HEADER BIOSYNTHETIC PROTEIN 01-DEC-18 6N9A TITLE CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA THREONYLCARBAMOYLADENOSINE TITLE 2 BIOSYNTHESIS COMPLEX TSAB2D2E2 BOUND TO ATP AND CARBOXY-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN TSAB; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: T(6)A37 THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN COMPND 5 TSAB; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE; COMPND 9 CHAIN: D; COMPND 10 SYNONYM: N6-L-THREONYLCARBAMOYLADENINE SYNTHASE,T(6)A SYNTHASE,T(6) COMPND 11 A37 THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN TSAD,TRNA COMPND 12 THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN TSAD; COMPND 13 EC: 2.3.1.234; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN TSAE; COMPND 17 CHAIN: E; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TSAB, TM_0874, TMARI_0876; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 9 ORGANISM_TAXID: 2336; SOURCE 10 GENE: TSAD, GCP, TM_0145; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 15 ORGANISM_TAXID: 2336; SOURCE 16 GENE: TM_1632; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THREONYLCARBAMOYL TRANSFER COMPLEX, T6A BIOSYNTHESIS, TRNA KEYWDS 2 MODIFICATION, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SWAIRJO,B.STEC REVDAT 5 11-OCT-23 6N9A 1 LINK REVDAT 4 01-JAN-20 6N9A 1 REMARK REVDAT 3 17-JUL-19 6N9A 1 JRNL REVDAT 2 05-JUN-19 6N9A 1 JRNL REVDAT 1 22-MAY-19 6N9A 0 JRNL AUTH A.LUTHRA,N.PARANAGAMA,W.SWINEHART,S.BAYOOZ,P.PHAN,V.QUACH, JRNL AUTH 2 J.M.SCHIFFER,B.STEC,D.IWATA-REUYL,M.A.SWAIRJO JRNL TITL CONFORMATIONAL COMMUNICATION MEDIATES THE RESET STEP IN T6A JRNL TITL 2 BIOSYNTHESIS. JRNL REF NUCLEIC ACIDS RES. V. 47 6551 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31114923 JRNL DOI 10.1093/NAR/GKZ439 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 31308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1787 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1500 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5490 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.66000 REMARK 3 B22 (A**2) : -1.66000 REMARK 3 B33 (A**2) : 5.38000 REMARK 3 B12 (A**2) : -0.83000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.429 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5696 ; 0.003 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 5383 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7706 ; 0.783 ; 1.678 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12596 ; 0.770 ; 1.649 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 699 ; 6.934 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;33.739 ;22.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1023 ;17.962 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.691 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 720 ; 0.040 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6225 ; 0.001 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 983 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2805 ;10.640 ; 7.371 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2804 ;10.643 ; 7.369 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3501 ;13.933 ;11.070 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3502 ;13.932 ;11.073 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2891 ;13.315 ; 8.289 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2891 ;13.305 ; 8.290 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4206 ;16.523 ;12.102 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6119 ;17.051 ;87.247 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6111 ;17.047 ;87.236 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11078 ; 2.686 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 91 ;47.744 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 11048 ;43.476 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6N9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.19499 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36821 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 107.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 1.88600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2A6A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 UL SAMPLE SOLUTION CONTAINING 3.1 REMARK 280 MG/ML PROTEIN, 50 MM TRIS (PH 7.5), 50 MM NACL, 1 MM ATP AND 0.1 REMARK 280 MM MGCL2 WITH 2 UL RESERVOIR SOLUTION CONTAINING 8% POLYETHYLENE REMARK 280 GLYCOL (PEG) 400, 100 MM KCL, 50 MM MES (PH 6.0) AND 0.8 MM REMARK 280 MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.67833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.35667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.35667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.67833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -168.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.67833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR E 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 10 -90.83 -146.69 REMARK 500 ALA B 113 -133.76 -93.68 REMARK 500 LYS B 115 127.91 -34.18 REMARK 500 ASP B 126 -101.79 -142.00 REMARK 500 LYS B 127 -70.43 -65.36 REMARK 500 LEU B 129 127.72 -171.73 REMARK 500 ASP B 158 -47.12 82.74 REMARK 500 GLN B 192 -41.23 -23.94 REMARK 500 GLU B 201 -96.10 -127.67 REMARK 500 LYS B 202 -126.93 -153.54 REMARK 500 LYS B 203 70.53 -107.91 REMARK 500 ARG B 205 62.82 -163.69 REMARK 500 THR D 8 45.36 -147.71 REMARK 500 CYS D 10 -104.82 -141.20 REMARK 500 LYS D 22 -55.16 -143.49 REMARK 500 LYS D 38 69.87 -168.21 REMARK 500 PRO D 44 175.19 -41.60 REMARK 500 VAL D 133 71.99 -152.68 REMARK 500 SER D 134 -154.51 -101.98 REMARK 500 TYR D 147 14.39 90.33 REMARK 500 ASP D 157 -101.60 -159.25 REMARK 500 LYS D 187 30.44 -97.12 REMARK 500 PRO D 198 99.12 -51.57 REMARK 500 PRO D 289 158.47 -47.40 REMARK 500 LEU E 37 116.00 -36.36 REMARK 500 LEU E 66 -48.00 83.33 REMARK 500 ASP E 86 -152.74 -78.24 REMARK 500 LEU E 92 -74.90 -105.28 REMARK 500 ASP E 130 -157.88 -142.85 REMARK 500 SER E 132 17.19 -140.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 109 NE2 REMARK 620 2 HIS D 113 NE2 97.2 REMARK 620 3 HIS D 137 NE2 105.3 98.8 REMARK 620 4 ASP D 296 OD1 91.1 91.4 159.3 REMARK 620 5 HOH D 503 O 93.3 168.6 82.8 83.8 REMARK 620 6 HOH D 535 O 165.2 96.0 79.3 81.8 73.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR E 42 OG1 REMARK 620 2 GLU E 108 OE1 86.4 REMARK 620 3 ATP E 201 O3G 164.3 102.4 REMARK 620 4 ATP E 201 O2B 83.3 110.1 81.5 REMARK 620 5 HOH E 304 O 88.4 84.1 105.3 162.9 REMARK 620 6 HOH E 308 O 80.5 165.1 92.0 75.4 88.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AE3 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KG4 D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP D 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG E 202 DBREF 6N9A B 2 206 UNP Q9WZX7 TSAB_THEMA 2 206 DBREF 6N9A D 1 327 UNP Q9WXZ2 TSAD_THEMA 1 327 DBREF 6N9A E 2 161 UNP Q9X1W7 Q9X1W7_THEMA 2 161 SEQADV 6N9A GLY B -4 UNP Q9WZX7 EXPRESSION TAG SEQADV 6N9A SER B -3 UNP Q9WZX7 EXPRESSION TAG SEQADV 6N9A HIS B -2 UNP Q9WZX7 EXPRESSION TAG SEQADV 6N9A MET B -1 UNP Q9WZX7 EXPRESSION TAG SEQADV 6N9A ALA B 0 UNP Q9WZX7 EXPRESSION TAG SEQADV 6N9A SER B 1 UNP Q9WZX7 EXPRESSION TAG SEQADV 6N9A GLU D -2 UNP Q9WXZ2 EXPRESSION TAG SEQADV 6N9A GLY D -1 UNP Q9WXZ2 EXPRESSION TAG SEQADV 6N9A ARG D 0 UNP Q9WXZ2 EXPRESSION TAG SEQADV 6N9A ALA E 0 UNP Q9X1W7 EXPRESSION TAG SEQADV 6N9A SER E 1 UNP Q9X1W7 EXPRESSION TAG SEQRES 1 B 211 GLY SER HIS MET ALA SER ASN VAL LEU ALA LEU ASP THR SEQRES 2 B 211 SER GLN ARG ILE ARG ILE GLY LEU ARG LYS GLY GLU ASP SEQRES 3 B 211 LEU PHE GLU ILE SER TYR THR GLY GLU LYS LYS HIS ALA SEQRES 4 B 211 GLU ILE LEU PRO VAL VAL VAL LYS LYS LEU LEU ASP GLU SEQRES 5 B 211 LEU ASP LEU LYS VAL LYS ASP LEU ASP VAL VAL GLY VAL SEQRES 6 B 211 GLY ILE GLY PRO GLY GLY LEU THR GLY LEU ARG VAL GLY SEQRES 7 B 211 ILE ALA THR VAL VAL GLY LEU VAL SER PRO TYR ASP ILE SEQRES 8 B 211 PRO VAL ALA PRO LEU ASN SER PHE GLU MET THR ALA LYS SEQRES 9 B 211 SER CYS PRO ALA ASP GLY VAL VAL LEU VAL ALA ARG ARG SEQRES 10 B 211 ALA ARG LYS GLY TYR HIS TYR CYS ALA VAL TYR LEU LYS SEQRES 11 B 211 ASP LYS GLY LEU ASN PRO LEU LYS GLU PRO SER VAL VAL SEQRES 12 B 211 SER ASP GLU GLU LEU GLU GLU ILE THR LYS GLU PHE SER SEQRES 13 B 211 PRO LYS ILE VAL LEU LYS ASP ASP LEU LEU ILE SER PRO SEQRES 14 B 211 ALA VAL LEU VAL GLU GLU SER GLU ARG LEU PHE ARG GLU SEQRES 15 B 211 LYS LYS THR ILE HIS TYR TYR GLU ILE GLU PRO LEU TYR SEQRES 16 B 211 LEU GLN LYS SER ILE ALA GLU LEU ASN TRP GLU LYS LYS SEQRES 17 B 211 LYS ARG GLY SEQRES 1 D 330 GLU GLY ARG MET ARG VAL LEU GLY ILE GLU THR SER CYS SEQRES 2 D 330 ASP GLU THR ALA VAL ALA VAL LEU ASP ASP GLY LYS ASN SEQRES 3 D 330 VAL VAL VAL ASN PHE THR VAL SER GLN ILE GLU VAL HIS SEQRES 4 D 330 GLN LYS PHE GLY GLY VAL VAL PRO GLU VAL ALA ALA ARG SEQRES 5 D 330 HIS HIS LEU LYS ASN LEU PRO ILE LEU LEU LYS LYS ALA SEQRES 6 D 330 PHE GLU LYS VAL PRO PRO GLU THR VAL ASP VAL VAL ALA SEQRES 7 D 330 ALA THR TYR GLY PRO GLY LEU ILE GLY ALA LEU LEU VAL SEQRES 8 D 330 GLY LEU SER ALA ALA LYS GLY LEU ALA ILE SER LEU GLU SEQRES 9 D 330 LYS PRO PHE VAL GLY VAL ASN HIS VAL GLU ALA HIS VAL SEQRES 10 D 330 GLN ALA VAL PHE LEU ALA ASN PRO ASP LEU LYS PRO PRO SEQRES 11 D 330 LEU VAL VAL LEU MET VAL SER GLY GLY HIS THR GLN LEU SEQRES 12 D 330 MET LYS VAL ASP GLU ASP TYR SER MET GLU VAL LEU GLY SEQRES 13 D 330 GLU THR LEU ASP ASP SER ALA GLY GLU ALA PHE ASP LYS SEQRES 14 D 330 VAL ALA ARG LEU LEU GLY LEU GLY TYR PRO GLY GLY PRO SEQRES 15 D 330 VAL ILE ASP ARG VAL ALA LYS LYS GLY ASP PRO GLU LYS SEQRES 16 D 330 TYR SER PHE PRO ARG PRO MET LEU ASP ASP ASP SER TYR SEQRES 17 D 330 ASN PHE SER PHE ALA GLY LEU LYS THR SER VAL LEU TYR SEQRES 18 D 330 PHE LEU GLN ARG GLU LYS GLY TYR LYS VAL GLU ASP VAL SEQRES 19 D 330 ALA ALA SER PHE GLN LYS ALA VAL VAL ASP ILE LEU VAL SEQRES 20 D 330 GLU LYS THR PHE ARG LEU ALA ARG ASN LEU GLY ILE ARG SEQRES 21 D 330 LYS ILE ALA PHE VAL GLY GLY VAL ALA ALA ASN SER MET SEQRES 22 D 330 LEU ARG GLU GLU VAL ARG LYS ARG ALA GLU ARG TRP ASN SEQRES 23 D 330 TYR GLU VAL PHE PHE PRO PRO LEU GLU LEU CYS THR ASP SEQRES 24 D 330 ASN ALA LEU MET VAL ALA LYS ALA GLY TYR GLU LYS ALA SEQRES 25 D 330 LYS ARG GLY MET PHE SER PRO LEU SER LEU ASN ALA ASP SEQRES 26 D 330 PRO ASN LEU ASN VAL SEQRES 1 E 162 ALA SER ARG HIS LEU ARG PHE GLU ASN LEU THR GLU GLU SEQRES 2 E 162 GLN LEU LYS ARG LEU ALA LYS ILE LEU THR GLU ASN LEU SEQRES 3 E 162 LYS GLY GLY GLU VAL VAL ILE LEU SER GLY ASN LEU GLY SEQRES 4 E 162 ALA GLY LYS THR THR PHE VAL LYS GLY MET ILE ARG ALA SEQRES 5 E 162 ILE GLY LEU ASP GLU LYS MET VAL LYS SER PRO THR PHE SEQRES 6 E 162 THR LEU MET ASN VAL TYR PRO GLY LEU LYS THR ILE TYR SEQRES 7 E 162 HIS LEU ASP LEU TYR ARG LEU GLN ASP THR ASP PHE LEU SEQRES 8 E 162 SER LEU ASP VAL GLU ASP ILE LEU GLU ASP GLU ASP GLY SEQRES 9 E 162 ILE MET VAL VAL GLU TRP GLY ASP LEU PHE ASP GLY PHE SEQRES 10 E 162 TRP PRO GLU ASP SER ILE LYS VAL LYS ILE GLU ILE ALA SEQRES 11 E 162 ASP GLU SER HIS ARG ASN VAL GLU ILE LEU ILE PRO GLU SEQRES 12 E 162 GLU VAL ASN PHE LEU VAL GLU LYS ILE GLU ARG TYR ARG SEQRES 13 E 162 LYS GLU LEU GLN ASN THR HET PGE B 301 10 HET AE3 B 302 9 HET KG4 D 401 26 HET ZN D 402 1 HET ADP D 403 27 HET ATP E 201 31 HET MG E 202 1 HETNAM PGE TRIETHYLENE GLYCOL HETNAM AE3 2-(2-ETHOXYETHOXY)ETHANOL HETNAM KG4 5'-O-[(R)-(CARBOXYOXY)(HYDROXY)PHOSPHORYL]ADENOSINE HETNAM ZN ZINC ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 PGE C6 H14 O4 FORMUL 5 AE3 C6 H14 O3 FORMUL 6 KG4 C11 H14 N5 O9 P FORMUL 7 ZN ZN 2+ FORMUL 8 ADP C10 H15 N5 O10 P2 FORMUL 9 ATP C10 H16 N5 O13 P3 FORMUL 10 MG MG 2+ FORMUL 11 HOH *160(H2 O) HELIX 1 AA1 LYS B 32 LEU B 48 1 17 HELIX 2 AA2 LYS B 51 LEU B 55 5 5 HELIX 3 AA3 GLY B 66 SER B 82 1 17 HELIX 4 AA4 ASN B 92 SER B 100 1 9 HELIX 5 AA5 ASP B 140 PHE B 150 1 11 HELIX 6 AA6 SER B 163 GLU B 177 1 15 HELIX 7 AA7 TYR B 190 LYS B 193 5 4 HELIX 8 AA8 SER B 194 ASN B 199 1 6 HELIX 9 AA9 VAL D 30 HIS D 36 1 7 HELIX 10 AB1 HIS D 50 VAL D 66 1 17 HELIX 11 AB2 PRO D 67 VAL D 71 5 5 HELIX 12 AB3 LEU D 82 GLU D 101 1 20 HELIX 13 AB4 HIS D 109 ASN D 121 1 13 HELIX 14 AB5 SER D 159 LEU D 171 1 13 HELIX 15 AB6 PRO D 176 LYS D 187 1 12 HELIX 16 AB7 PHE D 209 GLU D 223 1 15 HELIX 17 AB8 LYS D 227 GLY D 255 1 29 HELIX 18 AB9 GLY D 263 ALA D 267 5 5 HELIX 19 AC1 ASN D 268 ASN D 283 1 16 HELIX 20 AC2 PRO D 290 THR D 295 1 6 HELIX 21 AC3 ALA D 298 ARG D 311 1 14 HELIX 22 AC4 THR E 10 ASN E 24 1 15 HELIX 23 AC5 GLY E 40 ILE E 49 1 10 HELIX 24 AC6 ARG E 50 GLY E 53 5 4 HELIX 25 AC7 ASP E 55 VAL E 59 5 5 HELIX 26 AC8 THR E 87 LEU E 92 1 6 HELIX 27 AC9 LEU E 92 LEU E 98 1 7 HELIX 28 AD1 GLY E 110 TRP E 117 5 8 HELIX 29 AD2 GLU E 143 ASN E 145 5 3 HELIX 30 AD3 PHE E 146 ARG E 153 1 8 HELIX 31 AD4 TYR E 154 GLN E 159 5 6 SHEET 1 AA1 5 ASP B 21 TYR B 27 0 SHEET 2 AA1 5 ILE B 12 LYS B 18 -1 N LYS B 18 O ASP B 21 SHEET 3 AA1 5 ASN B 2 ASP B 7 -1 N ALA B 5 O GLY B 15 SHEET 4 AA1 5 VAL B 57 GLY B 61 1 O GLY B 59 N LEU B 4 SHEET 5 AA1 5 VAL B 88 LEU B 91 1 O LEU B 91 N VAL B 60 SHEET 1 AA2 4 LEU B 129 SER B 139 0 SHEET 2 AA2 4 TYR B 117 LYS B 125 -1 N LEU B 124 O ASN B 130 SHEET 3 AA2 4 GLY B 105 ARG B 112 -1 N GLY B 105 O LYS B 125 SHEET 4 AA2 4 ILE B 154 LYS B 157 1 O LEU B 156 N ALA B 110 SHEET 1 AA3 5 ASN D 23 THR D 29 0 SHEET 2 AA3 5 ALA D 14 ASP D 19 -1 N VAL D 15 O PHE D 28 SHEET 3 AA3 5 ARG D 2 GLU D 7 -1 N VAL D 3 O LEU D 18 SHEET 4 AA3 5 VAL D 73 GLY D 79 1 O ALA D 75 N LEU D 4 SHEET 5 AA3 5 PHE D 104 ASN D 108 1 O VAL D 107 N ALA D 76 SHEET 1 AA4 5 MET D 149 GLU D 154 0 SHEET 2 AA4 5 THR D 138 VAL D 143 -1 N LEU D 140 O GLY D 153 SHEET 3 AA4 5 LEU D 128 VAL D 133 -1 N MET D 132 O GLN D 139 SHEET 4 AA4 5 LYS D 258 VAL D 262 1 O VAL D 262 N VAL D 133 SHEET 5 AA4 5 GLU D 285 PHE D 287 1 O PHE D 287 N PHE D 261 SHEET 1 AA5 7 SER E 1 LEU E 9 0 SHEET 2 AA5 7 HIS E 133 PRO E 141 -1 O ARG E 134 N LEU E 9 SHEET 3 AA5 7 ILE E 122 ASP E 130 -1 N LYS E 125 O GLU E 137 SHEET 4 AA5 7 GLU E 29 SER E 34 1 N SER E 34 O VAL E 124 SHEET 5 AA5 7 ILE E 104 GLU E 108 1 O VAL E 107 N VAL E 31 SHEET 6 AA5 7 THR E 75 ASP E 80 1 N LEU E 79 O GLU E 108 SHEET 7 AA5 7 MET E 67 PRO E 71 -1 N TYR E 70 O ILE E 76 LINK NE2 HIS D 109 ZN ZN D 402 1555 1555 2.06 LINK NE2 HIS D 113 ZN ZN D 402 1555 1555 1.96 LINK NE2 HIS D 137 ZN ZN D 402 1555 1555 2.16 LINK OD1 ASP D 296 ZN ZN D 402 1555 1555 2.09 LINK ZN ZN D 402 O HOH D 503 1555 1555 1.83 LINK ZN ZN D 402 O HOH D 535 1555 1555 2.28 LINK OG1 THR E 42 MG MG E 202 1555 1555 2.22 LINK OE1 GLU E 108 MG MG E 202 1555 1555 2.04 LINK O3G ATP E 201 MG MG E 202 1555 1555 1.93 LINK O2B ATP E 201 MG MG E 202 1555 1555 2.27 LINK MG MG E 202 O HOH E 304 1555 1555 2.07 LINK MG MG E 202 O HOH E 308 1555 1555 2.05 CISPEP 1 GLY B 63 PRO B 64 0 0.37 CISPEP 2 GLY D 79 PRO D 80 0 -5.21 CISPEP 3 PRO D 126 PRO D 127 0 9.08 CISPEP 4 TYR D 175 PRO D 176 0 7.51 SITE 1 AC1 3 ASP B 46 GLU B 47 HOH B 418 SITE 1 AC2 2 LYS B 31 HOH B 425 SITE 1 AC3 16 SER D 134 GLY D 135 GLY D 136 GLY D 161 SITE 2 AC3 16 PHE D 164 ASP D 165 GLY D 178 PRO D 179 SITE 3 AC3 16 ASP D 182 GLY D 264 VAL D 265 ASN D 268 SITE 4 AC3 16 THR D 295 HOH D 531 HOH D 538 PHE E 64 SITE 1 AC4 6 HIS D 109 HIS D 113 HIS D 137 ASP D 296 SITE 2 AC4 6 HOH D 503 HOH D 535 SITE 1 AC5 5 PHE D 248 ARG D 252 TRP D 282 TYR D 284 SITE 2 AC5 5 HOH E 323 SITE 1 AC6 25 LYS D 166 GLY D 211 LYS D 213 THR D 214 SITE 2 AC6 25 LEU E 9 THR E 10 GLU E 11 LEU E 14 SITE 3 AC6 25 LEU E 37 GLY E 38 ALA E 39 GLY E 40 SITE 4 AC6 25 LYS E 41 THR E 42 THR E 43 GLU E 108 SITE 5 AC6 25 TRP E 109 SER E 132 HIS E 133 ARG E 134 SITE 6 AC6 25 MG E 202 HOH E 302 HOH E 303 HOH E 308 SITE 7 AC6 25 HOH E 320 SITE 1 AC7 5 THR E 42 GLU E 108 ATP E 201 HOH E 304 SITE 2 AC7 5 HOH E 308 CRYST1 124.053 124.053 119.035 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008061 0.004654 0.000000 0.00000 SCALE2 0.000000 0.009308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008401 0.00000