HEADER HYDROLASE/HYDROLASE INHIBITOR 03-DEC-18 6N9D TITLE COMPLEX OF TISSUE INHIBITOR OF METALLOPROTEINASES-1 (TIMP-1) MUTANT TITLE 2 (L34G/L133P/L151C/G154A) WITH MATRIX METALLOPROTEINASE-3 CATALYTIC TITLE 3 DOMAIN (MMP-3CD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMELYSIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SL-1,MATRIX METALLOPROTEINASE-3,MMP-3,TRANSIN-1; COMPND 5 EC: 3.4.24.17; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: METALLOPROTEINASE INHIBITOR 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: ERYTHROID-POTENTIATING ACTIVITY,EPA,FIBROBLAST COLLAGENASE COMPND 11 INHIBITOR,COLLAGENASE INHIBITOR,TISSUE INHIBITOR OF COMPND 12 METALLOPROTEINASES 1,TIMP-1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP3, STMY1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: TIMP1, CLGI, TIMP; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS TISSUE INHIBITOR OF METALLOPROTEINASES, MATRIX METALLOPROTEINASE, KEYWDS 2 HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.RAEESZADEH-SARMAZDEH,E.S.RADISKY,B.SANKARAN REVDAT 4 11-OCT-23 6N9D 1 REMARK LINK REVDAT 3 04-DEC-19 6N9D 1 REMARK REVDAT 2 26-JUN-19 6N9D 1 JRNL REVDAT 1 15-MAY-19 6N9D 0 JRNL AUTH M.RAEESZADEH-SARMAZDEH,K.A.GREENE,B.SANKARAN,G.P.DOWNEY, JRNL AUTH 2 D.C.RADISKY,E.S.RADISKY JRNL TITL DIRECTED EVOLUTION OF THE METALLOPROTEINASE INHIBITOR TIMP-1 JRNL TITL 2 REVEALS THAT ITS N- AND C-TERMINAL DOMAINS COOPERATE IN JRNL TITL 3 MATRIX METALLOPROTEINASE RECOGNITION. JRNL REF J.BIOL.CHEM. V. 294 9476 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31040180 JRNL DOI 10.1074/JBC.RA119.008321 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.350 REMARK 3 FREE R VALUE TEST SET COUNT : 1039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9963 - 5.1052 1.00 2069 162 0.1680 0.2409 REMARK 3 2 5.1052 - 4.0531 1.00 1904 151 0.1412 0.2140 REMARK 3 3 4.0531 - 3.5410 1.00 1857 148 0.1648 0.2305 REMARK 3 4 3.5410 - 3.2174 1.00 1840 146 0.2120 0.3155 REMARK 3 5 3.2174 - 2.9868 1.00 1834 146 0.2207 0.3261 REMARK 3 6 2.9868 - 2.8107 1.00 1799 143 0.2549 0.2659 REMARK 3 7 2.8107 - 2.6700 0.99 1798 143 0.3221 0.4075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2706 REMARK 3 ANGLE : 1.304 3680 REMARK 3 CHIRALITY : 0.049 402 REMARK 3 PLANARITY : 0.007 476 REMARK 3 DIHEDRAL : 16.368 949 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4035 27.1386 10.2626 REMARK 3 T TENSOR REMARK 3 T11: 0.3339 T22: 0.5127 REMARK 3 T33: 0.5186 T12: 0.0236 REMARK 3 T13: -0.0328 T23: -0.0911 REMARK 3 L TENSOR REMARK 3 L11: 3.6401 L22: 5.9231 REMARK 3 L33: 4.5513 L12: 2.0652 REMARK 3 L13: 0.1833 L23: -2.1618 REMARK 3 S TENSOR REMARK 3 S11: 0.1169 S12: -0.2328 S13: -0.1394 REMARK 3 S21: 0.2511 S22: -0.3101 S23: -1.0575 REMARK 3 S31: 0.1399 S32: 0.6620 S33: 0.1443 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7458 20.6886 13.7329 REMARK 3 T TENSOR REMARK 3 T11: 0.5081 T22: 0.2821 REMARK 3 T33: 0.3635 T12: -0.0444 REMARK 3 T13: -0.0433 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 4.0548 L22: 2.7607 REMARK 3 L33: 4.5577 L12: 0.1535 REMARK 3 L13: -0.1441 L23: 0.5903 REMARK 3 S TENSOR REMARK 3 S11: 0.0761 S12: -0.0320 S13: -0.7159 REMARK 3 S21: 0.4231 S22: -0.3094 S23: -0.2601 REMARK 3 S31: 0.8346 S32: -0.2583 S33: 0.2354 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1675 29.5753 0.5633 REMARK 3 T TENSOR REMARK 3 T11: 0.3632 T22: 0.4182 REMARK 3 T33: 0.4755 T12: 0.0455 REMARK 3 T13: -0.0582 T23: -0.1341 REMARK 3 L TENSOR REMARK 3 L11: 5.8107 L22: 2.6802 REMARK 3 L33: 3.0647 L12: 2.8080 REMARK 3 L13: -0.5366 L23: -2.1117 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: 0.6196 S13: 0.0606 REMARK 3 S21: -0.2623 S22: -0.0039 S23: 0.7312 REMARK 3 S31: 0.2527 S32: -0.3108 S33: 0.0455 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8736 23.6341 20.7732 REMARK 3 T TENSOR REMARK 3 T11: 0.5745 T22: 0.3144 REMARK 3 T33: 0.3100 T12: -0.0607 REMARK 3 T13: 0.0442 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 5.3852 L22: 3.3491 REMARK 3 L33: 4.1670 L12: 1.4013 REMARK 3 L13: 0.2489 L23: 1.1305 REMARK 3 S TENSOR REMARK 3 S11: 0.1652 S12: -0.3803 S13: 0.4206 REMARK 3 S21: 0.7122 S22: -0.2779 S23: 0.2628 REMARK 3 S31: 0.3489 S32: -0.4264 S33: 0.0686 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7266 9.3658 8.1272 REMARK 3 T TENSOR REMARK 3 T11: 0.4813 T22: 0.3146 REMARK 3 T33: 0.3257 T12: -0.0965 REMARK 3 T13: 0.0211 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 1.0151 L22: 5.2375 REMARK 3 L33: 3.3935 L12: -1.1303 REMARK 3 L13: -0.4156 L23: 3.3570 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: 0.2083 S13: 0.0059 REMARK 3 S21: 0.2424 S22: -0.0611 S23: 0.0467 REMARK 3 S31: 0.3439 S32: 0.0098 S33: -0.0069 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14162 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 43.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.40 REMARK 200 R MERGE (I) : 0.24690 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1UEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE: HCL, PH 6.5 18 % (W/V) PEG 8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 213.00800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.50400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 159.75600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.25200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 266.26000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 213.00800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 106.50400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.25200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 159.75600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 266.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 220 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 83 REMARK 465 ARG A 84 REMARK 465 THR A 85 REMARK 465 PHE A 86 REMARK 465 GLY B 53 REMARK 465 ASP B 54 REMARK 465 ALA B 55 REMARK 465 ALA B 56 REMARK 465 ARG B 180 REMARK 465 SER B 181 REMARK 465 GLN B 182 REMARK 465 ILE B 183 REMARK 465 ALA B 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 233 CD NE CZ NH1 NH2 REMARK 470 ARG B 59 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 LYS B 157 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 31 CG CD OE1 NE2 REMARK 480 GLU B 126 CG CD OE1 OE2 REMARK 480 GLU B 156 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 167 OG SER B 68 2.03 REMARK 500 O ASN B 78 O HOH B 201 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 52 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 110 38.55 -75.12 REMARK 500 ASP A 111 -48.72 -156.73 REMARK 500 ARG A 149 -107.07 43.44 REMARK 500 HIS A 151 -50.55 72.60 REMARK 500 ASN A 162 -107.74 52.05 REMARK 500 ASP A 189 -147.10 -98.38 REMARK 500 LEU A 229 -33.07 79.83 REMARK 500 ASN B 30 75.60 49.20 REMARK 500 CYS B 70 31.65 81.61 REMARK 500 ASN B 78 -111.54 65.24 REMARK 500 LYS B 118 -62.43 -133.72 REMARK 500 PRO B 133 -88.69 -71.02 REMARK 500 GLN B 153 50.78 -101.75 REMARK 500 HIS B 163 -13.56 -140.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 150 HIS A 151 139.41 REMARK 500 HIS B 77 ASN B 78 136.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD1 REMARK 620 2 ASP A 107 OD2 52.4 REMARK 620 3 ASP A 182 O 177.1 125.3 REMARK 620 4 ASP A 182 OD1 105.9 88.1 71.8 REMARK 620 5 GLU A 184 O 109.1 61.3 69.6 93.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 O REMARK 620 2 GLY A 173 O 164.7 REMARK 620 3 ASN A 175 O 93.5 81.5 REMARK 620 4 ASP A 177 OD1 86.2 78.8 81.7 REMARK 620 5 HOH A 406 O 111.2 70.1 149.9 83.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 ASP A 153 OD2 115.5 REMARK 620 3 HIS A 166 NE2 133.4 107.6 REMARK 620 4 HIS A 179 ND1 80.4 100.2 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 OD1 REMARK 620 2 GLY A 159 O 85.5 REMARK 620 3 GLY A 161 O 82.9 99.2 REMARK 620 4 VAL A 163 O 92.4 171.3 88.9 REMARK 620 5 ASP A 181 OD2 93.6 77.7 175.5 94.0 REMARK 620 6 GLU A 184 OE2 175.2 95.6 101.6 85.9 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 NE2 REMARK 620 2 HIS A 205 NE2 90.4 REMARK 620 3 HIS A 211 NE2 117.9 93.7 REMARK 620 4 CYS B 1 N 110.6 91.4 131.1 REMARK 620 5 CYS B 1 O 82.0 164.3 102.0 78.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 305 DBREF 6N9D A 83 247 UNP P08254 MMP3_HUMAN 100 264 DBREF 6N9D B 1 184 UNP P01033 TIMP1_HUMAN 24 207 SEQADV 6N9D GLY B 34 UNP P01033 LEU 57 ENGINEERED MUTATION SEQADV 6N9D PRO B 133 UNP P01033 LEU 156 ENGINEERED MUTATION SEQADV 6N9D CYS B 151 UNP P01033 LEU 174 ENGINEERED MUTATION SEQADV 6N9D ALA B 154 UNP P01033 GLY 177 ENGINEERED MUTATION SEQRES 1 A 165 PHE ARG THR PHE PRO GLY ILE PRO LYS TRP ARG LYS THR SEQRES 2 A 165 HIS LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP LEU SEQRES 3 A 165 PRO LYS ASP ALA VAL ASP SER ALA VAL GLU LYS ALA LEU SEQRES 4 A 165 LYS VAL TRP GLU GLU VAL THR PRO LEU THR PHE SER ARG SEQRES 5 A 165 LEU TYR GLU GLY GLU ALA ASP ILE MET ILE SER PHE ALA SEQRES 6 A 165 VAL ARG GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 165 GLY ASN VAL LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY SEQRES 8 A 165 ILE ASN GLY ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP SEQRES 9 A 165 THR LYS ASP THR THR GLY THR ASN LEU PHE LEU VAL ALA SEQRES 10 A 165 ALA HIS GLU ILE GLY HIS SER LEU GLY LEU PHE HIS SER SEQRES 11 A 165 ALA ASN THR GLU ALA LEU MET TYR PRO LEU TYR HIS SER SEQRES 12 A 165 LEU THR ASP LEU THR ARG PHE ARG LEU SER GLN ASP ASP SEQRES 13 A 165 ILE ASN GLY ILE GLN SER LEU TYR GLY SEQRES 1 B 184 CYS THR CYS VAL PRO PRO HIS PRO GLN THR ALA PHE CYS SEQRES 2 B 184 ASN SER ASP LEU VAL ILE ARG ALA LYS PHE VAL GLY THR SEQRES 3 B 184 PRO GLU VAL ASN GLN THR THR GLY TYR GLN ARG TYR GLU SEQRES 4 B 184 ILE LYS MET THR LYS MET TYR LYS GLY PHE GLN ALA LEU SEQRES 5 B 184 GLY ASP ALA ALA ASP ILE ARG PHE VAL TYR THR PRO ALA SEQRES 6 B 184 MET GLU SER VAL CYS GLY TYR PHE HIS ARG SER HIS ASN SEQRES 7 B 184 ARG SER GLU GLU PHE LEU ILE ALA GLY LYS LEU GLN ASP SEQRES 8 B 184 GLY LEU LEU HIS ILE THR THR CYS SER PHE VAL ALA PRO SEQRES 9 B 184 TRP ASN SER LEU SER LEU ALA GLN ARG ARG GLY PHE THR SEQRES 10 B 184 LYS THR TYR THR VAL GLY CYS GLU GLU CYS THR VAL PHE SEQRES 11 B 184 PRO CYS PRO SER ILE PRO CYS LYS LEU GLN SER GLY THR SEQRES 12 B 184 HIS CYS LEU TRP THR ASP GLN CYS LEU GLN ALA SER GLU SEQRES 13 B 184 LYS GLY PHE GLN SER ARG HIS LEU ALA CYS LEU PRO ARG SEQRES 14 B 184 GLU PRO GLY LEU CYS THR TRP GLN SER LEU ARG SER GLN SEQRES 15 B 184 ILE ALA HET CA A 301 1 HET CA A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET CA A 305 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 3 CA 3(CA 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 8 HOH *46(H2 O) HELIX 1 AA1 ASP A 111 GLU A 126 1 16 HELIX 2 AA2 LEU A 195 GLY A 208 1 14 HELIX 3 AA3 SER A 235 GLY A 247 1 13 HELIX 4 AA4 HIS B 7 SER B 15 1 9 HELIX 5 AA5 MET B 66 CYS B 70 5 5 HELIX 6 AA6 ASN B 106 LEU B 108 5 3 HELIX 7 AA7 SER B 109 THR B 117 1 9 HELIX 8 AA8 TYR B 120 GLU B 125 1 6 HELIX 9 AA9 GLN B 153 GLY B 158 1 6 HELIX 10 AB1 GLY B 158 HIS B 163 1 6 SHEET 1 AA1 6 THR A 131 ARG A 134 0 SHEET 2 AA1 6 HIS A 96 ILE A 101 1 N LEU A 97 O THR A 131 SHEET 3 AA1 6 ILE A 142 ALA A 147 1 O ILE A 144 N ARG A 100 SHEET 4 AA1 6 ALA A 178 ASP A 181 1 O PHE A 180 N ALA A 147 SHEET 5 AA1 6 ASN A 162 ALA A 167 -1 N HIS A 166 O HIS A 179 SHEET 6 AA1 6 THR B 2 VAL B 4 -1 O THR B 2 N LEU A 164 SHEET 1 AA2 2 TRP A 186 THR A 187 0 SHEET 2 AA2 2 THR A 193 ASN A 194 1 O THR A 193 N THR A 187 SHEET 1 AA3 7 PHE B 101 PRO B 104 0 SHEET 2 AA3 7 PHE B 83 GLN B 90 -1 N LEU B 84 O ALA B 103 SHEET 3 AA3 7 LEU B 93 HIS B 95 -1 O HIS B 95 N LYS B 88 SHEET 4 AA3 7 PHE B 60 PRO B 64 1 N TYR B 62 O LEU B 94 SHEET 5 AA3 7 TYR B 35 LYS B 47 -1 N GLN B 36 O THR B 63 SHEET 6 AA3 7 LEU B 17 PHE B 23 -1 N ARG B 20 O THR B 43 SHEET 7 AA3 7 PHE B 83 GLN B 90 -1 O ILE B 85 N ILE B 19 SHEET 1 AA4 2 THR B 128 PRO B 131 0 SHEET 2 AA4 2 HIS B 144 TRP B 147 1 O CYS B 145 N THR B 128 SHEET 1 AA5 2 LEU B 164 GLU B 170 0 SHEET 2 AA5 2 LEU B 173 SER B 178 -1 O GLN B 177 N ALA B 165 SSBOND 1 CYS B 1 CYS B 70 1555 1555 2.04 SSBOND 2 CYS B 3 CYS B 99 1555 1555 2.03 SSBOND 3 CYS B 13 CYS B 124 1555 1555 2.04 SSBOND 4 CYS B 127 CYS B 174 1555 1555 2.06 SSBOND 5 CYS B 132 CYS B 137 1555 1555 2.04 SSBOND 6 CYS B 145 CYS B 166 1555 1555 2.04 LINK OD1 ASP A 107 CA CA A 302 1555 1555 2.56 LINK OD2 ASP A 107 CA CA A 302 1555 1555 2.43 LINK O ASP A 141 CA CA A 305 1555 1555 2.36 LINK NE2 HIS A 151 ZN ZN A 303 1555 1555 2.30 LINK OD2 ASP A 153 ZN ZN A 303 1555 1555 2.37 LINK OD1 ASP A 158 CA CA A 301 1555 1555 2.37 LINK O GLY A 159 CA CA A 301 1555 1555 2.27 LINK O GLY A 161 CA CA A 301 1555 1555 2.45 LINK O VAL A 163 CA CA A 301 1555 1555 2.22 LINK NE2 HIS A 166 ZN ZN A 303 1555 1555 2.09 LINK O GLY A 173 CA CA A 305 1555 1555 2.39 LINK O ASN A 175 CA CA A 305 1555 1555 2.32 LINK OD1 ASP A 177 CA CA A 305 1555 1555 2.74 LINK ND1 HIS A 179 ZN ZN A 303 1555 1555 1.99 LINK OD2 ASP A 181 CA CA A 301 1555 1555 2.52 LINK O ASP A 182 CA CA A 302 1555 1555 2.42 LINK OD1 ASP A 182 CA CA A 302 1555 1555 2.54 LINK OE2 GLU A 184 CA CA A 301 1555 1555 2.46 LINK O GLU A 184 CA CA A 302 1555 1555 3.11 LINK NE2 HIS A 201 ZN ZN A 304 1555 1555 2.03 LINK NE2 HIS A 205 ZN ZN A 304 1555 1555 2.24 LINK NE2 HIS A 211 ZN ZN A 304 1555 1555 1.99 LINK ZN ZN A 304 N CYS B 1 1555 1555 2.18 LINK ZN ZN A 304 O CYS B 1 1555 1555 2.36 LINK CA CA A 305 O HOH A 406 1555 1555 2.49 CISPEP 1 ASN B 78 ARG B 79 0 -22.11 CISPEP 2 ILE B 135 PRO B 136 0 2.73 SITE 1 AC1 6 ASP A 158 GLY A 159 GLY A 161 VAL A 163 SITE 2 AC1 6 ASP A 181 GLU A 184 SITE 1 AC2 4 THR A 105 ASP A 107 ASP A 182 GLU A 184 SITE 1 AC3 4 HIS A 151 ASP A 153 HIS A 166 HIS A 179 SITE 1 AC4 4 HIS A 201 HIS A 205 HIS A 211 CYS B 1 SITE 1 AC5 6 ALA A 140 ASP A 141 GLY A 173 ASN A 175 SITE 2 AC5 6 ASP A 177 HOH A 406 CRYST1 70.031 70.031 319.512 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014279 0.008244 0.000000 0.00000 SCALE2 0.000000 0.016488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003130 0.00000