 123 C "C4'" "O4'" sing N N 124 C "C4'" "C3'" sing N N 125 C "C4'" "H4'" sing N N 126 C "O4'" "C1'" sing N N 127 C "C3'" "O3'" sing N N 128 C "C3'" "C2'" sing N N 129 C "C3'" "H3'" sing N N 130 C "O3'" "HO3'" sing N N 131 C "C2'" "O2'" sing N N 132 C "C2'" "C1'" sing N N 133 C "C2'" "H2'" sing N N 134 C "O2'" "HO2'" sing N N 135 C "C1'" N1 sing N N 136 C "C1'" "H1'" sing N N 137 C N1 C2 sing N N 138 C N1 C6 sing N N 139 C C2 O2 doub N N 140 C C2 N3 sing N N 141 C N3 C4 doub N N 142 C C4 N4 sing N N 143 C C4 C5 sing N N 144 C N4 H41 sing N N 145 C N4 H42 sing N N 146 C C5 C6 doub N N 147 C C5 H5 sing N N 148 C C6 H6 sing N N 149 G OP3 P sing N N 150 G OP3 HOP3 sing N N 151 G P OP1 doub N N 152 G P OP2 sing N N 153 G P "O5'" sing N N 154 G OP2 HOP2 sing N N 155 G "O5'" "C5'" sing N N 156 G "C5'" "C4'" sing N N 157 G "C5'" "H5'" sing N N 158 G "C5'" "H5''" sing N N 159 G "C4'" "O4'" sing N N 160 G "C4'" "C3'" sing N N 161 G "C4'" "H4'" sing N N 162 G "O4'" "C1'" sing N N 163 G "C3'" "O3'" sing N N 164 G "C3'" "C2'" sing N N 165 G "C3'" "H3'" sing N N 166 G "O3'" "HO3'" sing N N 167 G "C2'" "O2'" sing N N 168 G "C2'" "C1'" sing N N 169 G "C2'" "H2'" sing N N 170 G "O2'" "HO2'" sing N N 171 G "C1'" N9 sing N N 172 G "C1'" "H1'" sing N N 173 G N9 C8 sing Y N 174 G N9 C4 sing Y N 175 G C8 N7 doub Y N 176 G C8 H8 sing N N 177 G N7 C5 sing Y N 178 G C5 C6 sing N N 179 G C5 C4 doub Y N 180 G C6 O6 doub N N 181 G C6 N1 sing N N 182 G N1 C2 sing N N 183 G N1 H1 sing N N 184 G C2 N2 sing N N 185 G C2 N3 doub N N 186 G N2 H21 sing N N 187 G N2 H22 sing N N 188 G N3 C4 sing N N 189 GTP PG O1G doub N N 190 GTP PG O2G sing N N 191 GTP PG O3G sing N N 192 GTP PG O3B sing N N 193 GTP O2G HOG2 sing N N 194 GTP O3G HOG3 sing N N 195 GTP O3B PB sing N N 196 GTP PB O1B doub N N 197 GTP PB O2B sing N N 198 GTP PB O3A sing N N 199 GTP O2B HOB2 sing N N 200 GTP O3A PA sing N N 201 GTP PA O1A doub N N 202 GTP PA O2A sing N N 203 GTP PA "O5'" sing N N 204 GTP O2A HOA2 sing N N 205 GTP "O5'" "C5'" sing N N 206 GTP "C5'" "C4'" sing N N 207 GTP "C5'" "H5'" sing N N 208 GTP "C5'" "H5''" sing N N 209 GTP "C4'" "O4'" sing N N 210 GTP "C4'" "C3'" sing N N 211 GTP "C4'" "H4'" sing N N 212 GTP "O4'" "C1'" sing N N 213 GTP "C3'" "O3'" sing N N 214 GTP "C3'" "C2'" sing N N 215 GTP "C3'" "H3'" sing N N 216 GTP "O3'" "HO3'" sing N N 217 GTP "C2'" "O2'" sing N N 218 GTP "C2'" "C1'" sing N N 219 GTP "C2'" "H2'" sing N N 220 GTP "O2'" "HO2'" sing N N 221 GTP "C1'" N9 sing N N 222 GTP "C1'" "H1'" sing N N 223 GTP N9 C8 sing Y N 224 GTP N9 C4 sing Y N 225 GTP C8 N7 doub Y N 226 GTP C8 H8 sing N N 227 GTP N7 C5 sing Y N 228 GTP C5 C6 sing N N 229 GTP C5 C4 doub Y N 230 GTP C6 O6 doub N N 231 GTP C6 N1 sing N N 232 GTP N1 C2 sing N N 233 GTP N1 HN1 sing N N 234 GTP C2 N2 sing N N 235 GTP C2 N3 doub N N 236 GTP N2 HN21 sing N N 237 GTP N2 HN22 sing N N 238 GTP N3 C4 sing N N 239 HOH O H1 sing N N 240 HOH O H2 sing N N 241 SO4 S O1 doub N N 242 SO4 S O2 doub N N 243 SO4 S O3 sing N N 244 SO4 S O4 sing N N 245 U OP3 P sing N N 246 U OP3 HOP3 sing N N 247 U P OP1 doub N N 248 U P OP2 sing N N 249 U P "O5'" sing N N 250 U OP2 HOP2 sing N N 251 U "O5'" "C5'" sing N N 252 U "C5'" "C4'" sing N N 253 U "C5'" "H5'" sing N N 254 U "C5'" "H5''" sing N N 255 U "C4'" "O4'" sing N N 256 U "C4'" "C3'" sing N N 257 U "C4'" "H4'" sing N N 258 U "O4'" "C1'" sing N N 259 U "C3'" "O3'" sing N N 260 U "C3'" "C2'" sing N N 261 U "C3'" "H3'" sing N N 262 U "O3'" "HO3'" sing N N 263 U "C2'" "O2'" sing N N 264 U "C2'" "C1'" sing N N 265 U "C2'" "H2'" sing N N 266 U "O2'" "HO2'" sing N N 267 U "C1'" N1 sing N N 268 U "C1'" "H1'" sing N N 269 U N1 C2 sing N N 270 U N1 C6 sing N N 271 U C2 O2 doub N N 272 U C2 N3 sing N N 273 U N3 C4 sing N N 274 U N3 H3 sing N N 275 U C4 O4 doub N N 276 U C4 C5 sing N N 277 U C5 C6 doub N N 278 U C5 H5 sing N N 279 U C6 H6 sing N N 280 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6N5Q 'double helix' 6N5Q 'a-form double helix' 6N5Q 'hairpin loop' 6N5Q 'mismatched base pair' 6N5Q 'internal loop' 6N5Q 'quadruple helix' 6N5Q 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 4 1_555 A A 115 1_555 -0.706 -0.087 0.107 7.581 -10.144 0.255 1 A_U4:A115_A A 4 ? A 115 ? 20 1 1 A G 5 1_555 A C 114 1_555 -0.107 -0.073 -0.161 -5.258 -11.423 4.546 2 A_G5:C114_A A 5 ? A 114 ? 19 1 1 A C 6 1_555 A G 113 1_555 0.740 -0.159 -0.247 4.678 -4.892 3.959 3 A_C6:G113_A A 6 ? A 113 ? 19 1 1 A C 7 1_555 A G 112 1_555 0.548 -0.245 -0.202 14.458 7.857 -1.470 4 A_C7:G112_A A 7 ? A 112 ? 19 1 1 A G 8 1_555 A A 111 1_555 6.664 -3.976 0.131 32.381 6.711 -3.716 5 A_G8:A111_A A 8 ? A 111 ? 11 10 1 A A 21 1_555 A C 16 1_555 -7.049 -4.358 0.544 12.864 -0.615 -16.282 6 A_A21:C16_A A 21 ? A 16 ? ? 6 1 A A 22 1_555 A C 15 1_555 -3.936 -0.466 0.232 12.424 -6.842 -9.356 7 A_A22:C15_A A 22 ? A 15 ? ? 1 1 A U 23 1_555 A A 14 1_555 -0.259 -0.007 -0.013 9.675 -12.860 1.541 8 A_U23:A14_A A 23 ? A 14 ? 20 1 1 A G 24 1_555 A C 13 1_555 -0.613 -0.468 -0.098 1.779 -7.226 0.371 9 A_G24:C13_A A 24 ? A 13 ? 19 1 1 A G 25 1_555 A C 12 1_555 0.158 -0.188 -0.473 -0.771 -6.473 -1.097 10 A_G25:C12_A A 25 ? A 12 ? 19 1 1 A U 26 1_555 A U 11 1_555 2.443 -1.963 -0.231 -2.644 -4.041 17.522 11 A_U26:U11_A A 26 ? A 11 ? 16 1 1 A A 27 1_555 A G 110 1_555 -6.910 -4.714 0.248 5.383 -14.288 -13.523 12 A_A27:G110_A A 27 ? A 110 ? 11 10 1 A C 28 1_555 A G 109 1_555 0.075 -0.216 -0.030 1.834 -4.866 -0.113 13 A_C28:G109_A A 28 ? A 109 ? 19 1 1 A G 29 1_555 A C 108 1_555 -0.094 -0.301 -0.674 -10.328 -6.124 1.521 14 A_G29:C108_A A 29 ? A 108 ? 19 1 1 A G 30 1_555 A C 107 1_555 -0.023 -0.164 -0.286 -6.825 2.928 -1.576 15 A_G30:C107_A A 30 ? A 107 ? 19 1 1 A A 31 1_555 A U 106 1_555 -0.194 -0.149 0.063 1.766 -0.091 1.465 16 A_A31:U106_A A 31 ? A 106 ? 20 1 1 A G 32 1_555 A C 105 1_555 -0.160 -0.301 -0.239 -2.313 -12.252 0.296 17 A_G32:C105_A A 32 ? A 105 ? 19 1 1 A G 33 1_555 A A 104 1_555 6.897 -4.061 -0.192 -9.213 -16.129 -6.923 18 A_G33:A104_A A 33 ? A 104 ? 11 10 1 A C 36 1_555 A C 101 1_555 -4.042 -1.816 0.221 3.910 -11.955 0.922 19 A_C36:C101_A A 36 ? A 101 ? ? 1 1 A C 37 1_555 A G 100 1_555 0.336 -0.009 0.135 8.370 -8.581 1.142 20 A_C37:G100_A A 37 ? A 100 ? 19 1 1 A C 91 1_555 A U 50 1_555 -7.031 -4.868 0.719 -26.275 8.761 -7.610 21 A_C91:U50_A A 91 ? A 50 ? ? ? 1 A A 92 1_555 A U 49 1_555 0.140 -0.033 -0.103 -8.935 15.083 0.777 22 A_A92:U49_A A 92 ? A 49 ? 20 1 1 A C 93 1_555 A G 48 1_555 -0.048 -0.202 -0.211 6.097 3.886 -1.781 23 A_C93:G48_A A 93 ? A 48 ? 19 1 1 A C 94 1_555 A G 47 1_555 0.266 -0.078 -0.669 11.119 -4.485 3.150 24 A_C94:G47_A A 94 ? A 47 ? 19 1 1 A C 95 1_555 A G 46 1_555 0.113 -0.128 -0.062 1.495 4.330 -0.100 25 A_C95:G46_A A 95 ? A 46 ? 19 1 1 A C 98 1_555 A G 45 1_555 -0.049 -0.219 -0.099 -2.709 -1.206 -1.062 26 A_C98:G45_A A 98 ? A 45 ? 19 1 1 A A 97 1_555 A U 43 1_555 0.098 -0.241 0.254 5.146 -3.233 -2.725 27 A_A97:U43_A A 97 ? A 43 ? 20 1 1 A G 64 1_555 A U 60 1_555 -3.712 -2.117 2.255 0.859 49.426 -18.098 28 A_G64:U60_A A 64 ? A 60 ? ? ? 1 A C 65 1_555 A G 59 1_555 0.717 -0.611 1.038 15.119 1.460 -0.359 29 A_C65:G59_A A 65 ? A 59 ? 19 1 1 A U 66 1_555 A A 58 1_555 -1.044 0.184 0.007 8.777 -20.363 7.271 30 A_U66:A58_A A 66 ? A 58 ? 20 1 1 A G 67 1_555 A C 57 1_555 -0.671 -0.183 -0.654 -1.860 -4.267 11.883 31 A_G67:C57_A A 67 ? A 57 ? 19 1 1 A C 68 1_555 A G 56 1_555 -0.352 -0.053 -0.737 -0.456 -11.576 -8.402 32 A_C68:G56_A A 68 ? A 56 ? 19 1 1 A A 69 1_555 A U 55 1_555 0.774 0.052 -0.004 -4.395 -6.101 -0.283 33 A_A69:U55_A A 69 ? A 55 ? 20 1 1 A G 70 1_555 A C 54 1_555 0.222 -0.099 -0.348 -8.868 -11.818 6.675 34 A_G70:C54_A A 70 ? A 54 ? 19 1 1 A U 71 1_555 A U 53 1_555 2.230 -1.750 0.262 -1.678 -13.285 16.706 35 A_U71:U53_A A 71 ? A 53 ? 16 1 1 A A 72 1_555 A G 90 1_555 -6.943 -4.447 -0.157 -4.363 -1.976 -9.671 36 A_A72:G90_A A 72 ? A 90 ? 11 10 1 A G 73 1_555 A C 89 1_555 -0.069 -0.293 -0.244 -2.259 -4.918 1.795 37 A_G73:C89_A A 73 ? A 89 ? 19 1 1 A G 74 1_555 A C 88 1_555 -0.074 -0.157 -0.227 -4.929 -3.263 4.854 38 A_G74:C88_A A 74 ? A 88 ? 19 1 1 A G 75 1_555 A C 87 1_555 0.047 -0.192 -0.242 -1.905 -1.463 -1.601 39 A_G75:C87_A A 75 ? A 87 ? 19 1 1 A A 76 1_555 A U 86 1_555 0.035 -0.028 -0.092 3.157 -5.883 0.831 40 A_A76:U86_A A 76 ? A 86 ? 20 1 1 A U 77 1_555 A G 85 1_555 2.266 -0.651 -0.488 13.474 -6.054 1.488 41 A_U77:G85_A A 77 ? A 85 ? 28 1 1 A G 121 1_555 A U 84 1_555 -2.377 -0.919 -0.212 -1.168 -9.594 -7.537 42 A_G121:U84_A A 121 ? A 84 ? 28 1 1 A G 122 1_555 A C 83 1_555 -0.040 -0.238 -0.192 -7.876 -13.151 0.617 43 A_G122:C83_A A 122 ? A 83 ? 19 1 1 A A 123 1_555 A U 82 1_555 -0.230 -0.144 -0.011 -4.161 -12.693 1.149 44 A_A123:U82_A A 123 ? A 82 ? 20 1 1 A A 124 1_555 A U 81 1_555 0.088 -0.047 0.348 -3.819 -3.738 -5.289 45 A_A124:U81_A A 124 ? A 81 ? 20 1 1 A G 125 1_555 A C 80 1_555 -0.353 -0.394 0.040 -1.136 -12.968 -1.268 46 A_G125:C80_A A 125 ? A 80 ? 19 1 1 A G 126 1_555 A C 79 1_555 -0.290 -0.257 -0.338 -12.008 -17.508 2.338 47 A_G126:C79_A A 126 ? A 79 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 4 1_555 A A 115 1_555 A G 5 1_555 A C 114 1_555 0.593 -1.526 3.549 -2.183 6.797 38.410 -3.137 -1.162 3.206 10.224 3.284 39.043 1 AA_U4G5:C114A115_AA A 4 ? A 115 ? A 5 ? A 114 ? 1 A G 5 1_555 A C 114 1_555 A C 6 1_555 A G 113 1_555 -0.880 -2.199 3.045 -3.471 0.030 30.127 -4.209 1.021 3.123 0.057 6.649 30.322 2 AA_G5C6:G113C114_AA A 5 ? A 114 ? A 6 ? A 113 ? 1 A C 6 1_555 A G 113 1_555 A C 7 1_555 A G 112 1_555 -0.893 -2.202 3.292 -2.561 3.608 25.541 -5.882 1.301 3.031 8.084 5.738 25.915 3 AA_C6C7:G112G113_AA A 6 ? A 113 ? A 7 ? A 112 ? 1 A C 7 1_555 A G 112 1_555 A G 8 1_555 A A 111 1_555 -0.523 -0.851 3.074 1.393 7.023 46.209 -1.612 0.767 2.906 8.885 -1.762 46.730 4 AA_C7G8:A111G112_AA A 7 ? A 112 ? A 8 ? A 111 ? 1 A A 21 1_555 A C 16 1_555 A A 22 1_555 A C 15 1_555 0.038 -1.346 3.663 -4.457 2.597 49.186 -1.823 -0.412 3.576 3.110 5.338 49.439 5 AA_A21A22:C15C16_AA A 21 ? A 16 ? A 22 ? A 15 ? 1 A A 22 1_555 A C 15 1_555 A U 23 1_555 A A 14 1_555 0.696 -1.373 3.432 -2.684 8.589 44.130 -2.573 -1.153 3.081 11.292 3.529 44.993 6 AA_A22U23:A14C15_AA A 22 ? A 15 ? A 23 ? A 14 ? 1 A U 23 1_555 A A 14 1_555 A G 24 1_555 A C 13 1_555 -0.098 -1.536 3.435 -1.894 9.518 32.325 -4.176 -0.135 2.881 16.634 3.309 33.713 7 AA_U23G24:C13A14_AA A 23 ? A 14 ? A 24 ? A 13 ? 1 A G 24 1_555 A C 13 1_555 A G 25 1_555 A C 12 1_555 0.287 -2.504 3.524 -1.477 3.655 27.732 -6.061 -0.952 3.155 7.576 3.061 28.006 8 AA_G24G25:C12C13_AA A 24 ? A 13 ? A 25 ? A 12 ? 1 A G 25 1_555 A C 12 1_555 A U 26 1_555 A U 11 1_555 0.583 -1.864 3.475 -2.925 4.213 40.642 -3.138 -1.162 3.226 6.037 4.191 40.950 9 AA_G25U26:U11C12_AA A 25 ? A 12 ? A 26 ? A 11 ? 1 A U 26 1_555 A U 11 1_555 A A 27 1_555 A G 110 1_555 0.226 0.039 3.032 -1.201 2.707 21.708 -0.869 -1.027 2.997 7.144 3.170 21.907 10 AA_U26A27:G110U11_AA A 26 ? A 11 ? A 27 ? A 110 ? 1 A A 27 1_555 A G 110 1_555 A C 28 1_555 A G 109 1_555 1.473 -1.057 3.459 -0.583 7.679 62.326 -1.374 -1.442 3.309 7.389 0.561 62.752 11 AA_A27C28:G109G110_AA A 27 ? A 110 ? A 28 ? A 109 ? 1 A C 28 1_555 A G 109 1_555 A G 29 1_555 A C 108 1_555 0.945 -2.573 3.737 7.252 6.392 26.936 -6.796 -0.116 3.196 13.194 -14.970 28.588 12 AA_C28G29:C108G109_AA A 28 ? A 109 ? A 29 ? A 108 ? 1 A G 29 1_555 A C 108 1_555 A G 30 1_555 A C 107 1_555 -0.862 -2.358 3.188 -4.955 2.984 28.020 -5.424 0.666 3.030 6.082 10.098 28.599 13 AA_G29G30:C107C108_AA A 29 ? A 108 ? A 30 ? A 107 ? 1 A G 30 1_555 A C 107 1_555 A A 31 1_555 A U 106 1_555 -0.013 -2.089 3.158 -2.333 -1.644 27.882 -3.931 -0.515 3.263 -3.401 4.825 28.024 14 AA_G30A31:U106C107_AA A 30 ? A 107 ? A 31 ? A 106 ? 1 A A 31 1_555 A U 106 1_555 A G 32 1_555 A C 105 1_555 0.240 -2.017 3.498 4.280 1.836 31.887 -3.980 0.374 3.382 3.320 -7.739 32.216 15 AA_A31G32:C105U106_AA A 31 ? A 106 ? A 32 ? A 105 ? 1 A G 32 1_555 A C 105 1_555 A G 33 1_555 A A 104 1_555 -0.988 -0.831 3.731 2.197 8.116 61.362 -1.230 1.075 3.573 7.913 -2.142 61.880 16 AA_G32G33:A104C105_AA A 32 ? A 105 ? A 33 ? A 104 ? 1 A C 36 1_555 A C 101 1_555 A C 37 1_555 A G 100 1_555 0.254 -0.913 3.256 -0.974 4.868 50.349 -1.407 -0.365 3.155 5.706 1.141 50.577 17 AA_C36C37:G100C101_AA A 36 ? A 101 ? A 37 ? A 100 ? 1 A C 91 1_555 A U 50 1_555 A A 92 1_555 A U 49 1_555 0.880 -0.869 2.912 -1.854 11.197 54.914 -1.479 -1.029 2.674 11.999 1.986 55.985 18 AA_C91A92:U49U50_AA A 91 ? A 50 ? A 92 ? A 49 ? 1 A A 92 1_555 A U 49 1_555 A C 93 1_555 A G 48 1_555 0.235 -2.013 3.107 2.231 0.462 26.064 -4.567 0.054 3.080 1.022 -4.935 26.161 19 AA_A92C93:G48U49_AA A 92 ? A 49 ? A 93 ? A 48 ? 1 A C 93 1_555 A G 48 1_555 A C 94 1_555 A G 47 1_555 0.955 -2.184 3.261 5.170 -1.883 28.500 -3.925 -0.717 3.509 -3.781 -10.380 29.015 20 AA_C93C94:G47G48_AA A 93 ? A 48 ? A 94 ? A 47 ? 1 A C 94 1_555 A G 47 1_555 A C 95 1_555 A G 46 1_555 -0.704 -2.360 3.745 -3.748 3.410 27.322 -5.831 0.460 3.494 7.141 7.848 27.779 21 AA_C94C95:G46G47_AA A 94 ? A 47 ? A 95 ? A 46 ? 1 A C 95 1_555 A G 46 1_555 A C 98 1_555 A G 45 1_555 -2.843 -1.486 3.179 -2.192 3.301 49.603 -2.002 3.222 3.195 3.927 2.608 49.751 22 AA_C95C98:G45G46_AA A 95 ? A 46 ? A 98 ? A 45 ? 1 A C 98 1_555 A G 45 1_555 A A 97 1_555 A U 43 1_555 0.102 -3.777 3.225 2.997 0.480 -7.269 26.021 9.939 3.168 -3.589 22.398 -7.876 23 AA_C98A97:U43G45_AA A 98 ? A 45 ? A 97 ? A 43 ? 1 A G 64 1_555 A U 60 1_555 A C 65 1_555 A G 59 1_555 -0.399 -2.206 3.044 1.369 23.361 36.860 -4.677 0.638 1.444 33.171 -1.943 43.442 24 AA_G64C65:G59U60_AA A 64 ? A 60 ? A 65 ? A 59 ? 1 A C 65 1_555 A G 59 1_555 A U 66 1_555 A A 58 1_555 0.764 -2.179 3.107 11.653 10.335 24.814 -6.290 0.709 2.187 21.552 -24.299 29.232 25 AA_C65U66:A58G59_AA A 65 ? A 59 ? A 66 ? A 58 ? 1 A U 66 1_555 A A 58 1_555 A G 67 1_555 A C 57 1_555 0.108 -1.090 3.492 -2.854 18.397 31.978 -4.184 -0.552 2.504 30.392 4.715 36.880 26 AA_U66G67:C57A58_AA A 66 ? A 58 ? A 67 ? A 57 ? 1 A G 67 1_555 A C 57 1_555 A C 68 1_555 A G 56 1_555 -0.587 -1.844 3.271 -0.167 9.797 32.516 -4.609 0.981 2.624 17.020 0.291 33.923 27 AA_G67C68:G56C57_AA A 67 ? A 57 ? A 68 ? A 56 ? 1 A C 68 1_555 A G 56 1_555 A A 69 1_555 A U 55 1_555 0.357 -0.881 3.553 -7.907 17.316 37.102 -3.131 -1.366 2.767 25.278 11.543 41.547 28 AA_C68A69:U55G56_AA A 68 ? A 56 ? A 69 ? A 55 ? 1 A A 69 1_555 A U 55 1_555 A G 70 1_555 A C 54 1_555 0.756 -2.511 3.556 3.277 0.666 19.638 -7.603 -0.501 3.547 1.935 -9.519 19.918 29 AA_A69G70:C54U55_AA A 69 ? A 55 ? A 70 ? A 54 ? 1 A G 70 1_555 A C 54 1_555 A U 71 1_555 A U 53 1_555 0.367 -0.958 3.024 -4.754 6.423 42.326 -1.875 -0.922 2.801 8.801 6.514 43.039 30 AA_G70U71:U53C54_AA A 70 ? A 54 ? A 71 ? A 53 ? 1 A U 71 1_555 A U 53 1_555 A A 72 1_555 A G 90 1_555 0.388 -0.084 3.465 -6.811 -1.718 24.933 0.311 -2.841 3.245 -3.882 15.388 25.889 31 AA_U71A72:G90U53_AA A 71 ? A 53 ? A 72 ? A 90 ? 1 A A 72 1_555 A G 90 1_555 A G 73 1_555 A C 89 1_555 0.952 -1.045 3.349 -0.545 4.287 58.515 -1.292 -1.000 3.264 4.379 0.557 58.660 32 AA_A72G73:C89G90_AA A 72 ? A 90 ? A 73 ? A 89 ? 1 A G 73 1_555 A C 89 1_555 A G 74 1_555 A C 88 1_555 0.712 -2.210 3.257 0.650 3.932 30.396 -4.922 -1.224 2.969 7.460 -1.232 30.650 33 AA_G73G74:C88C89_AA A 73 ? A 89 ? A 74 ? A 88 ? 1 A G 74 1_555 A C 88 1_555 A G 75 1_555 A C 87 1_555 -1.342 -2.300 3.193 -1.857 3.686 26.637 -5.824 2.432 2.939 7.939 4.000 26.949 34 AA_G74G75:C87C88_AA A 74 ? A 88 ? A 75 ? A 87 ? 1 A G 75 1_555 A C 87 1_555 A A 76 1_555 A U 86 1_555 -0.358 -1.766 3.219 -3.808 5.454 32.039 -4.029 0.012 2.909 9.751 6.807 32.704 35 AA_G75A76:U86C87_AA A 75 ? A 87 ? A 76 ? A 86 ? 1 A A 76 1_555 A U 86 1_555 A U 77 1_555 A G 85 1_555 0.096 -1.503 3.075 2.321 3.538 36.477 -2.831 0.139 2.922 5.630 -3.692 36.713 36 AA_A76U77:G85U86_AA A 76 ? A 86 ? A 77 ? A 85 ? 1 A U 77 1_555 A G 85 1_555 A G 121 1_555 A U 84 1_555 -3.053 -0.985 3.330 -11.569 11.961 33.608 -3.306 3.051 3.615 19.287 18.655 37.395 37 AA_U77G121:U84G85_AA A 77 ? A 85 ? A 121 ? A 84 ? 1 A G 121 1_555 A U 84 1_555 A G 122 1_555 A C 83 1_555 0.112 -1.429 3.545 -0.821 3.750 43.305 -2.316 -0.236 3.413 5.070 1.109 43.467 38 AA_G121G122:C83U84_AA A 121 ? A 84 ? A 122 ? A 83 ? 1 A G 122 1_555 A C 83 1_555 A A 123 1_555 A U 82 1_555 0.130 -1.425 3.115 0.060 5.895 30.835 -3.646 -0.230 2.801 10.962 -0.111 31.381 39 AA_G122A123:U82C83_AA A 122 ? A 83 ? A 123 ? A 82 ? 1 A A 123 1_555 A U 82 1_555 A A 124 1_555 A U 81 1_555 -0.492 -1.396 3.165 -1.857 10.169 35.418 -3.470 0.547 2.698 16.292 2.975 36.849 40 AA_A123A124:U81U82_AA A 123 ? A 82 ? A 124 ? A 81 ? 1 A A 124 1_555 A U 81 1_555 A G 125 1_555 A C 80 1_555 0.501 -1.178 3.285 2.684 12.572 30.369 -4.105 -0.452 2.638 22.760 -4.859 32.919 41 AA_A124G125:C80U81_AA A 124 ? A 81 ? A 125 ? A 80 ? 1 A G 125 1_555 A C 80 1_555 A G 126 1_555 A C 79 1_555 0.806 -2.062 3.525 2.401 8.456 30.639 -5.309 -1.028 2.920 15.604 -4.430 31.846 42 AA_G125G126:C79C80_AA A 125 ? A 80 ? A 126 ? A 79 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1616265 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 2BA 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 'SULFATE ION' SO4 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4QK8 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #