HEADER SIGNALING PROTEIN 27-NOV-18 6N6R TITLE CRYSTAL STRUCTURE OF ABIN-1 UBAN IN COMPLEX WITH TWO M1-LINKED DI- TITLE 2 UBIQUITINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TNFAIP3-INTERACTING PROTEIN 1; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: A20-BINDING INHIBITOR OF NF-KAPPA-B ACTIVATION 1,ABIN-1,NEF- COMPND 9 ASSOCIATED FACTOR 1,NAF1,VIRION-ASSOCIATED NUCLEAR SHUTTLING PROTEIN, COMPND 10 MVAN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: TNIP1, ABIN, NAF1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS UBIQUITIN-BINDING DOMAIN, A20-BINDING PROTEIN, SIGNALING PROTEIN, KEYWDS 2 UBIQUITIN EXPDTA X-RAY DIFFRACTION AUTHOR S.RAHIGHI,I.DIKIC,S.WAKATSUKI REVDAT 3 13-MAR-24 6N6R 1 REMARK REVDAT 2 28-AUG-19 6N6R 1 JRNL REVDAT 1 17-JUL-19 6N6R 0 JRNL AUTH L.HERHAUS,H.VAN DEN BEDEM,S.TANG,I.MASLENNIKOV,S.WAKATSUKI, JRNL AUTH 2 I.DIKIC,S.RAHIGHI JRNL TITL MOLECULAR RECOGNITION OF M1-LINKED UBIQUITIN CHAINS BY JRNL TITL 2 NATIVE AND PHOSPHORYLATED UBAN DOMAINS. JRNL REF J.MOL.BIOL. V. 431 3146 2019 JRNL REFN ESSN 1089-8638 JRNL PMID 31247202 JRNL DOI 10.1016/J.JMB.2019.06.012 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 34847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1890 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2545 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : -1.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.982 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3546 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3497 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4749 ; 1.280 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8181 ; 0.903 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 6.080 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;35.873 ;26.136 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 772 ;16.507 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.628 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3803 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 597 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1728 ; 1.125 ; 2.848 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1727 ; 1.126 ; 2.848 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2153 ; 2.039 ; 4.257 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2154 ; 2.039 ; 4.257 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1818 ; 0.963 ; 3.022 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1819 ; 0.963 ; 3.022 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2597 ; 1.828 ; 4.454 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3711 ; 4.309 ;33.033 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3697 ; 4.282 ;32.947 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8324 -36.5581 15.4883 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0360 REMARK 3 T33: 0.1283 T12: -0.0122 REMARK 3 T13: -0.0019 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.8368 L22: 0.2223 REMARK 3 L33: 2.4890 L12: 0.0971 REMARK 3 L13: 0.7957 L23: 0.4946 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: 0.0888 S13: -0.1298 REMARK 3 S21: -0.0310 S22: 0.0149 S23: -0.0750 REMARK 3 S31: 0.0285 S32: -0.0562 S33: -0.0468 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 464 B 531 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5078 -20.9048 32.7816 REMARK 3 T TENSOR REMARK 3 T11: 0.0860 T22: 0.0080 REMARK 3 T33: 0.0725 T12: 0.0181 REMARK 3 T13: 0.0132 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.1428 L22: 0.3406 REMARK 3 L33: 8.2747 L12: -0.0864 REMARK 3 L13: 0.1935 L23: -1.6120 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: -0.0200 S13: 0.0164 REMARK 3 S21: 0.0116 S22: 0.0065 S23: -0.0233 REMARK 3 S31: -0.1654 S32: -0.0333 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 465 D 531 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3813 -20.3827 33.7646 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.0272 REMARK 3 T33: 0.0759 T12: 0.0454 REMARK 3 T13: -0.0061 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.1008 L22: 0.0963 REMARK 3 L33: 8.0329 L12: -0.0674 REMARK 3 L13: -0.2947 L23: 0.3857 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0047 S13: 0.0203 REMARK 3 S21: -0.0196 S22: -0.0137 S23: 0.0421 REMARK 3 S31: 0.0291 S32: 0.0681 S33: 0.0221 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 150 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3131 -2.2406 18.5668 REMARK 3 T TENSOR REMARK 3 T11: 0.0482 T22: 0.0129 REMARK 3 T33: 0.1837 T12: 0.0049 REMARK 3 T13: -0.0225 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.2738 L22: 0.2790 REMARK 3 L33: 2.5936 L12: 0.2742 REMARK 3 L13: -0.6540 L23: -0.6382 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0339 S13: 0.1419 REMARK 3 S21: -0.0224 S22: 0.0396 S23: 0.1462 REMARK 3 S31: -0.0685 S32: -0.0085 S33: -0.0396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6N6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36800 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 67.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.81200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% V/V PEG-MME550, 0.1 M BIS-TRIS PH REMARK 280 6.5, AND 0.05 M CALCIUM CHLORIDE DIHYDRATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.45000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 LEU A 149 REMARK 465 ARG A 150 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 465 LEU B 463 REMARK 465 GLU B 532 REMARK 465 LEU D 463 REMARK 465 ARG D 464 REMARK 465 GLU D 532 REMARK 465 GLY C -4 REMARK 465 SER C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 GLY C 0 REMARK 465 GLY C 151 REMARK 465 GLY C 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 493 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG C 42 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 6N6R A 0 152 UNP P0CG48 UBC_HUMAN 76 228 DBREF 6N6R B 463 532 UNP Q9WUU8 TNIP1_MOUSE 463 532 DBREF 6N6R D 463 532 UNP Q9WUU8 TNIP1_MOUSE 463 532 DBREF 6N6R C 0 152 UNP P0CG48 UBC_HUMAN 76 228 SEQADV 6N6R GLY A -4 UNP P0CG48 EXPRESSION TAG SEQADV 6N6R SER A -3 UNP P0CG48 EXPRESSION TAG SEQADV 6N6R GLY A -2 UNP P0CG48 EXPRESSION TAG SEQADV 6N6R SER A -1 UNP P0CG48 EXPRESSION TAG SEQADV 6N6R GLY C -4 UNP P0CG48 EXPRESSION TAG SEQADV 6N6R SER C -3 UNP P0CG48 EXPRESSION TAG SEQADV 6N6R GLY C -2 UNP P0CG48 EXPRESSION TAG SEQADV 6N6R SER C -1 UNP P0CG48 EXPRESSION TAG SEQRES 1 A 157 GLY SER GLY SER GLY MET GLN ILE PHE VAL LYS THR LEU SEQRES 2 A 157 THR GLY LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP SEQRES 3 A 157 THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU SEQRES 4 A 157 GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY SEQRES 5 A 157 LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN SEQRES 6 A 157 ILE GLN LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU SEQRES 7 A 157 ARG GLY GLY MET GLN ILE PHE VAL LYS THR LEU THR GLY SEQRES 8 A 157 LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE SEQRES 9 A 157 GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE SEQRES 10 A 157 PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN SEQRES 11 A 157 LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN SEQRES 12 A 157 LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 13 A 157 GLY SEQRES 1 B 70 LEU ARG LYS GLN GLU LEU VAL THR GLN ASN GLU LEU LEU SEQRES 2 B 70 LYS GLN GLN VAL LYS ILE PHE GLU GLU ASP PHE GLN ARG SEQRES 3 B 70 GLU ARG SER ASP ARG GLU ARG MET ASN GLU GLU LYS GLU SEQRES 4 B 70 GLU LEU LYS LYS GLN VAL GLU LYS LEU GLN ALA GLN VAL SEQRES 5 B 70 THR LEU THR ASN ALA GLN LEU LYS THR LEU LYS GLU GLU SEQRES 6 B 70 GLU LYS ALA LYS GLU SEQRES 1 D 70 LEU ARG LYS GLN GLU LEU VAL THR GLN ASN GLU LEU LEU SEQRES 2 D 70 LYS GLN GLN VAL LYS ILE PHE GLU GLU ASP PHE GLN ARG SEQRES 3 D 70 GLU ARG SER ASP ARG GLU ARG MET ASN GLU GLU LYS GLU SEQRES 4 D 70 GLU LEU LYS LYS GLN VAL GLU LYS LEU GLN ALA GLN VAL SEQRES 5 D 70 THR LEU THR ASN ALA GLN LEU LYS THR LEU LYS GLU GLU SEQRES 6 D 70 GLU LYS ALA LYS GLU SEQRES 1 C 157 GLY SER GLY SER GLY MET GLN ILE PHE VAL LYS THR LEU SEQRES 2 C 157 THR GLY LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP SEQRES 3 C 157 THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU SEQRES 4 C 157 GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY SEQRES 5 C 157 LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN SEQRES 6 C 157 ILE GLN LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU SEQRES 7 C 157 ARG GLY GLY MET GLN ILE PHE VAL LYS THR LEU THR GLY SEQRES 8 C 157 LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE SEQRES 9 C 157 GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE SEQRES 10 C 157 PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN SEQRES 11 C 157 LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN SEQRES 12 C 157 LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 13 C 157 GLY FORMUL 5 HOH *135(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 THR A 98 GLY A 111 1 14 HELIX 5 AA5 PRO A 113 ASP A 115 5 3 HELIX 6 AA6 LEU A 132 ASN A 136 5 5 HELIX 7 AA7 LYS B 465 ALA B 530 1 66 HELIX 8 AA8 GLN D 466 LYS D 531 1 66 HELIX 9 AA9 THR C 22 GLU C 34 1 13 HELIX 10 AB1 PRO C 37 ASP C 39 5 3 HELIX 11 AB2 THR C 98 GLY C 111 1 14 HELIX 12 AB3 PRO C 113 ASP C 115 5 3 HELIX 13 AB4 LEU C 132 ASN C 136 5 5 SHEET 1 AA1 5 THR A 12 GLU A 16 0 SHEET 2 AA1 5 GLN A 2 LYS A 6 -1 N ILE A 3 O LEU A 15 SHEET 3 AA1 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 THR A 88 VAL A 93 0 SHEET 2 AA2 5 MET A 77 THR A 83 -1 N VAL A 81 O ILE A 89 SHEET 3 AA2 5 THR A 142 LEU A 147 1 O LEU A 145 N LYS A 82 SHEET 4 AA2 5 GLN A 117 PHE A 121 -1 N ILE A 120 O HIS A 144 SHEET 5 AA2 5 LYS A 124 GLN A 125 -1 O LYS A 124 N PHE A 121 SHEET 1 AA3 5 THR C 12 GLU C 16 0 SHEET 2 AA3 5 GLN C 2 THR C 7 -1 N ILE C 3 O LEU C 15 SHEET 3 AA3 5 THR C 66 LEU C 71 1 O LEU C 67 N LYS C 6 SHEET 4 AA3 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA3 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA4 5 THR C 88 VAL C 93 0 SHEET 2 AA4 5 MET C 77 THR C 83 -1 N VAL C 81 O ILE C 89 SHEET 3 AA4 5 THR C 142 LEU C 147 1 O LEU C 143 N PHE C 80 SHEET 4 AA4 5 GLN C 117 PHE C 121 -1 N ILE C 120 O HIS C 144 SHEET 5 AA4 5 LYS C 124 GLN C 125 -1 O LYS C 124 N PHE C 121 CRYST1 52.900 88.180 105.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018904 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009443 0.00000