HEADER LIGASE 03-DEC-18 6N9K TITLE BETA-LACTAMASE FROM ESCHERICHIA COLI STR. SAKAI COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 STRAIN: SAKAI; SOURCE 5 GENE: AMPC, ECPV15279_5067, ECS_5131; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,R.WU,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 3 11-OCT-23 6N9K 1 REMARK REVDAT 2 18-DEC-19 6N9K 1 REMARK REVDAT 1 12-DEC-18 6N9K 0 JRNL AUTH J.OSIPIUK,R.WU,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL BETA-LACTAMASE FROM ESCHERICHIA COLI STR. SAKAI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 107309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5620 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7552 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 395 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 631 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.437 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6236 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5831 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8586 ; 1.672 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13681 ; 1.497 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 846 ; 6.601 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;33.364 ;23.624 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1070 ;13.188 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;12.695 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 825 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7049 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1253 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 504 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4662 45.8580 46.0550 REMARK 3 T TENSOR REMARK 3 T11: 0.0186 T22: 0.0365 REMARK 3 T33: 0.0017 T12: 0.0006 REMARK 3 T13: -0.0041 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.6829 L22: 0.2496 REMARK 3 L33: 0.0309 L12: -0.0544 REMARK 3 L13: -0.0581 L23: 0.0073 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.0160 S13: 0.0120 REMARK 3 S21: -0.0048 S22: -0.0097 S23: 0.0080 REMARK 3 S31: 0.0197 S32: -0.0080 S33: -0.0064 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 504 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1199 45.8961 0.2322 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: 0.0339 REMARK 3 T33: 0.0017 T12: -0.0020 REMARK 3 T13: -0.0015 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.6972 L22: 0.2241 REMARK 3 L33: 0.0950 L12: 0.0733 REMARK 3 L13: -0.0635 L23: -0.0522 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.0084 S13: 0.0131 REMARK 3 S21: 0.0035 S22: -0.0162 S23: -0.0147 REMARK 3 S31: 0.0246 S32: 0.0114 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6N9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 47.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 5GGW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 30% PEG 8000, REMARK 280 0.1 M SODIUM ACETATE:ACETIC ACID BUFFER, PH 4.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.51000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.51000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.51000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 SER B 17 REMARK 465 ASN B 18 REMARK 465 ALA B 19 REMARK 465 ALA B 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 139 C ASP A 139 O 0.121 REMARK 500 ASP A 139 C ASP A 139 O 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 194 -60.39 -123.00 REMARK 500 TYR A 237 13.68 -149.97 REMARK 500 ASN A 357 43.66 -99.40 REMARK 500 VAL B 194 -62.80 -123.85 REMARK 500 TYR B 237 13.57 -147.50 REMARK 500 ASN B 357 41.58 -101.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP97260 RELATED DB: TARGETTRACK DBREF 6N9K A 20 377 UNP Q8XDQ2 Q8XDQ2_ECO57 20 377 DBREF 6N9K B 20 377 UNP Q8XDQ2 Q8XDQ2_ECO57 20 377 SEQADV 6N9K SER A 17 UNP Q8XDQ2 EXPRESSION TAG SEQADV 6N9K ASN A 18 UNP Q8XDQ2 EXPRESSION TAG SEQADV 6N9K ALA A 19 UNP Q8XDQ2 EXPRESSION TAG SEQADV 6N9K SER B 17 UNP Q8XDQ2 EXPRESSION TAG SEQADV 6N9K ASN B 18 UNP Q8XDQ2 EXPRESSION TAG SEQADV 6N9K ALA B 19 UNP Q8XDQ2 EXPRESSION TAG SEQRES 1 A 361 SER ASN ALA ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS SEQRES 2 A 361 ARG THR ILE THR PRO LEU ILE GLU GLN GLN LYS ILE PRO SEQRES 3 A 361 GLY MET ALA VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR SEQRES 4 A 361 TYR PHE THR TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN SEQRES 5 A 361 PRO VAL THR GLN GLN THR LEU PHE GLU LEU GLY SER VAL SEQRES 6 A 361 SER LYS THR PHE THR GLY VAL LEU GLY GLY ASP ALA ILE SEQRES 7 A 361 ALA ARG GLY GLU ILE LYS LEU SER ASP PRO ALA THR LYS SEQRES 8 A 361 TYR TRP PRO GLU LEU THR ALA LYS GLN TRP ASN GLY ILE SEQRES 9 A 361 THR LEU LEU HIS LEU ALA THR TYR THR ALA GLY GLY LEU SEQRES 10 A 361 PRO LEU GLN VAL PRO ASP GLU VAL LYS SER SER SER ASP SEQRES 11 A 361 LEU LEU ARG PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA SEQRES 12 A 361 PRO GLY THR GLN ARG LEU TYR ALA ASN SER SER ILE GLY SEQRES 13 A 361 LEU PHE GLY ALA LEU ALA VAL LYS PRO SER GLY LEU SER SEQRES 14 A 361 PHE GLU GLN ALA MET GLN THR ARG VAL PHE GLN PRO LEU SEQRES 15 A 361 LYS LEU ASN HIS THR TRP ILE ASN VAL PRO PRO ALA GLU SEQRES 16 A 361 GLU LYS ASN TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA SEQRES 17 A 361 VAL HIS VAL SER PRO GLY ALA LEU ASP ALA GLU THR TYR SEQRES 18 A 361 GLY VAL LYS SER THR ILE GLU ASP MET ALA CSX TRP VAL SEQRES 19 A 361 ARG SER ASN MET ASN PRO ARG ASP ILE ASN ASP LYS THR SEQRES 20 A 361 LEU GLN GLN GLY ILE GLN LEU ALA GLN SER ARG TYR TRP SEQRES 21 A 361 GLN THR GLY ASP MET TYR GLN GLY LEU GLY TRP GLU MET SEQRES 22 A 361 LEU ASP TRP PRO VAL ASN PRO ASP ILE ILE VAL ASN GLY SEQRES 23 A 361 SER ASP ASN LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS SEQRES 24 A 361 ALA ILE THR PRO PRO THR PRO ALA VAL ARG ALA SER TRP SEQRES 25 A 361 VAL HIS LYS THR GLY ALA THR GLY GLY PHE GLY SER TYR SEQRES 26 A 361 VAL ALA PHE ILE PRO GLU LYS GLU LEU GLY ILE VAL MET SEQRES 27 A 361 LEU ALA ASN LYS ASN TYR PRO ASN PRO ALA ARG VAL ALA SEQRES 28 A 361 ALA ALA TRP GLN ILE LEU ASN ALA LEU GLN SEQRES 1 B 361 SER ASN ALA ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS SEQRES 2 B 361 ARG THR ILE THR PRO LEU ILE GLU GLN GLN LYS ILE PRO SEQRES 3 B 361 GLY MET ALA VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR SEQRES 4 B 361 TYR PHE THR TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN SEQRES 5 B 361 PRO VAL THR GLN GLN THR LEU PHE GLU LEU GLY SER VAL SEQRES 6 B 361 SER LYS THR PHE THR GLY VAL LEU GLY GLY ASP ALA ILE SEQRES 7 B 361 ALA ARG GLY GLU ILE LYS LEU SER ASP PRO ALA THR LYS SEQRES 8 B 361 TYR TRP PRO GLU LEU THR ALA LYS GLN TRP ASN GLY ILE SEQRES 9 B 361 THR LEU LEU HIS LEU ALA THR TYR THR ALA GLY GLY LEU SEQRES 10 B 361 PRO LEU GLN VAL PRO ASP GLU VAL LYS SER SER SER ASP SEQRES 11 B 361 LEU LEU ARG PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA SEQRES 12 B 361 PRO GLY THR GLN ARG LEU TYR ALA ASN SER SER ILE GLY SEQRES 13 B 361 LEU PHE GLY ALA LEU ALA VAL LYS PRO SER GLY LEU SER SEQRES 14 B 361 PHE GLU GLN ALA MET GLN THR ARG VAL PHE GLN PRO LEU SEQRES 15 B 361 LYS LEU ASN HIS THR TRP ILE ASN VAL PRO PRO ALA GLU SEQRES 16 B 361 GLU LYS ASN TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA SEQRES 17 B 361 VAL HIS VAL SER PRO GLY ALA LEU ASP ALA GLU THR TYR SEQRES 18 B 361 GLY VAL LYS SER THR ILE GLU ASP MET ALA CSX TRP VAL SEQRES 19 B 361 ARG SER ASN MET ASN PRO ARG ASP ILE ASN ASP LYS THR SEQRES 20 B 361 LEU GLN GLN GLY ILE GLN LEU ALA GLN SER ARG TYR TRP SEQRES 21 B 361 GLN THR GLY ASP MET TYR GLN GLY LEU GLY TRP GLU MET SEQRES 22 B 361 LEU ASP TRP PRO VAL ASN PRO ASP ILE ILE VAL ASN GLY SEQRES 23 B 361 SER ASP ASN LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS SEQRES 24 B 361 ALA ILE THR PRO PRO THR PRO ALA VAL ARG ALA SER TRP SEQRES 25 B 361 VAL HIS LYS THR GLY ALA THR GLY GLY PHE GLY SER TYR SEQRES 26 B 361 VAL ALA PHE ILE PRO GLU LYS GLU LEU GLY ILE VAL MET SEQRES 27 B 361 LEU ALA ASN LYS ASN TYR PRO ASN PRO ALA ARG VAL ALA SEQRES 28 B 361 ALA ALA TRP GLN ILE LEU ASN ALA LEU GLN MODRES 6N9K CSX A 248 CYS MODIFIED RESIDUE MODRES 6N9K CSX B 248 CYS MODIFIED RESIDUE HET CSX A 248 11 HET CSX B 248 11 HET SO4 A 501 5 HET GOL A 502 6 HET EDO A 503 4 HET EDO A 504 4 HET SO4 B 501 5 HET GOL B 502 6 HET EDO B 503 4 HET EDO B 504 4 HETNAM CSX S-OXY CYSTEINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSX 2(C3 H7 N O3 S) FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 11 HOH *631(H2 O) HELIX 1 AA1 ALA A 20 LYS A 40 1 21 HELIX 2 AA2 VAL A 81 ARG A 96 1 16 HELIX 3 AA3 PRO A 104 TYR A 108 5 5 HELIX 4 AA4 ALA A 114 ASN A 118 5 5 HELIX 5 AA5 THR A 121 THR A 127 1 7 HELIX 6 AA6 SER A 143 TRP A 154 1 12 HELIX 7 AA7 ALA A 167 VAL A 179 1 13 HELIX 8 AA8 LYS A 180 GLY A 183 5 4 HELIX 9 AA9 SER A 185 VAL A 194 1 10 HELIX 10 AB1 PRO A 208 TYR A 215 5 8 HELIX 11 AB2 LEU A 232 TYR A 237 1 6 HELIX 12 AB3 THR A 242 ASN A 255 1 14 HELIX 13 AB4 PRO A 256 ILE A 259 5 4 HELIX 14 AB5 ASP A 261 GLN A 272 1 12 HELIX 15 AB6 ASN A 295 SER A 303 1 9 HELIX 16 AB7 ASP A 304 LEU A 309 1 6 HELIX 17 AB8 PRO A 346 GLU A 349 5 4 HELIX 18 AB9 PRO A 361 LEU A 376 1 16 HELIX 19 AC1 GLN B 22 LYS B 40 1 19 HELIX 20 AC2 VAL B 81 ARG B 96 1 16 HELIX 21 AC3 PRO B 104 TYR B 108 5 5 HELIX 22 AC4 ALA B 114 ASN B 118 5 5 HELIX 23 AC5 THR B 121 THR B 127 1 7 HELIX 24 AC6 SER B 143 TRP B 154 1 12 HELIX 25 AC7 ALA B 167 VAL B 179 1 13 HELIX 26 AC8 SER B 185 VAL B 194 1 10 HELIX 27 AC9 PRO B 208 TYR B 215 5 8 HELIX 28 AD1 LEU B 232 TYR B 237 1 6 HELIX 29 AD2 THR B 242 ASN B 255 1 14 HELIX 30 AD3 PRO B 256 ILE B 259 5 4 HELIX 31 AD4 ASP B 261 GLN B 272 1 12 HELIX 32 AD5 ASN B 295 SER B 303 1 9 HELIX 33 AD6 ASP B 304 LEU B 309 1 6 HELIX 34 AD7 PRO B 346 GLU B 349 5 4 HELIX 35 AD8 PRO B 361 GLN B 377 1 17 SHEET 1 AA110 GLN A 68 PRO A 69 0 SHEET 2 AA110 LYS A 53 ASP A 63 -1 N ALA A 62 O GLN A 68 SHEET 3 AA110 GLY A 43 TYR A 50 -1 N VAL A 46 O PHE A 57 SHEET 4 AA110 LEU A 350 ALA A 356 -1 O LEU A 355 N ALA A 45 SHEET 5 AA110 GLY A 339 ILE A 345 -1 N ALA A 343 O ILE A 352 SHEET 6 AA110 SER A 327 ALA A 334 -1 N GLY A 333 O SER A 340 SHEET 7 AA110 GLU A 288 ASP A 291 -1 N GLU A 288 O HIS A 330 SHEET 8 AA110 MET A 281 GLN A 283 -1 N TYR A 282 O MET A 289 SHEET 9 AA110 ARG A 274 THR A 278 -1 N THR A 278 O MET A 281 SHEET 10 AA110 LYS A 315 THR A 321 -1 O LYS A 315 N GLN A 277 SHEET 1 AA2 2 PHE A 76 GLU A 77 0 SHEET 2 AA2 2 LYS A 240 SER A 241 -1 O SER A 241 N PHE A 76 SHEET 1 AA3 2 GLN A 163 ARG A 164 0 SHEET 2 AA3 2 ARG A 312 PRO A 313 -1 O ARG A 312 N ARG A 164 SHEET 1 AA4 2 GLY A 218 ARG A 220 0 SHEET 2 AA4 2 LYS A 223 VAL A 225 -1 O VAL A 225 N GLY A 218 SHEET 1 AA510 GLN B 68 PRO B 69 0 SHEET 2 AA510 LYS B 53 ASP B 63 -1 N ALA B 62 O GLN B 68 SHEET 3 AA510 GLY B 43 TYR B 50 -1 N VAL B 46 O PHE B 57 SHEET 4 AA510 LEU B 350 ALA B 356 -1 O GLY B 351 N ILE B 49 SHEET 5 AA510 PHE B 338 ILE B 345 -1 N ILE B 345 O LEU B 350 SHEET 6 AA510 SER B 327 THR B 335 -1 N VAL B 329 O PHE B 344 SHEET 7 AA510 GLU B 288 ASP B 291 -1 N LEU B 290 O TRP B 328 SHEET 8 AA510 MET B 281 GLN B 283 -1 N TYR B 282 O MET B 289 SHEET 9 AA510 ARG B 274 THR B 278 -1 N THR B 278 O MET B 281 SHEET 10 AA510 LYS B 315 THR B 321 -1 O LYS B 315 N GLN B 277 SHEET 1 AA6 2 PHE B 76 GLU B 77 0 SHEET 2 AA6 2 LYS B 240 SER B 241 -1 O SER B 241 N PHE B 76 SHEET 1 AA7 2 GLN B 163 ARG B 164 0 SHEET 2 AA7 2 ARG B 312 PRO B 313 -1 O ARG B 312 N ARG B 164 SHEET 1 AA8 2 GLY B 218 ARG B 220 0 SHEET 2 AA8 2 LYS B 223 VAL B 225 -1 O VAL B 225 N GLY B 218 LINK C ALA A 247 N CSX A 248 1555 1555 1.33 LINK C CSX A 248 N TRP A 249 1555 1555 1.32 LINK C ALA B 247 N CSX B 248 1555 1555 1.34 LINK C CSX B 248 N TRP B 249 1555 1555 1.34 CISPEP 1 TRP A 292 PRO A 293 0 1.09 CISPEP 2 THR A 318 PRO A 319 0 -11.73 CISPEP 3 TRP B 292 PRO B 293 0 2.07 CISPEP 4 THR B 318 PRO B 319 0 -2.45 SITE 1 AC1 9 SER A 80 TYR A 166 LYS A 331 THR A 332 SITE 2 AC1 9 GLY A 333 ALA A 334 HOH A 605 HOH A 625 SITE 3 AC1 9 HOH A 804 SITE 1 AC2 5 ASP A 297 GLN A 371 HOH A 764 HOH A 838 SITE 2 AC2 5 ASP B 297 SITE 1 AC3 1 LYS A 180 SITE 1 AC4 3 GLY A 222 LYS A 358 HOH A 763 SITE 1 AC5 10 SER B 80 TYR B 166 LYS B 331 THR B 332 SITE 2 AC5 10 GLY B 333 ALA B 334 HOH B 609 HOH B 647 SITE 3 AC5 10 HOH B 767 HOH B 836 SITE 1 AC6 3 ASP A 297 ASP B 297 GLN B 371 SITE 1 AC7 1 LYS B 180 SITE 1 AC8 3 GLY B 222 LYS B 358 HOH B 735 CRYST1 127.929 127.929 93.020 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007817 0.004513 0.000000 0.00000 SCALE2 0.000000 0.009026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010750 0.00000