HEADER    VIRAL PROTEIN                           04-DEC-18   6N9Y              
TITLE     ATOMIC STRUCTURE OF NON-STRUCTURAL PROTEIN 1 OF BLUETONGUE VIRUS      
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NON-STRUCTURAL PROTEIN 1;                                  
COMPND   3 CHAIN: A                                                             
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: BLUETONGUE VIRUS 23;                            
SOURCE   3 ORGANISM_TAXID: 45031                                                
KEYWDS    BLUETONGUE VIRUS NON-STRUCTURAL PROTEIN 1, VIRAL PROTEIN              
EXPDTA    ELECTRON MICROSCOPY                                                   
AUTHOR    A.KERVIEL,P.GE,M.LAI,J.JIH,M.BOYCE,X.ZHANG,Z.H.ZHOU,P.ROY             
REVDAT   5   20-MAR-24 6N9Y    1       REMARK                                   
REVDAT   4   18-DEC-19 6N9Y    1       SCALE                                    
REVDAT   3   27-NOV-19 6N9Y    1       REMARK                                   
REVDAT   2   01-MAY-19 6N9Y    1       JRNL                                     
REVDAT   1   13-MAR-19 6N9Y    0                                                
JRNL        AUTH   A.KERVIEL,P.GE,M.LAI,J.JIH,M.BOYCE,X.ZHANG,Z.H.ZHOU,P.ROY    
JRNL        TITL   ATOMIC STRUCTURE OF THE TRANSLATION REGULATORY PROTEIN NS1   
JRNL        TITL 2 OF BLUETONGUE VIRUS.                                         
JRNL        REF    NAT MICROBIOL                 V.   4   837 2019              
JRNL        REFN                   ESSN 2058-5276                               
JRNL        PMID   30778144                                                     
JRNL        DOI    10.1038/S41564-019-0369-X                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    4.00 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   SOFTWARE PACKAGES      : EMAN, LEGINON, CTFFIND, RELION, RELION,   
REMARK   3                            RELION, PHENIX                            
REMARK   3   RECONSTRUCTION SCHEMA  : BACK PROJECTION                           
REMARK   3                                                                      
REMARK   3 EM MAP-MODEL FITTING AND REFINEMENT                                  
REMARK   3   PDB ENTRY                    : NULL                                
REMARK   3   REFINEMENT SPACE             : REAL                                
REMARK   3   REFINEMENT PROTOCOL          : AB INITIO MODEL                     
REMARK   3   REFINEMENT TARGET            : NULL                                
REMARK   3   OVERALL ANISOTROPIC B VALUE  : NULL                                
REMARK   3                                                                      
REMARK   3 FITTING PROCEDURE : NULL                                             
REMARK   3                                                                      
REMARK   3 EM IMAGE RECONSTRUCTION STATISTICS                                   
REMARK   3   NOMINAL PIXEL SIZE (ANGSTROMS)    : NULL                           
REMARK   3   ACTUAL PIXEL SIZE  (ANGSTROMS)    : NULL                           
REMARK   3   EFFECTIVE RESOLUTION (ANGSTROMS)  : 4.000                          
REMARK   3   NUMBER OF PARTICLES               : 7800                           
REMARK   3   CTF CORRECTION METHOD             : PHASE FLIPPING AND AMPLITUDE   
REMARK   3                                       CORRECTION                     
REMARK   3                                                                      
REMARK   3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL                    
REMARK   3                                                                      
REMARK   3 OTHER DETAILS: NULL                                                  
REMARK   4                                                                      
REMARK   4 6N9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-18.                  
REMARK 100 THE DEPOSITION ID IS D_1000238343.                                   
REMARK 245                                                                      
REMARK 245 EXPERIMENTAL DETAILS                                                 
REMARK 245   RECONSTRUCTION METHOD          : HELICAL                           
REMARK 245   SPECIMEN TYPE                  : NULL                              
REMARK 245                                                                      
REMARK 245 ELECTRON MICROSCOPE SAMPLE                                           
REMARK 245   SAMPLE TYPE                    : HELICAL ARRAY                     
REMARK 245   PARTICLE TYPE                  : HELICAL                           
REMARK 245   NAME OF SAMPLE                 : NON-STRUCTURAL PROTEIN 1          
REMARK 245                                    (TUBULE)                          
REMARK 245   SAMPLE CONCENTRATION (MG ML-1) : NULL                              
REMARK 245   SAMPLE SUPPORT DETAILS         : NULL                              
REMARK 245   SAMPLE VITRIFICATION DETAILS   : NULL                              
REMARK 245   SAMPLE BUFFER                  : NULL                              
REMARK 245   PH                             : 7.50                              
REMARK 245   SAMPLE DETAILS                 : NULL                              
REMARK 245                                                                      
REMARK 245 DATA ACQUISITION                                                     
REMARK 245   DATE OF EXPERIMENT                : NULL                           
REMARK 245   NUMBER OF MICROGRAPHS-IMAGES      : 5006                           
REMARK 245   TEMPERATURE (KELVIN)              : NULL                           
REMARK 245   MICROSCOPE MODEL                  : FEI TITAN KRIOS                
REMARK 245   DETECTOR TYPE                     : GATAN K2 QUANTUM (4K X 4K)     
REMARK 245   MINIMUM DEFOCUS (NM)              : NULL                           
REMARK 245   MAXIMUM DEFOCUS (NM)              : NULL                           
REMARK 245   MINIMUM TILT ANGLE (DEGREES)      : NULL                           
REMARK 245   MAXIMUM TILT ANGLE (DEGREES)      : NULL                           
REMARK 245   NOMINAL CS                        : 2.70                           
REMARK 245   IMAGING MODE                      : BRIGHT FIELD                   
REMARK 245   ELECTRON DOSE (ELECTRONS NM**-2)  : 6000.00                        
REMARK 245   ILLUMINATION MODE                 : FLOOD BEAM                     
REMARK 245   NOMINAL MAGNIFICATION             : NULL                           
REMARK 245   CALIBRATED MAGNIFICATION          : NULL                           
REMARK 245   SOURCE                            : FIELD EMISSION GUN             
REMARK 245   ACCELERATION VOLTAGE (KV)         : 300                            
REMARK 245   IMAGING DETAILS                   : NULL                           
REMARK 247                                                                      
REMARK 247 ELECTRON MICROSCOPY                                                  
REMARK 247  THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON          
REMARK 247  MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE              
REMARK 247  THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES           
REMARK 247  ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION         
REMARK 247  OF THE STRUCTURE FACTORS.                                           
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TRP A  28       99.15    -69.85                                   
REMARK 500    ASN A  40      -19.78     70.83                                   
REMARK 500    GLN A 124       43.43    -97.30                                   
REMARK 500    SER A 125     -167.68    -69.93                                   
REMARK 500    ALA A 126       73.88     59.65                                   
REMARK 500    LEU A 127     -175.61    -66.04                                   
REMARK 500    VAL A 128       39.33    -98.35                                   
REMARK 500    ASN A 129      157.92    -45.86                                   
REMARK 500    LYS A 150     -159.22    -90.05                                   
REMARK 500    THR A 204      122.77    -26.58                                   
REMARK 500    PHE A 272       70.80     49.88                                   
REMARK 500    THR A 286      -63.80    -93.65                                   
REMARK 500    ARG A 388       62.34     63.37                                   
REMARK 500    THR A 406       71.18     56.64                                   
REMARK 500    ARG A 471     -169.66    -77.39                                   
REMARK 500    PRO A 531       48.44    -91.21                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                         
REMARK 500                                                                      
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH          
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED           
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND               
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                  
REMARK 500                                 MODEL     OMEGA                      
REMARK 500 ASN A  129     SER A  130                 -138.60                    
REMARK 500 ASN A  203     THR A  204                 -147.62                    
REMARK 500 GLU A  255     GLU A  256                 -146.08                    
REMARK 500 THR A  406     GLY A  407                 -147.03                    
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: EMD-0383   RELATED DB: EMDB                              
REMARK 900 ATOMIC STRUCTURE OF NON-STRUCTURAL PROTEIN 1 OF BLUETONGUE VIRUS     
DBREF  6N9Y A    1   552  UNP    L7WU69   L7WU69_9REOV     1    552             
SEQRES   1 A  552  MET GLU ARG PHE LEU ARG LYS TYR ASN ILE SER GLY ASP          
SEQRES   2 A  552  TYR ALA ASN ALA THR ARG THR PHE LEU ALA ILE SER PRO          
SEQRES   3 A  552  GLN TRP THR CYS SER HIS LEU LYS ARG ASN CYS LEU PHE          
SEQRES   4 A  552  ASN GLY MET CYS ALA LYS GLN ASN PHE GLU ARG ALA MET          
SEQRES   5 A  552  ILE ALA ALA THR ASP ALA GLU GLU PRO ALA LYS ALA TYR          
SEQRES   6 A  552  ARG LEU VAL GLU LEU ALA LYS GLU ALA MET TYR ASP ARG          
SEQRES   7 A  552  GLU THR VAL TRP LEU GLN CYS PHE LYS SER PHE SER GLN          
SEQRES   8 A  552  PRO TYR GLU GLU ASP ILE GLU GLY LYS MET LYS ARG CYS          
SEQRES   9 A  552  GLY ALA GLN LEU LEU GLU ASP TYR ARG LYS ASN GLY MET          
SEQRES  10 A  552  MET ASP GLU ALA VAL LYS GLN SER ALA LEU VAL ASN SER          
SEQRES  11 A  552  GLU ARG VAL ARG LEU ASP ASP SER LEU SER ALA MET PRO          
SEQRES  12 A  552  TYR ILE TYR VAL PRO ILE LYS GLU GLY GLN ILE VAL ASN          
SEQRES  13 A  552  PRO THR PHE ILE SER ARG TYR ARG GLN ILE ALA TYR TYR          
SEQRES  14 A  552  PHE TYR SER PRO ASN LEU ALA ASP ASP TRP ILE ASP PRO          
SEQRES  15 A  552  ASN LEU PHE GLY ILE ARG GLY GLN HIS ASN GLN ILE LYS          
SEQRES  16 A  552  ARG GLU ILE GLU ARG GLN VAL ASN THR CYS PRO TYR THR          
SEQRES  17 A  552  GLY TYR LYS GLY ARG VAL LEU GLN VAL MET PHE LEU PRO          
SEQRES  18 A  552  ILE GLN LEU ILE ASN PHE LEU ARG MET ASP ASP PHE ALA          
SEQRES  19 A  552  LYS HIS PHE ASN ARG TYR ALA SER MET ALA ILE GLN GLN          
SEQRES  20 A  552  TYR LEU ARG VAL GLY TYR ALA GLU GLU VAL ARG TYR VAL          
SEQRES  21 A  552  GLN GLN LEU PHE GLY LYS ILE PRO THR GLY GLU PHE PRO          
SEQRES  22 A  552  LEU HIS HIS MET MET LEU MET ARG ARG ASP PHE PRO THR          
SEQRES  23 A  552  ARG ASP ARG SER ILE VAL GLU ALA ARG VAL ARG ARG SER          
SEQRES  24 A  552  GLY ASP GLU ASN TRP GLN SER TRP LEU LEU PRO MET ILE          
SEQRES  25 A  552  ILE VAL ARG GLU GLY LEU ASP HIS GLN ASP ARG TRP GLU          
SEQRES  26 A  552  TRP LEU ILE ASP TYR MET ASP ARG LYS HIS THR CYS GLN          
SEQRES  27 A  552  LEU CYS TYR LEU LYS HIS SER LYS GLN ILE PRO THR CYS          
SEQRES  28 A  552  GLY VAL ILE ASP VAL ARG ALA SER GLU LEU THR GLY CYS          
SEQRES  29 A  552  SER PRO PHE LYS THR VAL LYS ILE GLU GLU HIS VAL GLY          
SEQRES  30 A  552  ASN ASN SER VAL PHE GLU THR LYS LEU VAL ARG ASP GLU          
SEQRES  31 A  552  GLN ILE GLY ARG ILE GLY ASP HIS TYR TYR THR THR ASN          
SEQRES  32 A  552  CYS TYR THR GLY ALA GLU ALA LEU ILE THR THR ALA ILE          
SEQRES  33 A  552  HIS ILE HIS ARG TRP ILE ARG GLY CYS GLY ILE TRP ASN          
SEQRES  34 A  552  ASP GLU GLY TRP ARG GLU GLY ILE PHE MET LEU GLY ARG          
SEQRES  35 A  552  VAL LEU LEU ARG TRP GLU LEU THR LYS ALA GLN ARG SER          
SEQRES  36 A  552  ALA LEU LEU ARG LEU PHE CYS PHE VAL CYS TYR GLY TYR          
SEQRES  37 A  552  ALA PRO ARG ALA ASP GLY THR ILE PRO ASP TRP ASN ASN          
SEQRES  38 A  552  LEU GLY SER PHE LEU ASP THR ILE LEU LYS GLY PRO GLU          
SEQRES  39 A  552  LEU SER GLU ASP GLU ASP GLU ARG ALA TYR ALA THR MET          
SEQRES  40 A  552  PHE GLU MET VAL ARG CYS ILE ILE THR LEU CYS TYR ALA          
SEQRES  41 A  552  GLU LYS VAL HIS PHE ALA GLY PHE ALA ALA PRO ALA CYS          
SEQRES  42 A  552  GLU SER GLY GLU VAL ILE ASN LEU ALA ALA ARG MET SER          
SEQRES  43 A  552  GLN MET ARG MET GLU TYR                                      
HELIX    1 AA1 MET A    1  ASN A    9  1                                   9    
HELIX    2 AA2 SER A   11  SER A   25  1                                  15    
HELIX    3 AA3 LYS A   34  LEU A   38  5                                   5    
HELIX    4 AA4 ASN A   47  ALA A   55  1                                   9    
HELIX    5 AA5 GLU A   60  GLU A   73  1                                  14    
HELIX    6 AA6 ASP A   77  GLN A   91  1                                  15    
HELIX    7 AA7 ASP A   96  ASN A  115  1                                  20    
HELIX    8 AA8 GLY A  116  LYS A  123  1                                   8    
HELIX    9 AA9 ALA A  141  TYR A  146  5                                   6    
HELIX   10 AB1 LEU A  184  VAL A  202  1                                  19    
HELIX   11 AB2 LEU A  224  ARG A  229  1                                   6    
HELIX   12 AB3 MET A  230  LEU A  249  1                                  20    
HELIX   13 AB4 GLU A  256  GLY A  265  1                                  10    
HELIX   14 AB5 LEU A  274  LEU A  279  1                                   6    
HELIX   15 AB6 SER A  290  ARG A  297  1                                   8    
HELIX   16 AB7 ASN A  303  TRP A  307  5                                   5    
HELIX   17 AB8 MET A  311  LEU A  318  1                                   8    
HELIX   18 AB9 ARG A  323  LYS A  334  1                                  12    
HELIX   19 AC1 GLN A  338  HIS A  344  1                                   7    
HELIX   20 AC2 ASP A  355  THR A  362  1                                   8    
HELIX   21 AC3 ALA A  408  ILE A  422  1                                  15    
HELIX   22 AC4 ASN A  429  GLU A  431  5                                   3    
HELIX   23 AC5 GLY A  432  TRP A  447  1                                  16    
HELIX   24 AC6 THR A  450  CYS A  465  1                                  16    
HELIX   25 AC7 ASN A  481  LYS A  491  1                                  11    
HELIX   26 AC8 SER A  496  TYR A  519  1                                  24    
HELIX   27 AC9 SER A  535  MET A  550  1                                  16    
SHEET    1 AA1 2 LEU A 139  SER A 140  0                                        
SHEET    2 AA1 2 LEU A 309  PRO A 310 -1  O  LEU A 309   N  SER A 140           
SHEET    1 AA2 2 VAL A 147  ILE A 149  0                                        
SHEET    2 AA2 2 ASP A 178  ILE A 180 -1  O  ASP A 178   N  ILE A 149           
SHEET    1 AA3 3 PHE A 159  ARG A 162  0                                        
SHEET    2 AA3 3 ALA A 167  TYR A 171 -1  O  TYR A 168   N  SER A 161           
SHEET    3 AA3 3 MET A 218  PRO A 221  1  O  LEU A 220   N  TYR A 169           
SHEET    1 AA4 4 THR A 350  ILE A 354  0                                        
SHEET    2 AA4 4 PHE A 367  HIS A 375 -1  O  VAL A 370   N  CYS A 351           
SHEET    3 AA4 4 HIS A 398  ASN A 403 -1  O  THR A 401   N  LYS A 371           
SHEET    4 AA4 4 GLU A 390  ILE A 395 -1  N  GLY A 393   O  TYR A 400           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000