HEADER DNA BINDING PROTEIN 03-DEC-18 6N9L TITLE CRYSTAL STRUCTURE OF T. MARITIMA UVRA D117-399 WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UVRA PROTEIN,EXCINUCLEASE ABC SUBUNIT A,UVRA PROTEIN, COMPND 5 EXCINUCLEASE ABC SUBUNIT A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: UVRA, TM_0480; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA BINDING PROTEIN, UVRA, NUCLEOTIDE EXCISION REPAIR, NER, ADP, KEYWDS 2 HYDROLASE, DNA DAMAGE REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR S.HARTLEY,B.CASE,M.OSUGA,M.M.HINGORANI,D.JERUZALMI REVDAT 4 11-OCT-23 6N9L 1 REMARK REVDAT 3 27-NOV-19 6N9L 1 REMARK REVDAT 2 03-JUL-19 6N9L 1 JRNL REVDAT 1 01-MAY-19 6N9L 0 JRNL AUTH B.C.CASE,S.HARTLEY,M.OSUGA,D.JERUZALMI,M.M.HINGORANI JRNL TITL THE ATPASE MECHANISM OF UVRA2 REVEALS THE DISTINCT ROLES OF JRNL TITL 2 PROXIMAL AND DISTAL ATPASE SITES IN NUCLEOTIDE EXCISION JRNL TITL 3 REPAIR. JRNL REF NUCLEIC ACIDS RES. V. 47 4136 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 30892613 JRNL DOI 10.1093/NAR/GKZ180 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 51809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0560 - 4.0187 0.97 6854 157 0.1530 0.1809 REMARK 3 2 4.0187 - 3.1902 0.98 6761 151 0.1523 0.1691 REMARK 3 3 3.1902 - 2.7871 0.96 6627 152 0.1699 0.2121 REMARK 3 4 2.7871 - 2.5324 0.93 6443 138 0.1743 0.2292 REMARK 3 5 2.5324 - 2.3509 0.93 6376 149 0.1782 0.2059 REMARK 3 6 2.3509 - 2.2123 0.90 6193 137 0.1895 0.2424 REMARK 3 7 2.2123 - 2.1015 0.84 5802 123 0.2133 0.2664 REMARK 3 8 2.1015 - 2.0100 0.82 5612 134 0.2499 0.2581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5011 REMARK 3 ANGLE : 1.076 6777 REMARK 3 CHIRALITY : 0.065 789 REMARK 3 PLANARITY : 0.006 862 REMARK 3 DIHEDRAL : 10.467 3052 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 21.7381 3.0624 25.9285 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.1230 REMARK 3 T33: 0.1334 T12: 0.0078 REMARK 3 T13: 0.0015 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.5692 L22: 0.6217 REMARK 3 L33: 0.5207 L12: 0.0623 REMARK 3 L13: 0.0767 L23: 0.1356 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.0296 S13: -0.0073 REMARK 3 S21: -0.0137 S22: 0.0195 S23: 0.0367 REMARK 3 S31: 0.0363 S32: -0.0172 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-16; 28-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 98.2; 100 REMARK 200 PH : 7.0-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; APS REMARK 200 BEAMLINE : BL12-2; 21-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946; 0.97918 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M; DECTRIS REMARK 200 EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51809 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 38.049 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UX8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES-NAOH, PH 7.5 AND 22W/V REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.56700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.68950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.56700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.68950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 ALA A 61 REMARK 465 ARG A 62 REMARK 465 GLN A 63 REMARK 465 PHE A 64 REMARK 465 LEU A 65 REMARK 465 GLY A 66 REMARK 465 ASN A 67 REMARK 465 LEU A 68 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1492 O HOH A 1529 1.81 REMARK 500 O HOH A 1101 O HOH A 1115 1.88 REMARK 500 O LYS A 641 O HOH A 1101 1.91 REMARK 500 OE1 GLU A 77 O HOH A 1102 1.94 REMARK 500 O HOH A 1486 O HOH A 1528 1.96 REMARK 500 O HOH A 1487 O HOH A 1530 1.99 REMARK 500 O HOH A 1311 O HOH A 1511 2.01 REMARK 500 OG1 THR A 427 OE1 GLU A 430 2.04 REMARK 500 O HOH A 1240 O HOH A 1456 2.05 REMARK 500 NH1 ARG A 827 O HOH A 1103 2.05 REMARK 500 OE1 GLN A 801 O HOH A 1104 2.05 REMARK 500 O HOH A 1327 O HOH A 1442 2.06 REMARK 500 O HOH A 1266 O HOH A 1399 2.08 REMARK 500 NZ LYS A 422 O HOH A 1105 2.11 REMARK 500 O HOH A 1241 O HOH A 1370 2.11 REMARK 500 O HOH A 1455 O HOH A 1466 2.12 REMARK 500 OG SER A 96 O HOH A 1106 2.12 REMARK 500 NH2 ARG A 746 O HOH A 1107 2.14 REMARK 500 O HOH A 1307 O HOH A 1446 2.16 REMARK 500 SG CYS A 742 O HOH A 1270 2.17 REMARK 500 O HOH A 1258 O HOH A 1439 2.18 REMARK 500 O TYR A 60 O HOH A 1108 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 576 CE LYS A 576 NZ 0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 12 -117.27 49.94 REMARK 500 LYS A 15 46.51 -90.21 REMARK 500 THR A 44 -67.46 -108.33 REMARK 500 THR A 59 6.43 55.36 REMARK 500 ILE A 115 -56.46 -132.68 REMARK 500 ASN A 425 52.08 -150.90 REMARK 500 GLU A 492 65.05 37.31 REMARK 500 ASN A 598 -122.43 52.33 REMARK 500 LYS A 601 57.74 -95.18 REMARK 500 THR A 630 -63.96 -125.39 REMARK 500 LYS A 641 82.32 58.24 REMARK 500 LYS A 643 28.48 175.03 REMARK 500 MET A 729 -146.15 -76.99 REMARK 500 PHE A 731 108.88 -54.66 REMARK 500 PRO A 733 92.71 -52.04 REMARK 500 ARG A 746 -13.26 83.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 642 LYS A 643 122.07 REMARK 500 MET A 729 LEU A 730 149.85 REMARK 500 LEU A 730 PHE A 731 -137.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 716 SG REMARK 620 2 CYS A 719 SG 104.8 REMARK 620 3 CYS A 739 SG 107.8 120.8 REMARK 620 4 CYS A 742 SG 125.9 108.6 90.0 REMARK 620 5 HOH A1270 O 122.6 63.6 126.9 48.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1003 DBREF 6N9L A 2 117 UNP Q9WYV0 UVRA_THEMA 2 117 DBREF 6N9L A 400 916 UNP Q9WYV0 UVRA_THEMA 400 916 SEQADV 6N9L MET A -5 UNP Q9WYV0 INITIATING METHIONINE SEQADV 6N9L HIS A -4 UNP Q9WYV0 EXPRESSION TAG SEQADV 6N9L HIS A -3 UNP Q9WYV0 EXPRESSION TAG SEQADV 6N9L HIS A -2 UNP Q9WYV0 EXPRESSION TAG SEQADV 6N9L HIS A -1 UNP Q9WYV0 EXPRESSION TAG SEQADV 6N9L HIS A 0 UNP Q9WYV0 EXPRESSION TAG SEQADV 6N9L HIS A 1 UNP Q9WYV0 EXPRESSION TAG SEQRES 1 A 640 MET HIS HIS HIS HIS HIS HIS ASN GLU ILE VAL VAL LYS SEQRES 2 A 640 GLY ALA ARG VAL HIS ASN LEU LYS ASN ILE THR VAL ARG SEQRES 3 A 640 ILE PRO LYS ASN ARG LEU VAL VAL ILE THR GLY VAL SER SEQRES 4 A 640 GLY SER GLY LYS SER SER LEU ALA MET ASP THR ILE TYR SEQRES 5 A 640 ALA GLU GLY GLN ARG ARG TYR LEU GLU SER LEU SER THR SEQRES 6 A 640 TYR ALA ARG GLN PHE LEU GLY ASN LEU LYS LYS PRO ASP SEQRES 7 A 640 VAL ASP GLU ILE GLU GLY LEU SER PRO ALA ILE ALA ILE SEQRES 8 A 640 ASP GLN LYS THR VAL SER HIS ASN PRO ARG SER THR VAL SEQRES 9 A 640 GLY THR VAL THR GLU ILE TYR ASP TYR LEU ARG VAL LEU SEQRES 10 A 640 TYR ALA ARG ILE GLY LYS LYS ILE ASN GLY LEU ASN ILE SEQRES 11 A 640 HIS GLU PHE THR GLU LEU SER ILE SER GLU GLU LEU GLU SEQRES 12 A 640 PHE LEU LYS ASN LEU ASN LEU THR GLU ARG GLU ARG GLU SEQRES 13 A 640 ILE VAL GLY GLU LEU LEU LYS GLU ILE GLU LYS ARG LEU SEQRES 14 A 640 GLU PHE LEU VAL ASP VAL GLY LEU GLU TYR LEU THR LEU SEQRES 15 A 640 SER ARG SER ALA THR THR LEU SER GLY GLY GLU SER GLN SEQRES 16 A 640 ARG ILE ARG LEU ALA THR GLN ILE GLY SER GLY LEU THR SEQRES 17 A 640 GLY VAL ILE TYR VAL LEU ASP GLU PRO THR ILE GLY LEU SEQRES 18 A 640 HIS PRO ARG ASP THR GLU ARG LEU ILE LYS THR LEU LYS SEQRES 19 A 640 LYS LEU ARG ASP LEU GLY ASN THR VAL ILE VAL VAL GLU SEQRES 20 A 640 HIS ASP GLU GLU VAL ILE ARG ASN ALA ASP HIS ILE ILE SEQRES 21 A 640 ASP ILE GLY PRO GLY GLY GLY THR ASN GLY GLY ARG VAL SEQRES 22 A 640 VAL PHE GLN GLY THR VAL ASP GLU LEU LEU LYS ASN PRO SEQRES 23 A 640 ASP SER SER LEU THR GLY GLU TYR LEU SER GLY LYS ARG SEQRES 24 A 640 LYS ILE THR VAL ASN LYS THR ARG ARG LEU PRO TYR ALA SEQRES 25 A 640 SER LEU LYS ILE LYS GLY VAL ARG HIS ASN ASN LEU LYS SEQRES 26 A 640 ASN ILE ASP VAL GLU ILE PRO LEU GLY VAL PHE VAL CYS SEQRES 27 A 640 VAL THR GLY VAL SER GLY SER GLY LYS SER SER LEU VAL SEQRES 28 A 640 MET GLU THR LEU TYR PRO ALA LEU MET ASN LEU LEU HIS SEQRES 29 A 640 LYS THR LYS LEU PRO ALA GLY GLU PHE ASP SER ILE GLU SEQRES 30 A 640 GLY HIS GLU ASN ILE ASP LYS MET ILE ALA ILE ASP GLN SEQRES 31 A 640 SER PRO ILE GLY ARG THR PRO ARG SER ASN PRO ALA THR SEQRES 32 A 640 TYR THR LYS VAL PHE ASP GLU ILE ARG SER LEU PHE ALA SEQRES 33 A 640 MET THR PRO ALA ALA LYS ALA ARG GLY TYR ASN LYS SER SEQRES 34 A 640 ARG PHE SER PHE ASN LEU LYS GLY GLY ARG CYS GLU ALA SEQRES 35 A 640 CYS GLN GLY GLN GLY TYR VAL LYS ILE GLU MET LEU PHE SEQRES 36 A 640 LEU PRO ASP VAL TYR VAL GLU CYS ASP VAL CYS LYS GLY SEQRES 37 A 640 LYS ARG TYR ASN ARG GLU THR LEU GLU ILE THR TYR LYS SEQRES 38 A 640 GLY LYS ASN ILE SER ASP ILE LEU ASP MET THR VAL ASP SEQRES 39 A 640 GLU ALA LEU GLU PHE PHE LYS ASN ILE PRO SER ILE LYS SEQRES 40 A 640 ARG THR LEU GLN VAL LEU HIS ASP VAL GLY LEU GLY TYR SEQRES 41 A 640 VAL LYS LEU GLY GLN PRO ALA THR THR LEU SER GLY GLY SEQRES 42 A 640 GLU ALA GLN ARG ILE LYS LEU ALA SER GLU LEU ARG LYS SEQRES 43 A 640 ARG ASP THR GLY ARG THR LEU TYR ILE LEU ASP GLU PRO SEQRES 44 A 640 THR VAL GLY LEU HIS PHE GLU ASP VAL ARG LYS LEU VAL SEQRES 45 A 640 GLU VAL LEU HIS ARG LEU VAL ASP ARG GLY ASN THR VAL SEQRES 46 A 640 ILE VAL ILE GLU HIS ASN LEU ASP VAL ILE LYS ASN ALA SEQRES 47 A 640 ASP HIS ILE ILE ASP LEU GLY PRO GLU GLY GLY LYS GLU SEQRES 48 A 640 GLY GLY TYR ILE VAL ALA THR GLY THR PRO GLU GLU ILE SEQRES 49 A 640 ALA LYS ASN PRO HIS SER TYR THR GLY ARG PHE LEU LYS SEQRES 50 A 640 ASN VAL LEU HET ZN A1001 1 HET ADP A1002 27 HET ADP A1003 27 HETNAM ZN ZINC ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ZN ZN 2+ FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 HOH *431(H2 O) HELIX 1 AA1 GLY A 36 MET A 42 1 7 HELIX 2 AA2 THR A 44 GLU A 55 1 12 HELIX 3 AA3 THR A 97 THR A 102 1 6 HELIX 4 AA4 GLU A 103 ARG A 114 1 12 HELIX 5 AA5 ASN A 405 GLU A 411 1 7 HELIX 6 AA6 SER A 413 ASN A 423 1 11 HELIX 7 AA7 ARG A 429 VAL A 451 1 23 HELIX 8 AA8 SER A 461 LEU A 465 5 5 HELIX 9 AA9 SER A 466 GLY A 482 1 17 HELIX 10 AB1 HIS A 498 ARG A 500 5 3 HELIX 11 AB2 ASP A 501 LEU A 515 1 15 HELIX 12 AB3 ASP A 525 ASN A 531 1 7 HELIX 13 AB4 GLY A 542 GLY A 546 5 5 HELIX 14 AB5 THR A 554 ASN A 561 1 8 HELIX 15 AB6 SER A 565 SER A 572 1 8 HELIX 16 AB7 GLY A 622 MET A 628 1 7 HELIX 17 AB8 THR A 630 HIS A 640 1 11 HELIX 18 AB9 GLY A 654 ILE A 658 5 5 HELIX 19 AC1 ASN A 676 THR A 681 1 6 HELIX 20 AC2 LYS A 682 MET A 693 1 12 HELIX 21 AC3 THR A 694 GLY A 701 1 8 HELIX 22 AC4 ASN A 703 SER A 708 5 6 HELIX 23 AC5 ASN A 748 GLU A 753 1 6 HELIX 24 AC6 ASN A 760 ASP A 766 1 7 HELIX 25 AC7 THR A 768 PHE A 776 1 9 HELIX 26 AC8 ILE A 779 VAL A 792 1 14 HELIX 27 AC9 PRO A 802 LEU A 806 5 5 HELIX 28 AD1 SER A 807 LYS A 822 1 16 HELIX 29 AD2 HIS A 840 ARG A 857 1 18 HELIX 30 AD3 ASN A 867 LYS A 872 1 6 HELIX 31 AD4 GLY A 884 GLY A 888 5 5 HELIX 32 AD5 THR A 896 LYS A 902 1 7 HELIX 33 AD6 SER A 906 LYS A 913 1 8 SHEET 1 AA1 3 ILE A 17 PRO A 22 0 SHEET 2 AA1 3 GLU A 3 ALA A 9 -1 N VAL A 6 O VAL A 19 SHEET 3 AA1 3 GLU A 75 GLU A 77 -1 O GLU A 75 N LYS A 7 SHEET 1 AA2 6 ALA A 82 ILE A 85 0 SHEET 2 AA2 6 ILE A 487 ASP A 491 1 O VAL A 489 N ILE A 85 SHEET 3 AA2 6 THR A 518 VAL A 522 1 O ILE A 520 N TYR A 488 SHEET 4 AA2 6 LEU A 26 THR A 30 1 N VAL A 27 O VAL A 521 SHEET 5 AA2 6 HIS A 534 GLY A 539 1 O ILE A 538 N THR A 30 SHEET 6 AA2 6 ARG A 548 GLY A 553 -1 O GLY A 553 N ILE A 535 SHEET 1 AA3 3 ILE A 603 LEU A 609 0 SHEET 2 AA3 3 ALA A 588 VAL A 595 -1 N LEU A 590 O ILE A 607 SHEET 3 AA3 3 SER A 651 GLU A 653 -1 O SER A 651 N LYS A 593 SHEET 1 AA4 6 LYS A 660 ALA A 663 0 SHEET 2 AA4 6 THR A 828 ASP A 833 1 O LEU A 829 N ILE A 662 SHEET 3 AA4 6 THR A 860 ILE A 864 1 O THR A 860 N TYR A 830 SHEET 4 AA4 6 PHE A 612 THR A 616 1 N VAL A 613 O VAL A 861 SHEET 5 AA4 6 HIS A 876 GLY A 881 1 O LEU A 880 N THR A 616 SHEET 6 AA4 6 TYR A 890 GLY A 895 -1 O ALA A 893 N ASP A 879 SHEET 1 AA5 2 TYR A 724 LYS A 726 0 SHEET 2 AA5 2 TYR A 736 GLU A 738 -1 O VAL A 737 N VAL A 725 LINK SG CYS A 716 ZN ZN A1001 1555 1555 2.42 LINK SG CYS A 719 ZN ZN A1001 1555 1555 2.26 LINK SG CYS A 739 ZN ZN A1001 1555 1555 2.59 LINK SG CYS A 742 ZN ZN A1001 1555 1555 2.61 LINK ZN ZN A1001 O HOH A1270 1555 1555 2.70 CISPEP 1 GLY A 539 PRO A 540 0 2.66 CISPEP 2 GLY A 881 PRO A 882 0 2.60 SITE 1 AC1 5 CYS A 716 CYS A 719 CYS A 739 CYS A 742 SITE 2 AC1 5 HOH A1270 SITE 1 AC2 19 HIS A 12 ASN A 13 SER A 33 GLY A 34 SITE 2 AC2 19 SER A 35 GLY A 36 LYS A 37 SER A 38 SITE 3 AC2 19 SER A 39 GLY A 543 TYR A 796 GLN A 801 SITE 4 AC2 19 THR A 805 HOH A1104 HOH A1118 HOH A1184 SITE 5 AC2 19 HOH A1185 HOH A1263 HOH A1319 SITE 1 AC3 21 TYR A 455 ARG A 460 ASN A 598 ASN A 599 SITE 2 AC3 21 SER A 619 GLY A 620 SER A 621 GLY A 622 SITE 3 AC3 21 LYS A 623 SER A 624 SER A 625 GLY A 885 SITE 4 AC3 21 HOH A1114 HOH A1193 HOH A1198 HOH A1221 SITE 5 AC3 21 HOH A1226 HOH A1253 HOH A1261 HOH A1279 SITE 6 AC3 21 HOH A1378 CRYST1 143.134 81.379 90.416 90.00 125.30 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006986 0.000000 0.004947 0.00000 SCALE2 0.000000 0.012288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013552 0.00000