HEADER VIRAL PROTEIN 04-DEC-18 6N9Y TITLE ATOMIC STRUCTURE OF NON-STRUCTURAL PROTEIN 1 OF BLUETONGUE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 1; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLUETONGUE VIRUS 23; SOURCE 3 ORGANISM_TAXID: 45031 KEYWDS BLUETONGUE VIRUS NON-STRUCTURAL PROTEIN 1, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR A.KERVIEL,P.GE,M.LAI,J.JIH,M.BOYCE,X.ZHANG,Z.H.ZHOU,P.ROY REVDAT 5 20-MAR-24 6N9Y 1 REMARK REVDAT 4 18-DEC-19 6N9Y 1 SCALE REVDAT 3 27-NOV-19 6N9Y 1 REMARK REVDAT 2 01-MAY-19 6N9Y 1 JRNL REVDAT 1 13-MAR-19 6N9Y 0 JRNL AUTH A.KERVIEL,P.GE,M.LAI,J.JIH,M.BOYCE,X.ZHANG,Z.H.ZHOU,P.ROY JRNL TITL ATOMIC STRUCTURE OF THE TRANSLATION REGULATORY PROTEIN NS1 JRNL TITL 2 OF BLUETONGUE VIRUS. JRNL REF NAT MICROBIOL V. 4 837 2019 JRNL REFN ESSN 2058-5276 JRNL PMID 30778144 JRNL DOI 10.1038/S41564-019-0369-X REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EMAN, LEGINON, CTFFIND, RELION, RELION, REMARK 3 RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.000 REMARK 3 NUMBER OF PARTICLES : 7800 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6N9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238343. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : HELICAL ARRAY REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : NON-STRUCTURAL PROTEIN 1 REMARK 245 (TUBULE) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 5006 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 28 99.15 -69.85 REMARK 500 ASN A 40 -19.78 70.83 REMARK 500 GLN A 124 43.43 -97.30 REMARK 500 SER A 125 -167.68 -69.93 REMARK 500 ALA A 126 73.88 59.65 REMARK 500 LEU A 127 -175.61 -66.04 REMARK 500 VAL A 128 39.33 -98.35 REMARK 500 ASN A 129 157.92 -45.86 REMARK 500 LYS A 150 -159.22 -90.05 REMARK 500 THR A 204 122.77 -26.58 REMARK 500 PHE A 272 70.80 49.88 REMARK 500 THR A 286 -63.80 -93.65 REMARK 500 ARG A 388 62.34 63.37 REMARK 500 THR A 406 71.18 56.64 REMARK 500 ARG A 471 -169.66 -77.39 REMARK 500 PRO A 531 48.44 -91.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 129 SER A 130 -138.60 REMARK 500 ASN A 203 THR A 204 -147.62 REMARK 500 GLU A 255 GLU A 256 -146.08 REMARK 500 THR A 406 GLY A 407 -147.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0383 RELATED DB: EMDB REMARK 900 ATOMIC STRUCTURE OF NON-STRUCTURAL PROTEIN 1 OF BLUETONGUE VIRUS DBREF 6N9Y A 1 552 UNP L7WU69 L7WU69_9REOV 1 552 SEQRES 1 A 552 MET GLU ARG PHE LEU ARG LYS TYR ASN ILE SER GLY ASP SEQRES 2 A 552 TYR ALA ASN ALA THR ARG THR PHE LEU ALA ILE SER PRO SEQRES 3 A 552 GLN TRP THR CYS SER HIS LEU LYS ARG ASN CYS LEU PHE SEQRES 4 A 552 ASN GLY MET CYS ALA LYS GLN ASN PHE GLU ARG ALA MET SEQRES 5 A 552 ILE ALA ALA THR ASP ALA GLU GLU PRO ALA LYS ALA TYR SEQRES 6 A 552 ARG LEU VAL GLU LEU ALA LYS GLU ALA MET TYR ASP ARG SEQRES 7 A 552 GLU THR VAL TRP LEU GLN CYS PHE LYS SER PHE SER GLN SEQRES 8 A 552 PRO TYR GLU GLU ASP ILE GLU GLY LYS MET LYS ARG CYS SEQRES 9 A 552 GLY ALA GLN LEU LEU GLU ASP TYR ARG LYS ASN GLY MET SEQRES 10 A 552 MET ASP GLU ALA VAL LYS GLN SER ALA LEU VAL ASN SER SEQRES 11 A 552 GLU ARG VAL ARG LEU ASP ASP SER LEU SER ALA MET PRO SEQRES 12 A 552 TYR ILE TYR VAL PRO ILE LYS GLU GLY GLN ILE VAL ASN SEQRES 13 A 552 PRO THR PHE ILE SER ARG TYR ARG GLN ILE ALA TYR TYR SEQRES 14 A 552 PHE TYR SER PRO ASN LEU ALA ASP ASP TRP ILE ASP PRO SEQRES 15 A 552 ASN LEU PHE GLY ILE ARG GLY GLN HIS ASN GLN ILE LYS SEQRES 16 A 552 ARG GLU ILE GLU ARG GLN VAL ASN THR CYS PRO TYR THR SEQRES 17 A 552 GLY TYR LYS GLY ARG VAL LEU GLN VAL MET PHE LEU PRO SEQRES 18 A 552 ILE GLN LEU ILE ASN PHE LEU ARG MET ASP ASP PHE ALA SEQRES 19 A 552 LYS HIS PHE ASN ARG TYR ALA SER MET ALA ILE GLN GLN SEQRES 20 A 552 TYR LEU ARG VAL GLY TYR ALA GLU GLU VAL ARG TYR VAL SEQRES 21 A 552 GLN GLN LEU PHE GLY LYS ILE PRO THR GLY GLU PHE PRO SEQRES 22 A 552 LEU HIS HIS MET MET LEU MET ARG ARG ASP PHE PRO THR SEQRES 23 A 552 ARG ASP ARG SER ILE VAL GLU ALA ARG VAL ARG ARG SER SEQRES 24 A 552 GLY ASP GLU ASN TRP GLN SER TRP LEU LEU PRO MET ILE SEQRES 25 A 552 ILE VAL ARG GLU GLY LEU ASP HIS GLN ASP ARG TRP GLU SEQRES 26 A 552 TRP LEU ILE ASP TYR MET ASP ARG LYS HIS THR CYS GLN SEQRES 27 A 552 LEU CYS TYR LEU LYS HIS SER LYS GLN ILE PRO THR CYS SEQRES 28 A 552 GLY VAL ILE ASP VAL ARG ALA SER GLU LEU THR GLY CYS SEQRES 29 A 552 SER PRO PHE LYS THR VAL LYS ILE GLU GLU HIS VAL GLY SEQRES 30 A 552 ASN ASN SER VAL PHE GLU THR LYS LEU VAL ARG ASP GLU SEQRES 31 A 552 GLN ILE GLY ARG ILE GLY ASP HIS TYR TYR THR THR ASN SEQRES 32 A 552 CYS TYR THR GLY ALA GLU ALA LEU ILE THR THR ALA ILE SEQRES 33 A 552 HIS ILE HIS ARG TRP ILE ARG GLY CYS GLY ILE TRP ASN SEQRES 34 A 552 ASP GLU GLY TRP ARG GLU GLY ILE PHE MET LEU GLY ARG SEQRES 35 A 552 VAL LEU LEU ARG TRP GLU LEU THR LYS ALA GLN ARG SER SEQRES 36 A 552 ALA LEU LEU ARG LEU PHE CYS PHE VAL CYS TYR GLY TYR SEQRES 37 A 552 ALA PRO ARG ALA ASP GLY THR ILE PRO ASP TRP ASN ASN SEQRES 38 A 552 LEU GLY SER PHE LEU ASP THR ILE LEU LYS GLY PRO GLU SEQRES 39 A 552 LEU SER GLU ASP GLU ASP GLU ARG ALA TYR ALA THR MET SEQRES 40 A 552 PHE GLU MET VAL ARG CYS ILE ILE THR LEU CYS TYR ALA SEQRES 41 A 552 GLU LYS VAL HIS PHE ALA GLY PHE ALA ALA PRO ALA CYS SEQRES 42 A 552 GLU SER GLY GLU VAL ILE ASN LEU ALA ALA ARG MET SER SEQRES 43 A 552 GLN MET ARG MET GLU TYR HELIX 1 AA1 MET A 1 ASN A 9 1 9 HELIX 2 AA2 SER A 11 SER A 25 1 15 HELIX 3 AA3 LYS A 34 LEU A 38 5 5 HELIX 4 AA4 ASN A 47 ALA A 55 1 9 HELIX 5 AA5 GLU A 60 GLU A 73 1 14 HELIX 6 AA6 ASP A 77 GLN A 91 1 15 HELIX 7 AA7 ASP A 96 ASN A 115 1 20 HELIX 8 AA8 GLY A 116 LYS A 123 1 8 HELIX 9 AA9 ALA A 141 TYR A 146 5 6 HELIX 10 AB1 LEU A 184 VAL A 202 1 19 HELIX 11 AB2 LEU A 224 ARG A 229 1 6 HELIX 12 AB3 MET A 230 LEU A 249 1 20 HELIX 13 AB4 GLU A 256 GLY A 265 1 10 HELIX 14 AB5 LEU A 274 LEU A 279 1 6 HELIX 15 AB6 SER A 290 ARG A 297 1 8 HELIX 16 AB7 ASN A 303 TRP A 307 5 5 HELIX 17 AB8 MET A 311 LEU A 318 1 8 HELIX 18 AB9 ARG A 323 LYS A 334 1 12 HELIX 19 AC1 GLN A 338 HIS A 344 1 7 HELIX 20 AC2 ASP A 355 THR A 362 1 8 HELIX 21 AC3 ALA A 408 ILE A 422 1 15 HELIX 22 AC4 ASN A 429 GLU A 431 5 3 HELIX 23 AC5 GLY A 432 TRP A 447 1 16 HELIX 24 AC6 THR A 450 CYS A 465 1 16 HELIX 25 AC7 ASN A 481 LYS A 491 1 11 HELIX 26 AC8 SER A 496 TYR A 519 1 24 HELIX 27 AC9 SER A 535 MET A 550 1 16 SHEET 1 AA1 2 LEU A 139 SER A 140 0 SHEET 2 AA1 2 LEU A 309 PRO A 310 -1 O LEU A 309 N SER A 140 SHEET 1 AA2 2 VAL A 147 ILE A 149 0 SHEET 2 AA2 2 ASP A 178 ILE A 180 -1 O ASP A 178 N ILE A 149 SHEET 1 AA3 3 PHE A 159 ARG A 162 0 SHEET 2 AA3 3 ALA A 167 TYR A 171 -1 O TYR A 168 N SER A 161 SHEET 3 AA3 3 MET A 218 PRO A 221 1 O LEU A 220 N TYR A 169 SHEET 1 AA4 4 THR A 350 ILE A 354 0 SHEET 2 AA4 4 PHE A 367 HIS A 375 -1 O VAL A 370 N CYS A 351 SHEET 3 AA4 4 HIS A 398 ASN A 403 -1 O THR A 401 N LYS A 371 SHEET 4 AA4 4 GLU A 390 ILE A 395 -1 N GLY A 393 O TYR A 400 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000