data_6N5R # _entry.id 6N5R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.342 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6N5R WWPDB D_1000238229 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2021-05-05 _pdbx_database_PDB_obs_spr.pdb_id 6WTR _pdbx_database_PDB_obs_spr.replace_pdb_id 6N5R _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6N5K unspecified PDB . 6N5L unspecified PDB . 6N5N unspecified PDB . 6N5O unspecified PDB . 6N5P unspecified PDB . 6N5Q unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6N5R _pdbx_database_status.recvd_initial_deposition_date 2018-11-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shoffner, G.M.' 1 0000-0001-5479-4203 'Peng, Z.' 2 0000-0001-7666-1276 'Guo, F.' 3 0000-0002-6245-1486 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Three-dimensional structures of pri-miRNA apical junctions and loops revealed by scaffold-directed crystallography' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shoffner, G.M.' 1 0000-0001-5479-4203 primary 'Peng, Z.' 2 0000-0001-7666-1276 primary 'Guo, F.' 3 0000-0002-6245-1486 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6N5R _cell.details ? _cell.formula_units_Z ? _cell.length_a 113.070 _cell.length_a_esd ? _cell.length_b 113.070 _cell.length_b_esd ? _cell.length_c 114.050 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N5R _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (125-MER)' 40492.895 1 ? ? ? ? 2 non-polymer syn ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 658.412 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GUUGCCGAAUCCUUUACUUGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUAC CUUCUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGUUGCCGAAUCCUUUACUUGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACCUUC UGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 U n 1 4 U n 1 5 G n 1 6 C n 1 7 C n 1 8 G n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 C n 1 14 U n 1 15 U n 1 16 U n 1 17 A n 1 18 C n 1 19 U n 1 20 U n 1 21 G n 1 22 G n 1 23 U n 1 24 A n 1 25 C n 1 26 G n 1 27 G n 1 28 A n 1 29 G n 1 30 G n 1 31 A n 1 32 A n 1 33 C n 1 34 C n 1 35 G n 1 36 C n 1 37 U n 1 38 U n 1 39 U n 1 40 U n 1 41 U n 1 42 G n 1 43 G n 1 44 G n 1 45 G n 1 46 U n 1 47 U n 1 48 A n 1 49 A n 1 50 U n 1 51 C n 1 52 U n 1 53 G n 1 54 C n 1 55 A n 1 56 G n 1 57 U n 1 58 G n 1 59 A n 1 60 A n 1 61 G n 1 62 C n 1 63 U n 1 64 G n 1 65 C n 1 66 A n 1 67 G n 1 68 U n 1 69 A n 1 70 G n 1 71 G n 1 72 G n 1 73 A n 1 74 U n 1 75 A n 1 76 C n 1 77 C n 1 78 U n 1 79 U n 1 80 C n 1 81 U n 1 82 G n 1 83 U n 1 84 C n 1 85 C n 1 86 C n 1 87 G n 1 88 C n 1 89 A n 1 90 C n 1 91 C n 1 92 C n 1 93 G n 1 94 A n 1 95 C n 1 96 A n 1 97 G n 1 98 C n 1 99 U n 1 100 A n 1 101 A n 1 102 C n 1 103 U n 1 104 C n 1 105 C n 1 106 G n 1 107 G n 1 108 A n 1 109 G n 1 110 G n 1 111 C n 1 112 A n 1 113 A n 1 114 U n 1 115 A n 1 116 A n 1 117 A n 1 118 G n 1 119 G n 1 120 A n 1 121 A n 1 122 G n 1 123 G n 1 124 A n 1 125 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 125 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-Fluc(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905932 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6N5R _struct_ref.pdbx_db_accession 6N5R _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6N5R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 125 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6N5R _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 125 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 125 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2BA non-polymer . ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 'C20 H24 N10 O12 P2' 658.412 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6N5R _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.20 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 76.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details 'Room Temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.90 M (NH4)2SO4, 0.158 M Li2SO4, and 0.1 M HEPES pH 7.4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-12-20 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Water-cooled flat double Si(111) Khozu monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.116 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.116 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6N5R _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.082 _reflns.d_resolution_low 74.295 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15788 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 18.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.092 _reflns.pdbx_Rpim_I_all 0.021 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.082 _reflns_shell.d_res_low 3.19 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1579 _reflns_shell.percent_possible_all 92.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 15.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.43 _reflns_shell.pdbx_Rpim_I_all 0.344 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.903 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 502.140 _refine.B_iso_mean 128.7935 _refine.B_iso_min 31.110 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6N5R _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.0820 _refine.ls_d_res_low 74.2950 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15788 _refine.ls_number_reflns_R_free 1581 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.8000 _refine.ls_percent_reflns_R_free 10.0100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1673 _refine.ls_R_factor_R_free 0.1898 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1648 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4QK8 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.3700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.0820 _refine_hist.d_res_low 74.2950 _refine_hist.pdbx_number_atoms_ligand 97 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 2777 _refine_hist.pdbx_number_residues_total 125 _refine_hist.pdbx_B_iso_mean_ligand 83.76 _refine_hist.pdbx_B_iso_mean_solvent 57.53 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2676 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.0822 3.1817 1296 . 128 1168 91.0000 . . . 0.4322 0.0000 0.4179 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 3.1817 3.2954 1424 . 143 1281 100.0000 . . . 0.2999 0.0000 0.2750 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 3.2954 3.4274 1431 . 144 1287 99.0000 . . . 0.2838 0.0000 0.2190 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 3.4274 3.5833 1418 . 142 1276 99.0000 . . . 0.2321 0.0000 0.2097 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 3.5833 3.7723 1421 . 142 1279 99.0000 . . . 0.2420 0.0000 0.1991 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 3.7723 4.0086 1427 . 144 1283 99.0000 . . . 0.2396 0.0000 0.1855 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 4.0086 4.3181 1432 . 143 1289 99.0000 . . . 0.2165 0.0000 0.1642 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 4.3181 4.7525 1452 . 146 1306 100.0000 . . . 0.1770 0.0000 0.1534 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 4.7525 5.4401 1462 . 146 1316 100.0000 . . . 0.1768 0.0000 0.1459 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 5.4401 6.8531 1470 . 147 1323 100.0000 . . . 0.1561 0.0000 0.1423 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 6.8531 74.3162 1555 . 156 1399 100.0000 . . . 0.1435 0.0000 0.1339 . . . . . . 11 . . . # _struct.entry_id 6N5R _struct.title 'Structure of Human pir-miRNA-300 Apical Loop Fused to the YdaO Riboswitch Scaffold' _struct.pdbx_descriptor RNA _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6N5R _struct_keywords.text 'microRNA, RNA processing, Protein-RNA interaction, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.561 ? ? metalc1 metalc ? ? A A 28 OP1 ? ? ? 1_555 E MG . MG ? ? A A 28 A MG 204 1_555 ? ? ? ? ? ? ? 2.463 ? ? metalc2 metalc ? ? A G 30 OP2 ? ? ? 1_555 D MG . MG ? ? A G 30 A MG 203 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc3 metalc ? ? A U 46 OP1 ? ? ? 1_555 E MG . MG ? ? A U 46 A MG 204 1_555 ? ? ? ? ? ? ? 2.283 ? ? metalc4 metalc ? ? A G 97 OP1 ? ? ? 1_555 D MG . MG ? ? A G 97 A MG 203 1_555 ? ? ? ? ? ? ? 2.474 ? ? metalc5 metalc ? ? A G 97 OP2 ? ? ? 1_555 G MG . MG ? ? A G 97 A MG 206 1_555 ? ? ? ? ? ? ? 2.218 ? ? metalc6 metalc ? ? A C 98 OP2 ? ? ? 1_555 D MG . MG ? ? A C 98 A MG 203 1_555 ? ? ? ? ? ? ? 2.027 ? ? metalc7 metalc ? ? A U 99 O4 ? ? ? 1_555 D MG . MG ? ? A U 99 A MG 203 1_555 ? ? ? ? ? ? ? 2.408 ? ? hydrog1 hydrog ? ? A G 2 N2 ? ? ? 1_555 A G 8 O6 ? ? A G 2 A G 8 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog2 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 112 N1 ? ? A U 4 A A 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 112 N6 ? ? A U 4 A A 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 111 N3 ? ? A G 5 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 111 O2 ? ? A G 5 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 111 N4 ? ? A G 5 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 110 N1 ? ? A C 6 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 110 O6 ? ? A C 6 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 110 N2 ? ? A C 6 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 109 N1 ? ? A C 7 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 109 O6 ? ? A C 7 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 109 N2 ? ? A C 7 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 108 N7 ? ? A G 8 A A 108 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 108 N6 ? ? A G 8 A A 108 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog15 hydrog ? ? A A 9 N3 ? ? ? 1_555 A G 106 N2 ? ? A A 9 A G 106 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog16 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 23 O2 ? ? A U 11 A U 23 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog17 hydrog ? ? A U 11 O4 ? ? ? 1_555 A U 23 N3 ? ? A U 11 A U 23 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog18 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 12 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 12 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 12 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 13 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 13 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 13 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 14 N3 ? ? ? 1_555 A U 20 O4 ? ? A U 14 A U 20 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog25 hydrog ? ? A U 14 O2 ? ? ? 1_555 A U 20 N3 ? ? A U 14 A U 20 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog26 hydrog ? ? A U 15 N3 ? ? ? 1_555 A U 19 O2 ? ? A U 15 A U 19 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog27 hydrog ? ? A A 24 N6 ? ? ? 1_555 A G 107 N3 ? ? A A 24 A G 107 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? A A 24 N7 ? ? ? 1_555 A G 107 N2 ? ? A A 24 A G 107 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 106 N1 ? ? A C 25 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 106 O6 ? ? A C 25 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 106 N2 ? ? A C 25 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 105 N3 ? ? A G 26 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 105 O2 ? ? A G 26 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 105 N4 ? ? A G 26 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 104 N3 ? ? A G 27 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 104 O2 ? ? A G 27 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 104 N4 ? ? A G 27 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 28 N1 ? ? ? 1_555 A U 103 N3 ? ? A A 28 A U 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 28 N6 ? ? ? 1_555 A U 103 O4 ? ? A A 28 A U 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 102 N3 ? ? A G 29 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 102 O2 ? ? A G 29 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 102 N4 ? ? A G 29 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 30 N2 ? ? ? 1_555 A A 101 N7 ? ? A G 30 A A 101 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog44 hydrog ? ? A G 30 N3 ? ? ? 1_555 A A 101 N6 ? ? A G 30 A A 101 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog45 hydrog ? ? A C 33 N4 ? ? ? 1_555 A C 98 O2 ? ? A C 33 A C 98 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog46 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 97 N1 ? ? A C 34 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 97 O6 ? ? A C 34 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 97 N2 ? ? A C 34 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 40 N3 ? ? ? 1_555 A A 94 N1 ? ? A U 40 A A 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A U 40 O4 ? ? ? 1_555 A A 94 N6 ? ? A U 40 A A 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 42 O6 ? ? ? 1_555 A G 93 N2 ? ? A G 42 A G 93 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog52 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 95 N3 ? ? A G 42 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 95 O2 ? ? A G 42 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 95 N4 ? ? A G 42 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 43 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 43 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 43 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 43 N2 ? ? ? 1_555 A A 96 N1 ? ? A G 43 A A 96 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog59 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 91 N3 ? ? A G 44 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 91 O2 ? ? A G 44 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 91 N4 ? ? A G 44 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 45 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 45 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 45 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 46 N3 ? ? ? 1_555 A A 89 N1 ? ? A U 46 A A 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 46 O4 ? ? ? 1_555 A A 89 N6 ? ? A U 46 A A 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 47 O2 ? ? ? 1_555 A C 88 N4 ? ? A U 47 A C 88 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog68 hydrog ? ? A A 48 N3 ? ? ? 1_555 A G 70 N2 ? ? A A 48 A G 70 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog69 hydrog ? ? A U 50 N3 ? ? ? 1_555 A U 68 O2 ? ? A U 50 A U 68 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog70 hydrog ? ? A U 50 O4 ? ? ? 1_555 A U 68 N3 ? ? A U 50 A U 68 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog71 hydrog ? ? A C 51 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 51 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 51 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 51 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 51 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 51 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 52 N3 ? ? ? 1_555 A A 66 N1 ? ? A U 52 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 52 O4 ? ? ? 1_555 A A 66 N6 ? ? A U 52 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 53 A C 65 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog77 hydrog ? ? A C 54 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 54 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 54 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 54 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 54 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 54 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A A 55 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 55 A U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A A 55 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 55 A U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 56 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 56 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 56 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 56 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 56 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 56 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A U 57 N3 ? ? ? 1_555 A G 61 O6 ? ? A U 57 A G 61 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog86 hydrog ? ? A A 69 N6 ? ? ? 1_555 A G 87 N3 ? ? A A 69 A G 87 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog87 hydrog ? ? A A 69 N7 ? ? ? 1_555 A G 87 N2 ? ? A A 69 A G 87 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog88 hydrog ? ? A G 70 N1 ? ? ? 1_555 A C 86 N3 ? ? A G 70 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 70 N2 ? ? ? 1_555 A C 86 O2 ? ? A G 70 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 70 O6 ? ? ? 1_555 A C 86 N4 ? ? A G 70 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 71 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 71 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 71 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 71 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 71 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 71 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 72 N1 ? ? ? 1_555 A C 84 N3 ? ? A G 72 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 72 N2 ? ? ? 1_555 A C 84 O2 ? ? A G 72 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 72 O6 ? ? ? 1_555 A C 84 N4 ? ? A G 72 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A A 73 N1 ? ? ? 1_555 A U 83 N3 ? ? A A 73 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A A 73 N6 ? ? ? 1_555 A U 83 O4 ? ? A A 73 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A U 74 N3 ? ? ? 1_555 A G 82 O6 ? ? A U 74 A G 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog100 hydrog ? ? A U 74 O2 ? ? ? 1_555 A G 82 N1 ? ? A U 74 A G 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog101 hydrog ? ? A C 76 N3 ? ? ? 1_555 A G 123 N1 ? ? A C 76 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 76 N4 ? ? ? 1_555 A G 123 O6 ? ? A C 76 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 76 O2 ? ? ? 1_555 A G 123 N2 ? ? A C 76 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A C 77 N3 ? ? ? 1_555 A G 122 N1 ? ? A C 77 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A C 77 N4 ? ? ? 1_555 A G 122 O6 ? ? A C 77 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A C 77 O2 ? ? ? 1_555 A G 122 N2 ? ? A C 77 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A U 78 N3 ? ? ? 1_555 A A 121 N1 ? ? A U 78 A A 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A U 78 O4 ? ? ? 1_555 A A 121 N6 ? ? A U 78 A A 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A U 79 N3 ? ? ? 1_555 A A 120 N1 ? ? A U 79 A A 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A U 79 O4 ? ? ? 1_555 A A 120 N6 ? ? A U 79 A A 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A C 80 N3 ? ? ? 1_555 A G 119 N1 ? ? A C 80 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A C 80 N4 ? ? ? 1_555 A G 119 O6 ? ? A C 80 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A C 80 O2 ? ? ? 1_555 A G 119 N2 ? ? A C 80 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A U 81 N3 ? ? ? 1_555 A G 118 O6 ? ? A U 81 A G 118 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog115 hydrog ? ? A U 81 O2 ? ? ? 1_555 A G 118 N1 ? ? A U 81 A G 118 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog116 hydrog ? ? A G 82 N2 ? ? ? 1_555 A A 116 N3 ? ? A G 82 A A 116 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog117 hydrog ? ? A C 92 O2 ? ? ? 1_555 A A 96 N6 ? ? A C 92 A A 96 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog118 hydrog ? ? A G 93 N3 ? ? ? 1_555 A C 95 N4 ? ? A G 93 A C 95 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2BA 201 ? 15 'binding site for residue 2BA A 201' AC2 Software A 2BA 202 ? 14 'binding site for residue 2BA A 202' AC3 Software A MG 203 ? 5 'binding site for residue MG A 203' AC4 Software A MG 204 ? 2 'binding site for residue MG A 204' AC5 Software A K 205 ? 1 'binding site for residue K A 205' AC6 Software A MG 206 ? 1 'binding site for residue MG A 206' AC7 Software A SO4 207 ? 3 'binding site for residue SO4 A 207' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 15 C A 6 ? C A 6 . ? 1_555 ? 3 AC1 15 C A 7 ? C A 7 . ? 1_555 ? 4 AC1 15 G A 8 ? G A 8 . ? 1_555 ? 5 AC1 15 A A 48 ? A A 48 . ? 1_555 ? 6 AC1 15 G A 71 ? G A 71 . ? 1_555 ? 7 AC1 15 G A 72 ? G A 72 . ? 1_555 ? 8 AC1 15 A A 73 ? A A 73 . ? 1_555 ? 9 AC1 15 U A 74 ? U A 74 . ? 1_555 ? 10 AC1 15 A A 75 ? A A 75 . ? 1_555 ? 11 AC1 15 C A 85 ? C A 85 . ? 1_555 ? 12 AC1 15 C A 86 ? C A 86 . ? 1_555 ? 13 AC1 15 G A 110 ? G A 110 . ? 1_555 ? 14 AC1 15 C A 111 ? C A 111 . ? 1_555 ? 15 AC1 15 A A 112 ? A A 112 . ? 1_555 ? 16 AC2 14 A A 9 ? A A 9 . ? 1_555 ? 17 AC2 14 G A 26 ? G A 26 . ? 1_555 ? 18 AC2 14 G A 27 ? G A 27 . ? 1_555 ? 19 AC2 14 A A 28 ? A A 28 . ? 1_555 ? 20 AC2 14 G A 29 ? G A 29 . ? 1_555 ? 21 AC2 14 G A 44 ? G A 44 . ? 1_555 ? 22 AC2 14 G A 45 ? G A 45 . ? 1_555 ? 23 AC2 14 U A 46 ? U A 46 . ? 1_555 ? 24 AC2 14 U A 47 ? U A 47 . ? 1_555 ? 25 AC2 14 C A 91 ? C A 91 . ? 1_555 ? 26 AC2 14 C A 92 ? C A 92 . ? 1_555 ? 27 AC2 14 A A 96 ? A A 96 . ? 1_555 ? 28 AC2 14 C A 105 ? C A 105 . ? 1_555 ? 29 AC2 14 G A 106 ? G A 106 . ? 1_555 ? 30 AC3 5 G A 30 ? G A 30 . ? 1_555 ? 31 AC3 5 A A 96 ? A A 96 . ? 1_555 ? 32 AC3 5 G A 97 ? G A 97 . ? 1_555 ? 33 AC3 5 C A 98 ? C A 98 . ? 1_555 ? 34 AC3 5 U A 99 ? U A 99 . ? 1_555 ? 35 AC4 2 A A 28 ? A A 28 . ? 1_555 ? 36 AC4 2 U A 46 ? U A 46 . ? 1_555 ? 37 AC5 1 GTP A 1 ? GTP A 1 . ? 1_555 ? 38 AC6 1 G A 97 ? G A 97 . ? 1_555 ? 39 AC7 3 A A 32 ? A A 32 . ? 1_555 ? 40 AC7 3 C A 98 ? C A 98 . ? 1_555 ? 41 AC7 3 U A 99 ? U A 99 . ? 1_555 ? # _atom_sites.entry_id 6N5R _atom_sites.fract_transf_matrix[1][1] 0.008844 _atom_sites.fract_transf_matrix[1][2] 0.005106 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010212 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008768 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 U 16 16 16 U U A . n A 1 17 A 17 17 17 A A A . n A 1 18 C 18 18 18 C C A . n A 1 19 U 19 19 19 U U A . n A 1 20 U 20 20 20 U U A . n A 1 21 G 21 21 21 G G A . n A 1 22 G 22 22 22 G G A . n A 1 23 U 23 23 23 U U A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 G 26 26 26 G G A . n A 1 27 G 27 27 27 G G A . n A 1 28 A 28 28 28 A A A . n A 1 29 G 29 29 29 G G A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 A 32 32 32 A A A . n A 1 33 C 33 33 33 C C A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 C 36 36 36 C C A . n A 1 37 U 37 37 37 U U A . n A 1 38 U 38 38 38 U U A . n A 1 39 U 39 39 39 U U A . n A 1 40 U 40 40 40 U U A . n A 1 41 U 41 41 41 U U A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 G 44 44 44 G G A . n A 1 45 G 45 45 45 G G A . n A 1 46 U 46 46 46 U U A . n A 1 47 U 47 47 47 U U A . n A 1 48 A 48 48 48 A A A . n A 1 49 A 49 49 49 A A A . n A 1 50 U 50 50 50 U U A . n A 1 51 C 51 51 51 C C A . n A 1 52 U 52 52 52 U U A . n A 1 53 G 53 53 53 G G A . n A 1 54 C 54 54 54 C C A . n A 1 55 A 55 55 55 A A A . n A 1 56 G 56 56 56 G G A . n A 1 57 U 57 57 57 U U A . n A 1 58 G 58 58 58 G G A . n A 1 59 A 59 59 59 A A A . n A 1 60 A 60 60 60 A A A . n A 1 61 G 61 61 61 G G A . n A 1 62 C 62 62 62 C C A . n A 1 63 U 63 63 63 U U A . n A 1 64 G 64 64 64 G G A . n A 1 65 C 65 65 65 C C A . n A 1 66 A 66 66 66 A A A . n A 1 67 G 67 67 67 G G A . n A 1 68 U 68 68 68 U U A . n A 1 69 A 69 69 69 A A A . n A 1 70 G 70 70 70 G G A . n A 1 71 G 71 71 71 G G A . n A 1 72 G 72 72 72 G G A . n A 1 73 A 73 73 73 A A A . n A 1 74 U 74 74 74 U U A . n A 1 75 A 75 75 75 A A A . n A 1 76 C 76 76 76 C C A . n A 1 77 C 77 77 77 C C A . n A 1 78 U 78 78 78 U U A . n A 1 79 U 79 79 79 U U A . n A 1 80 C 80 80 80 C C A . n A 1 81 U 81 81 81 U U A . n A 1 82 G 82 82 82 G G A . n A 1 83 U 83 83 83 U U A . n A 1 84 C 84 84 84 C C A . n A 1 85 C 85 85 85 C C A . n A 1 86 C 86 86 86 C C A . n A 1 87 G 87 87 87 G G A . n A 1 88 C 88 88 88 C C A . n A 1 89 A 89 89 89 A A A . n A 1 90 C 90 90 90 C C A . n A 1 91 C 91 91 91 C C A . n A 1 92 C 92 92 92 C C A . n A 1 93 G 93 93 93 G G A . n A 1 94 A 94 94 94 A A A . n A 1 95 C 95 95 95 C C A . n A 1 96 A 96 96 96 A A A . n A 1 97 G 97 97 97 G G A . n A 1 98 C 98 98 98 C C A . n A 1 99 U 99 99 99 U U A . n A 1 100 A 100 100 100 A A A . n A 1 101 A 101 101 101 A A A . n A 1 102 C 102 102 102 C C A . n A 1 103 U 103 103 103 U U A . n A 1 104 C 104 104 104 C C A . n A 1 105 C 105 105 105 C C A . n A 1 106 G 106 106 106 G G A . n A 1 107 G 107 107 107 G G A . n A 1 108 A 108 108 108 A A A . n A 1 109 G 109 109 109 G G A . n A 1 110 G 110 110 110 G G A . n A 1 111 C 111 111 111 C C A . n A 1 112 A 112 112 112 A A A . n A 1 113 A 113 113 113 A A A . n A 1 114 U 114 114 114 U U A . n A 1 115 A 115 115 115 A A A . n A 1 116 A 116 116 116 A A A . n A 1 117 A 117 117 117 A A A . n A 1 118 G 118 118 118 G G A . n A 1 119 G 119 119 119 G G A . n A 1 120 A 120 120 120 A A A . n A 1 121 A 121 121 121 A A A . n A 1 122 G 122 122 122 G G A . n A 1 123 G 123 123 123 G G A . n A 1 124 A 124 124 124 A A A . n A 1 125 G 125 125 125 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2BA 1 201 201 2BA 2BA A . C 2 2BA 1 202 202 2BA 2BA A . D 3 MG 1 203 203 MG MG A . E 3 MG 1 204 204 MG MG A . F 4 K 1 205 205 K K A . G 3 MG 1 206 206 MG MG A . H 5 SO4 1 207 208 SO4 SO4 A . I 6 HOH 1 401 401 HOH HOH A . I 6 HOH 2 402 403 HOH HOH A . I 6 HOH 3 403 404 HOH HOH A . I 6 HOH 4 404 402 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 28 ? A A 28 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 OP1 ? A U 46 ? A U 46 ? 1_555 74.2 ? 2 OP2 ? A G 30 ? A G 30 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP1 ? A G 97 ? A G 97 ? 1_555 81.4 ? 3 OP2 ? A G 30 ? A G 30 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 98 ? A C 98 ? 1_555 158.6 ? 4 OP1 ? A G 97 ? A G 97 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 98 ? A C 98 ? 1_555 79.4 ? 5 OP2 ? A G 30 ? A G 30 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 99 ? A U 99 ? 1_555 80.1 ? 6 OP1 ? A G 97 ? A G 97 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 99 ? A U 99 ? 1_555 77.2 ? 7 OP2 ? A C 98 ? A C 98 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 99 ? A U 99 ? 1_555 86.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-11-27 2 'Structure model' 1 1 2021-05-05 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Obsolete ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' Other 4 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' entity 3 2 'Structure model' pdbx_database_PDB_obs_spr 4 2 'Structure model' pdbx_database_status 5 2 'Structure model' pdbx_entity_nonpoly # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.name' 2 2 'Structure model' '_entity.pdbx_description' 3 2 'Structure model' '_pdbx_database_status.status_code' 4 2 'Structure model' '_pdbx_database_status.status_code_sf' 5 2 'Structure model' '_pdbx_entity_nonpoly.name' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GTP 1 ? PG ? A GTP 1 PG 2 1 Y 1 A GTP 1 ? O1G ? A GTP 1 O1G 3 1 Y 1 A GTP 1 ? O2G ? A GTP 1 O2G 4 1 Y 1 A GTP 1 ? O3G ? A GTP 1 O3G # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6N5R 'double helix' 6N5R 'a-form double helix' 6N5R 'hairpin loop' 6N5R 'mismatched base pair' 6N5R 'internal loop' 6N5R 'quadruple helix' 6N5R 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 4 1_555 A A 112 1_555 -0.766 0.001 0.027 9.787 -15.815 0.973 1 A_U4:A112_A A 4 ? A 112 ? 20 1 1 A G 5 1_555 A C 111 1_555 -0.167 0.303 -0.214 -5.788 -12.960 4.550 2 A_G5:C111_A A 5 ? A 111 ? 19 1 1 A C 6 1_555 A G 110 1_555 1.027 -0.305 -0.281 5.418 -2.956 0.612 3 A_C6:G110_A A 6 ? A 110 ? 19 1 1 A C 7 1_555 A G 109 1_555 -0.103 -0.004 -0.287 14.973 4.322 -4.819 4 A_C7:G109_A A 7 ? A 109 ? 19 1 1 A G 8 1_555 A A 108 1_555 6.708 -3.832 0.431 31.099 4.865 1.308 5 A_G8:A108_A A 8 ? A 108 ? 11 9 1 A U 19 1_555 A U 15 1_555 0.582 -1.282 0.802 6.108 -47.422 32.714 6 A_U19:U15_A A 19 ? A 15 ? ? ? 1 A U 20 1_555 A U 14 1_555 -3.338 -1.999 0.145 -0.910 -21.858 7.566 7 A_U20:U14_A A 20 ? A 14 ? 16 1 1 A G 21 1_555 A C 13 1_555 -0.550 -0.057 -0.524 -15.694 -6.378 8.388 8 A_G21:C13_A A 21 ? A 13 ? 19 1 1 A G 22 1_555 A C 12 1_555 0.419 -0.218 -0.058 -3.535 -2.634 -4.023 9 A_G22:C12_A A 22 ? A 12 ? 19 1 1 A U 23 1_555 A U 11 1_555 2.152 -1.787 -0.170 1.449 -7.633 15.391 10 A_U23:U11_A A 23 ? A 11 ? 16 1 1 A A 24 1_555 A G 107 1_555 -7.018 -4.692 0.226 3.561 -11.065 -9.782 11 A_A24:G107_A A 24 ? A 107 ? 11 10 1 A C 25 1_555 A G 106 1_555 0.144 -0.275 0.074 2.506 -2.586 0.168 12 A_C25:G106_A A 25 ? A 106 ? 19 1 1 A G 26 1_555 A C 105 1_555 -0.149 -0.145 -0.483 -7.219 -4.483 4.166 13 A_G26:C105_A A 26 ? A 105 ? 19 1 1 A G 27 1_555 A C 104 1_555 -0.025 -0.026 -0.733 -9.797 0.545 -0.534 14 A_G27:C104_A A 27 ? A 104 ? 19 1 1 A A 28 1_555 A U 103 1_555 0.123 -0.081 -0.234 0.187 3.637 4.292 15 A_A28:U103_A A 28 ? A 103 ? 20 1 1 A G 29 1_555 A C 102 1_555 0.005 -0.414 -0.237 -6.942 -10.824 -3.158 16 A_G29:C102_A A 29 ? A 102 ? 19 1 1 A G 30 1_555 A A 101 1_555 7.032 -4.016 -0.213 -7.241 -10.978 -5.183 17 A_G30:A101_A A 30 ? A 101 ? 11 10 1 A C 33 1_555 A C 98 1_555 -4.289 -1.721 0.395 3.335 -7.990 2.627 18 A_C33:C98_A A 33 ? A 98 ? ? 1 1 A C 34 1_555 A G 97 1_555 0.528 -0.130 0.068 11.489 -11.103 -0.062 19 A_C34:G97_A A 34 ? A 97 ? 19 1 1 A C 88 1_555 A U 47 1_555 -7.032 -4.590 0.885 -25.721 6.004 -5.463 20 A_C88:U47_A A 88 ? A 47 ? ? ? 1 A A 89 1_555 A U 46 1_555 0.132 0.184 -0.479 -11.265 6.457 -0.722 21 A_A89:U46_A A 89 ? A 46 ? 20 1 1 A C 90 1_555 A G 45 1_555 0.281 -0.153 -0.384 6.809 -3.359 -1.275 22 A_C90:G45_A A 90 ? A 45 ? 19 1 1 A C 91 1_555 A G 44 1_555 0.205 0.039 -0.458 6.127 -6.104 5.348 23 A_C91:G44_A A 91 ? A 44 ? 19 1 1 A C 92 1_555 A G 43 1_555 0.115 -0.158 -0.182 0.915 2.769 -0.609 24 A_C92:G43_A A 92 ? A 43 ? 19 1 1 A C 95 1_555 A G 42 1_555 -0.107 -0.234 -0.101 0.684 -0.261 0.625 25 A_C95:G42_A A 95 ? A 42 ? 19 1 1 A A 94 1_555 A U 40 1_555 -0.076 -0.324 -0.029 7.432 0.611 -4.668 26 A_A94:U40_A A 94 ? A 40 ? 20 1 1 A G 61 1_555 A U 57 1_555 -3.433 -1.961 2.188 -2.191 43.116 -16.335 27 A_G61:U57_A A 61 ? A 57 ? ? ? 1 A C 62 1_555 A G 56 1_555 0.070 -0.277 0.394 4.176 -10.699 1.763 28 A_C62:G56_A A 62 ? A 56 ? 19 1 1 A U 63 1_555 A A 55 1_555 -0.707 0.108 0.150 -1.008 -13.419 5.549 29 A_U63:A55_A A 63 ? A 55 ? 20 1 1 A G 64 1_555 A C 54 1_555 -0.471 -0.022 -0.384 -3.446 4.026 9.711 30 A_G64:C54_A A 64 ? A 54 ? 19 1 1 A C 65 1_555 A G 53 1_555 -0.113 0.043 -0.881 2.239 -13.216 -17.519 31 A_C65:G53_A A 65 ? A 53 ? ? 1 1 A A 66 1_555 A U 52 1_555 0.536 -0.164 -0.147 -6.050 -14.805 -2.292 32 A_A66:U52_A A 66 ? A 52 ? 20 1 1 A G 67 1_555 A C 51 1_555 -0.328 -0.153 -0.003 -7.180 -13.832 2.797 33 A_G67:C51_A A 67 ? A 51 ? 19 1 1 A U 68 1_555 A U 50 1_555 2.694 -1.761 0.245 0.894 -17.117 13.119 34 A_U68:U50_A A 68 ? A 50 ? 16 1 1 A A 69 1_555 A G 87 1_555 -7.073 -4.501 -0.173 -7.412 0.998 -7.349 35 A_A69:G87_A A 69 ? A 87 ? 11 10 1 A G 70 1_555 A C 86 1_555 -0.126 -0.280 -0.344 -1.713 -3.823 3.993 36 A_G70:C86_A A 70 ? A 86 ? 19 1 1 A G 71 1_555 A C 85 1_555 0.000 -0.107 -0.037 -6.331 -7.672 4.609 37 A_G71:C85_A A 71 ? A 85 ? 19 1 1 A G 72 1_555 A C 84 1_555 -0.262 -0.090 -0.097 1.839 -1.019 -0.722 38 A_G72:C84_A A 72 ? A 84 ? 19 1 1 A A 73 1_555 A U 83 1_555 -0.192 -0.024 -0.345 2.074 -7.701 -1.802 39 A_A73:U83_A A 73 ? A 83 ? 20 1 1 A U 74 1_555 A G 82 1_555 2.144 -0.729 -0.527 13.311 -4.302 2.195 40 A_U74:G82_A A 74 ? A 82 ? 28 1 1 A G 118 1_555 A U 81 1_555 -2.087 -0.810 -0.219 -2.558 -9.467 -6.186 41 A_G118:U81_A A 118 ? A 81 ? 28 1 1 A G 119 1_555 A C 80 1_555 0.155 -0.236 -0.454 -10.927 -9.566 -4.279 42 A_G119:C80_A A 119 ? A 80 ? 19 1 1 A A 120 1_555 A U 79 1_555 0.071 0.092 -0.003 -4.263 -9.590 -0.556 43 A_A120:U79_A A 120 ? A 79 ? 20 1 1 A A 121 1_555 A U 78 1_555 -0.078 -0.082 0.382 -0.721 0.595 -3.225 44 A_A121:U78_A A 121 ? A 78 ? 20 1 1 A G 122 1_555 A C 77 1_555 -0.121 -0.346 -0.264 -4.583 -10.108 -4.688 45 A_G122:C77_A A 122 ? A 77 ? 19 1 1 A G 123 1_555 A C 76 1_555 -0.185 -0.171 -0.405 -14.682 -16.558 1.077 46 A_G123:C76_A A 123 ? A 76 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 4 1_555 A A 112 1_555 A G 5 1_555 A C 111 1_555 0.458 -1.423 3.666 -3.129 7.555 39.265 -3.007 -1.054 3.303 11.097 4.597 40.074 1 AA_U4G5:C111A112_AA A 4 ? A 112 ? A 5 ? A 111 ? 1 A G 5 1_555 A C 111 1_555 A C 6 1_555 A G 110 1_555 -0.957 -2.119 3.053 -3.262 1.791 31.830 -4.140 1.187 3.013 3.251 5.923 32.041 2 AA_G5C6:G110C111_AA A 5 ? A 111 ? A 6 ? A 110 ? 1 A C 6 1_555 A G 110 1_555 A C 7 1_555 A G 109 1_555 -0.863 -2.153 3.352 -1.705 1.843 19.268 -7.294 1.710 3.197 5.476 5.067 19.429 3 AA_C6C7:G109G110_AA A 6 ? A 110 ? A 7 ? A 109 ? 1 A C 7 1_555 A G 109 1_555 A G 8 1_555 A A 108 1_555 -0.285 -0.929 3.063 -1.050 10.157 51.103 -1.677 0.261 2.848 11.641 1.204 52.046 4 AA_C7G8:A108G109_AA A 7 ? A 109 ? A 8 ? A 108 ? 1 A U 19 1_555 A U 15 1_555 A U 20 1_555 A U 14 1_555 -1.063 -0.726 2.801 -15.343 18.952 14.724 -5.339 -0.961 1.550 46.113 37.332 28.427 5 AA_U19U20:U14U15_AA A 19 ? A 15 ? A 20 ? A 14 ? 1 A U 20 1_555 A U 14 1_555 A G 21 1_555 A C 13 1_555 -0.200 -1.053 3.720 -3.258 12.076 40.126 -2.851 -0.093 3.289 17.104 4.614 41.953 6 AA_U20G21:C13U14_AA A 20 ? A 14 ? A 21 ? A 13 ? 1 A G 21 1_555 A C 13 1_555 A G 22 1_555 A C 12 1_555 -0.313 -2.541 3.160 -6.549 -0.599 26.544 -5.230 -0.944 3.199 -1.279 13.992 27.333 7 AA_G21G22:C12C13_AA A 21 ? A 13 ? A 22 ? A 12 ? 1 A G 22 1_555 A C 12 1_555 A U 23 1_555 A U 11 1_555 0.567 -1.722 3.267 0.332 3.477 36.590 -3.194 -0.854 3.100 5.522 -0.527 36.751 8 AA_G22U23:U11C12_AA A 22 ? A 12 ? A 23 ? A 11 ? 1 A U 23 1_555 A U 11 1_555 A A 24 1_555 A G 107 1_555 0.435 0.158 3.281 -1.721 2.083 22.016 -0.379 -1.781 3.239 5.429 4.485 22.179 9 AA_U23A24:G107U11_AA A 23 ? A 11 ? A 24 ? A 107 ? 1 A A 24 1_555 A G 107 1_555 A C 25 1_555 A G 106 1_555 1.466 -0.942 3.366 -1.611 8.031 64.570 -1.214 -1.432 3.208 7.486 1.502 65.032 10 AA_A24C25:G106G107_AA A 24 ? A 107 ? A 25 ? A 106 ? 1 A C 25 1_555 A G 106 1_555 A G 26 1_555 A C 105 1_555 1.082 -2.682 3.572 7.241 3.856 26.187 -6.685 -0.354 3.324 8.256 -15.503 27.420 11 AA_C25G26:C105G106_AA A 25 ? A 106 ? A 26 ? A 105 ? 1 A G 26 1_555 A C 105 1_555 A G 27 1_555 A C 104 1_555 -0.933 -2.401 3.386 0.061 6.159 27.331 -6.354 1.943 2.786 12.828 -0.128 28.004 12 AA_G26G27:C104C105_AA A 26 ? A 105 ? A 27 ? A 104 ? 1 A G 27 1_555 A C 104 1_555 A A 28 1_555 A U 103 1_555 -0.056 -1.723 3.153 -5.543 0.394 29.510 -3.405 -0.989 3.088 0.765 10.762 30.017 13 AA_G27A28:U103C104_AA A 27 ? A 104 ? A 28 ? A 103 ? 1 A A 28 1_555 A U 103 1_555 A G 29 1_555 A C 102 1_555 -0.245 -2.095 3.633 2.168 2.972 29.956 -4.675 0.945 3.388 5.722 -4.174 30.176 14 AA_A28G29:C102U103_AA A 28 ? A 103 ? A 29 ? A 102 ? 1 A G 29 1_555 A C 102 1_555 A G 30 1_555 A A 101 1_555 -0.847 -0.768 3.563 0.383 4.883 61.191 -1.002 0.849 3.494 4.788 -0.376 61.368 15 AA_G29G30:A101C102_AA A 29 ? A 102 ? A 30 ? A 101 ? 1 A C 33 1_555 A C 98 1_555 A C 34 1_555 A G 97 1_555 0.218 -0.833 3.185 2.187 2.222 51.508 -1.103 -0.107 3.155 2.554 -2.514 51.596 16 AA_C33C34:G97C98_AA A 33 ? A 98 ? A 34 ? A 97 ? 1 A C 88 1_555 A U 47 1_555 A A 89 1_555 A U 46 1_555 0.555 -0.696 3.046 2.070 13.461 54.027 -1.461 -0.486 2.830 14.559 -2.239 55.592 17 AA_C88A89:U46U47_AA A 88 ? A 47 ? A 89 ? A 46 ? 1 A A 89 1_555 A U 46 1_555 A C 90 1_555 A G 45 1_555 0.414 -1.842 3.134 0.360 0.503 27.278 -4.024 -0.793 3.105 1.066 -0.764 27.285 18 AA_A89C90:G45U46_AA A 89 ? A 46 ? A 90 ? A 45 ? 1 A C 90 1_555 A G 45 1_555 A C 91 1_555 A G 44 1_555 0.919 -2.208 3.471 2.468 0.896 27.072 -4.936 -1.296 3.466 1.909 -5.256 27.197 19 AA_C90C91:G44G45_AA A 90 ? A 45 ? A 91 ? A 44 ? 1 A C 91 1_555 A G 44 1_555 A C 92 1_555 A G 43 1_555 -0.828 -2.258 3.604 -2.464 1.950 28.591 -5.021 1.066 3.502 3.932 4.970 28.760 20 AA_C91C92:G43G44_AA A 91 ? A 44 ? A 92 ? A 43 ? 1 A C 92 1_555 A G 43 1_555 A C 95 1_555 A G 42 1_555 -2.930 -1.346 3.190 -1.601 2.284 47.718 -1.840 3.491 3.217 2.820 1.977 47.795 21 AA_C92C95:G42G43_AA A 92 ? A 43 ? A 95 ? A 42 ? 1 A C 95 1_555 A G 42 1_555 A A 94 1_555 A U 40 1_555 0.152 -3.685 3.308 2.999 0.453 -9.575 20.186 6.601 3.275 -2.630 17.402 -10.043 22 AA_C95A94:U40G42_AA A 95 ? A 42 ? A 94 ? A 40 ? 1 A G 61 1_555 A U 57 1_555 A C 62 1_555 A G 56 1_555 -0.137 -2.006 3.491 3.972 25.848 33.691 -5.082 0.544 1.597 38.262 -5.879 42.415 23 AA_G61C62:G56U57_AA A 61 ? A 57 ? A 62 ? A 56 ? 1 A C 62 1_555 A G 56 1_555 A U 63 1_555 A A 55 1_555 0.580 -1.744 3.019 5.142 9.139 30.589 -4.534 -0.255 2.472 16.718 -9.407 32.296 24 AA_C62U63:A55G56_AA A 62 ? A 56 ? A 63 ? A 55 ? 1 A U 63 1_555 A A 55 1_555 A G 64 1_555 A C 54 1_555 0.092 -1.327 3.100 -1.562 17.132 28.724 -4.705 -0.379 2.006 31.247 2.850 33.388 25 AA_U63G64:C54A55_AA A 63 ? A 55 ? A 64 ? A 54 ? 1 A G 64 1_555 A C 54 1_555 A C 65 1_555 A G 53 1_555 -1.178 -1.695 3.140 4.049 5.252 33.673 -3.616 2.569 2.697 8.958 -6.906 34.302 26 AA_G64C65:G53C54_AA A 64 ? A 54 ? A 65 ? A 53 ? 1 A C 65 1_555 A G 53 1_555 A A 66 1_555 A U 52 1_555 0.683 -1.013 3.549 -6.648 20.706 35.223 -3.669 -1.686 2.451 30.860 9.909 41.214 27 AA_C65A66:U52G53_AA A 65 ? A 53 ? A 66 ? A 52 ? 1 A A 66 1_555 A U 52 1_555 A G 67 1_555 A C 51 1_555 0.579 -2.716 3.292 -1.521 3.428 16.456 -11.310 -2.886 2.611 11.779 5.225 16.875 28 AA_A66G67:C51U52_AA A 66 ? A 52 ? A 67 ? A 51 ? 1 A G 67 1_555 A C 51 1_555 A U 68 1_555 A U 50 1_555 0.272 -0.825 3.176 -3.908 2.236 47.715 -1.186 -0.632 3.106 2.757 4.819 47.915 29 AA_G67U68:U50C51_AA A 67 ? A 51 ? A 68 ? A 50 ? 1 A U 68 1_555 A U 50 1_555 A A 69 1_555 A G 87 1_555 0.811 -0.332 3.562 -6.249 -0.633 21.464 -0.606 -4.553 3.207 -1.656 16.332 22.354 30 AA_U68A69:G87U50_AA A 68 ? A 50 ? A 69 ? A 87 ? 1 A A 69 1_555 A G 87 1_555 A G 70 1_555 A C 86 1_555 0.926 -0.884 3.289 -0.109 3.641 58.996 -1.082 -0.944 3.233 3.694 0.110 59.098 31 AA_A69G70:C86G87_AA A 69 ? A 87 ? A 70 ? A 86 ? 1 A G 70 1_555 A C 86 1_555 A G 71 1_555 A C 85 1_555 0.624 -2.141 3.395 -0.324 4.239 31.777 -4.636 -1.188 3.084 7.699 0.588 32.053 32 AA_G70G71:C85C86_AA A 70 ? A 86 ? A 71 ? A 85 ? 1 A G 71 1_555 A C 85 1_555 A G 72 1_555 A C 84 1_555 -1.325 -2.441 3.099 -1.914 -0.417 24.658 -5.575 2.530 3.231 -0.974 4.472 24.735 33 AA_G71G72:C84C85_AA A 71 ? A 85 ? A 72 ? A 84 ? 1 A G 72 1_555 A C 84 1_555 A A 73 1_555 A U 83 1_555 -0.234 -1.712 3.407 -0.421 6.797 31.601 -4.267 0.347 2.986 12.303 0.761 32.308 34 AA_G72A73:U83C84_AA A 72 ? A 84 ? A 73 ? A 83 ? 1 A A 73 1_555 A U 83 1_555 A U 74 1_555 A G 82 1_555 0.283 -1.418 3.033 1.501 5.713 37.853 -2.805 -0.263 2.806 8.742 -2.296 38.294 35 AA_A73U74:G82U83_AA A 73 ? A 83 ? A 74 ? A 82 ? 1 A U 74 1_555 A G 82 1_555 A G 118 1_555 A U 81 1_555 -3.047 -0.861 3.405 -9.733 11.417 35.542 -2.902 3.263 3.652 17.760 15.140 38.484 36 AA_U74G118:U81G82_AA A 74 ? A 82 ? A 118 ? A 81 ? 1 A G 118 1_555 A U 81 1_555 A G 119 1_555 A C 80 1_555 -0.145 -1.472 3.572 -1.487 8.554 43.304 -2.803 0.047 3.242 11.454 1.992 44.125 37 AA_G118G119:C80U81_AA A 118 ? A 81 ? A 119 ? A 80 ? 1 A G 119 1_555 A C 80 1_555 A A 120 1_555 A U 79 1_555 0.180 -1.521 3.036 -1.652 4.570 30.947 -3.589 -0.612 2.775 8.499 3.072 31.317 38 AA_G119A120:U79C80_AA A 119 ? A 80 ? A 120 ? A 79 ? 1 A A 120 1_555 A U 79 1_555 A A 121 1_555 A U 78 1_555 -0.262 -1.460 3.237 -1.815 4.696 32.615 -3.338 0.166 3.013 8.301 3.207 32.991 39 AA_A120A121:U78U79_AA A 120 ? A 79 ? A 121 ? A 78 ? 1 A A 121 1_555 A U 78 1_555 A G 122 1_555 A C 77 1_555 0.425 -1.374 3.389 5.647 16.987 32.426 -4.358 0.056 2.437 27.924 -9.283 36.922 40 AA_A121G122:C77U78_AA A 121 ? A 78 ? A 122 ? A 77 ? 1 A G 122 1_555 A C 77 1_555 A G 123 1_555 A C 76 1_555 0.871 -1.977 3.500 0.862 9.665 30.941 -5.222 -1.413 2.794 17.582 -1.568 32.392 41 AA_G122G123:C76C77_AA A 122 ? A 77 ? A 123 ? A 76 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1616265 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 2BA 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 'SULFATE ION' SO4 6 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #