HEADER VIRAL PROTEIN 05-DEC-18 6NAE TITLE CRYSTAL STRUCTURE OF EBOLA ZAIRE GP PROTEIN WITH BOUND ARN0074898 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN,ENVELOPE GLYCOPROTEIN,ENVELOPE COMPND 3 GLYCOPROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: EBZAA.19907.A.HE11,EBZAA.19907.A.HE11,EBZAA.19907.A.HE11, COMPND 6 EBZAA.19907.A.HE11,EBZAA.19907.A.HE11,EBZAA.19907.A.HE11, COMPND 7 EBZAA.19907.A.HE11,EBZAA.19907.A.HE11,EBZAA.19907.A.HE11; COMPND 8 SYNONYM: GP1,2,GP,GP1,2,GP; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: ENVELOPE GLYCOPROTEIN; COMPND 13 CHAIN: B; COMPND 14 SYNONYM: GP1,2,GP; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZAIRE EBOLAVIRUS (STRAIN MAYINGA-76); SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 128952; SOURCE 5 STRAIN: MAYINGA-76; SOURCE 6 GENE: GP; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HEK-293; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: EBZAA.19907.A.HE11; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: ZAIRE EBOLAVIRUS (STRAIN MAYINGA-76); SOURCE 14 ORGANISM_COMMON: ZEBOV; SOURCE 15 ORGANISM_TAXID: 128952; SOURCE 16 STRAIN: MAYINGA-76; SOURCE 17 GENE: GP; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: HEK-293; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: EBZAA.19907.A.HE11 KEYWDS SSGCID, EBOLA ZAIRE, GLYCOPROTEIN, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 11-OCT-23 6NAE 1 HETSYN LINK REVDAT 4 29-JUL-20 6NAE 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 01-JUL-20 6NAE 1 JRNL REVDAT 2 25-DEC-19 6NAE 1 JRNL REVDAT 1 11-DEC-19 6NAE 0 JRNL AUTH M.B.PLEWE,N.V.SOKOLOVA,V.R.GANTLA,E.R.BROWN,S.NAIK,A.FETSKO, JRNL AUTH 2 D.D.LORIMER,D.M.DRANOW,H.SMUTNEY,J.BULLEN,R.SIDHU,A.MASTER, JRNL AUTH 3 J.WANG,E.A.KALLEL,L.ZHANG,B.KALVERAM,A.N.FREIBERG,G.HENKEL, JRNL AUTH 4 K.MCCORMACK JRNL TITL DISCOVERY OF ADAMANTANE CARBOXAMIDES AS EBOLA VIRUS CELL JRNL TITL 2 ENTRY AND GLYCOPROTEIN INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 11 1160 2020 JRNL REFN ISSN 1948-5875 JRNL PMID 32550996 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00025 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.310 REMARK 3 FREE R VALUE TEST SET COUNT : 2076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5617 - 6.7767 1.00 1317 127 0.2262 0.2390 REMARK 3 2 6.7767 - 5.3810 1.00 1241 128 0.2042 0.2918 REMARK 3 3 5.3810 - 4.7014 1.00 1227 136 0.1822 0.2283 REMARK 3 4 4.7014 - 4.2718 1.00 1203 147 0.1526 0.1748 REMARK 3 5 4.2718 - 3.9658 1.00 1212 137 0.1581 0.2151 REMARK 3 6 3.9658 - 3.7320 1.00 1194 141 0.1763 0.2122 REMARK 3 7 3.7320 - 3.5452 1.00 1190 143 0.1826 0.2085 REMARK 3 8 3.5452 - 3.3909 1.00 1207 124 0.1914 0.2440 REMARK 3 9 3.3909 - 3.2604 1.00 1171 156 0.2059 0.2547 REMARK 3 10 3.2604 - 3.1479 1.00 1175 147 0.2169 0.3160 REMARK 3 11 3.1479 - 3.0495 1.00 1176 152 0.2206 0.3067 REMARK 3 12 3.0495 - 2.9623 1.00 1171 146 0.2193 0.2934 REMARK 3 13 2.9623 - 2.8844 1.00 1193 127 0.1998 0.2584 REMARK 3 14 2.8844 - 2.8140 1.00 1202 128 0.2167 0.3440 REMARK 3 15 2.8140 - 2.7500 1.00 1184 137 0.2164 0.2769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20154 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 49.554 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.409 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.54 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6F5U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EBZAA.19907.A.HE11.PD38326 AT 6.01 MG REMARK 280 /ML AND MIXED 1:1 WITH AN OPT SCREEN BASED ON JCSG+(B8): 11 % (W/ REMARK 280 V) PEG-8000, 0.1 M TRIS BASE/ HCL, PH = 7.1, 200 MM MGCL2, REMARK 280 CRYSTALS WERE SOAKED WITH 1 MM ARN0074898 FOR 4 HOURS AND REMARK 280 CRYOPROTECTED WITH 20% GLYEROL. TRAY: 303411B4, PUCK: JVO4-3, PH REMARK 280 7.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 56.62500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.69246 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 102.40333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 56.62500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.69246 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 102.40333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 56.62500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.69246 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 102.40333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 56.62500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.69246 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 102.40333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 56.62500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.69246 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 102.40333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 56.62500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.69246 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 102.40333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.38492 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 204.80667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 65.38492 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 204.80667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 65.38492 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 204.80667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 65.38492 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 204.80667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 65.38492 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 204.80667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 65.38492 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 204.80667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 38220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -56.62500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 98.07738 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -113.25000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 28 REMARK 465 THR A 29 REMARK 465 GLY A 30 REMARK 465 ARG A 31 REMARK 465 GLN A 188 REMARK 465 ALA A 189 REMARK 465 LYS A 190 REMARK 465 LYS A 191 REMARK 465 ASP A 192 REMARK 465 PHE A 193 REMARK 465 PHE A 194 REMARK 465 SER A 195 REMARK 465 SER A 196 REMARK 465 HIS A 197 REMARK 465 PRO A 198 REMARK 465 LEU A 199 REMARK 465 ARG A 200 REMARK 465 GLU A 201 REMARK 465 PRO A 202 REMARK 465 VAL A 203 REMARK 465 ASN A 204 REMARK 465 ALA A 205 REMARK 465 THR A 206 REMARK 465 GLU A 207 REMARK 465 ASP A 208 REMARK 465 PRO A 209 REMARK 465 SER A 210 REMARK 465 ILE A 281 REMARK 465 ASP A 282 REMARK 465 THR A 283 REMARK 465 THR A 284 REMARK 465 ILE A 285 REMARK 465 GLY A 286 REMARK 465 GLU A 287 REMARK 465 THR A 293 REMARK 465 LYS A 294 REMARK 465 LYS A 295 REMARK 465 ASN A 296 REMARK 465 LEU A 297 REMARK 465 THR A 298 REMARK 465 ARG A 299 REMARK 465 LYS A 300 REMARK 465 ILE A 301 REMARK 465 ARG A 302 REMARK 465 SER A 303 REMARK 465 GLU A 304 REMARK 465 GLU A 305 REMARK 465 LEU A 306 REMARK 465 SER A 307 REMARK 465 PHE A 308 REMARK 465 THR A 309 REMARK 465 VAL A 310 REMARK 465 VAL A 311 REMARK 465 SER A 312 REMARK 465 THR A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 GLN A 316 REMARK 465 ASP A 317 REMARK 465 THR A 318 REMARK 465 GLY A 319 REMARK 465 GLU A 320 REMARK 465 GLU A 321 REMARK 465 SER A 322 REMARK 465 ALA A 323 REMARK 465 SER A 324 REMARK 465 SER A 325 REMARK 465 GLY A 326 REMARK 465 LYS A 327 REMARK 465 LEU A 328 REMARK 465 GLY A 329 REMARK 465 LEU A 330 REMARK 465 ILE A 331 REMARK 465 THR A 332 REMARK 465 ASN A 333 REMARK 465 THR A 334 REMARK 465 ILE A 335 REMARK 465 ALA A 336 REMARK 465 GLY A 337 REMARK 465 VAL A 338 REMARK 465 ALA A 339 REMARK 465 GLY A 340 REMARK 465 LEU A 341 REMARK 465 ILE A 342 REMARK 465 THR A 343 REMARK 465 GLY A 344 REMARK 465 GLY A 345 REMARK 465 ARG A 346 REMARK 465 ARG A 347 REMARK 465 THR A 348 REMARK 465 ARG A 349 REMARK 465 ARG A 350 REMARK 465 ILE B 619 REMARK 465 THR B 620 REMARK 465 ASP B 621 REMARK 465 LYS B 622 REMARK 465 ILE B 623 REMARK 465 ASP B 624 REMARK 465 GLN B 625 REMARK 465 ILE B 626 REMARK 465 ILE B 627 REMARK 465 HIS B 628 REMARK 465 ASP B 629 REMARK 465 PHE B 630 REMARK 465 VAL B 631 REMARK 465 ASP B 632 REMARK 465 GLY B 633 REMARK 465 SER B 634 REMARK 465 GLY B 635 REMARK 465 TYR B 636 REMARK 465 ILE B 637 REMARK 465 PRO B 638 REMARK 465 GLU B 639 REMARK 465 ALA B 640 REMARK 465 PRO B 641 REMARK 465 ARG B 642 REMARK 465 ASP B 643 REMARK 465 GLY B 644 REMARK 465 GLN B 645 REMARK 465 ALA B 646 REMARK 465 TYR B 647 REMARK 465 VAL B 648 REMARK 465 ARG B 649 REMARK 465 LYS B 650 REMARK 465 ASP B 651 REMARK 465 GLY B 652 REMARK 465 GLU B 653 REMARK 465 TRP B 654 REMARK 465 VAL B 655 REMARK 465 LEU B 656 REMARK 465 LEU B 657 REMARK 465 SER B 658 REMARK 465 THR B 659 REMARK 465 PHE B 660 REMARK 465 LEU B 661 REMARK 465 GLY B 662 REMARK 465 THR B 663 REMARK 465 HIS B 664 REMARK 465 HIS B 665 REMARK 465 HIS B 666 REMARK 465 HIS B 667 REMARK 465 HIS B 668 REMARK 465 HIS B 669 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 SER A 211 OG REMARK 470 TYR A 214 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 GLN A 255 CG CD OE1 NE2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 ASN A 278 CG OD1 ND2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 GLU B 502 CG CD OE1 OE2 REMARK 470 VAL B 505 CG1 CG2 REMARK 470 ASP B 522 CG OD1 OD2 REMARK 470 LEU B 604 CG CD1 CD2 REMARK 470 TRP B 615 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 615 CZ3 CH2 REMARK 470 THR B 616 OG1 CG2 REMARK 470 LYS B 617 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 162 -163.66 -108.83 REMARK 500 ARG A 164 18.88 59.93 REMARK 500 THR A 269 -161.67 -118.17 REMARK 500 GLU B 523 -111.22 52.27 REMARK 500 ILE B 527 99.19 -67.13 REMARK 500 LEU B 604 -5.03 69.87 REMARK 500 CYS B 609 53.53 -95.52 REMARK 500 PRO B 612 37.40 -89.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EBZAA.19907.A RELATED DB: TARGETTRACK DBREF 6NAE A 32 312 UNP Q05320 VGP_EBOZM 32 312 DBREF 6NAE A 313 350 UNP Q05320 VGP_EBOZM 464 501 DBREF 6NAE A 351 357 PDB 6NAE 6NAE 351 357 DBREF 6NAE B 502 632 UNP Q05320 VGP_EBOZM 502 632 SEQADV 6NAE GLU A 28 UNP Q05320 EXPRESSION TAG SEQADV 6NAE THR A 29 UNP Q05320 EXPRESSION TAG SEQADV 6NAE GLY A 30 UNP Q05320 EXPRESSION TAG SEQADV 6NAE ARG A 31 UNP Q05320 EXPRESSION TAG SEQADV 6NAE ALA A 42 UNP Q05320 THR 42 ENGINEERED MUTATION SEQADV 6NAE ALA B 613 UNP Q05320 HIS 613 ENGINEERED MUTATION SEQADV 6NAE GLY B 633 UNP Q05320 EXPRESSION TAG SEQADV 6NAE SER B 634 UNP Q05320 EXPRESSION TAG SEQADV 6NAE GLY B 635 UNP Q05320 EXPRESSION TAG SEQADV 6NAE TYR B 636 UNP Q05320 EXPRESSION TAG SEQADV 6NAE ILE B 637 UNP Q05320 EXPRESSION TAG SEQADV 6NAE PRO B 638 UNP Q05320 EXPRESSION TAG SEQADV 6NAE GLU B 639 UNP Q05320 EXPRESSION TAG SEQADV 6NAE ALA B 640 UNP Q05320 EXPRESSION TAG SEQADV 6NAE PRO B 641 UNP Q05320 EXPRESSION TAG SEQADV 6NAE ARG B 642 UNP Q05320 EXPRESSION TAG SEQADV 6NAE ASP B 643 UNP Q05320 EXPRESSION TAG SEQADV 6NAE GLY B 644 UNP Q05320 EXPRESSION TAG SEQADV 6NAE GLN B 645 UNP Q05320 EXPRESSION TAG SEQADV 6NAE ALA B 646 UNP Q05320 EXPRESSION TAG SEQADV 6NAE TYR B 647 UNP Q05320 EXPRESSION TAG SEQADV 6NAE VAL B 648 UNP Q05320 EXPRESSION TAG SEQADV 6NAE ARG B 649 UNP Q05320 EXPRESSION TAG SEQADV 6NAE LYS B 650 UNP Q05320 EXPRESSION TAG SEQADV 6NAE ASP B 651 UNP Q05320 EXPRESSION TAG SEQADV 6NAE GLY B 652 UNP Q05320 EXPRESSION TAG SEQADV 6NAE GLU B 653 UNP Q05320 EXPRESSION TAG SEQADV 6NAE TRP B 654 UNP Q05320 EXPRESSION TAG SEQADV 6NAE VAL B 655 UNP Q05320 EXPRESSION TAG SEQADV 6NAE LEU B 656 UNP Q05320 EXPRESSION TAG SEQADV 6NAE LEU B 657 UNP Q05320 EXPRESSION TAG SEQADV 6NAE SER B 658 UNP Q05320 EXPRESSION TAG SEQADV 6NAE THR B 659 UNP Q05320 EXPRESSION TAG SEQADV 6NAE PHE B 660 UNP Q05320 EXPRESSION TAG SEQADV 6NAE LEU B 661 UNP Q05320 EXPRESSION TAG SEQADV 6NAE GLY B 662 UNP Q05320 EXPRESSION TAG SEQADV 6NAE THR B 663 UNP Q05320 EXPRESSION TAG SEQADV 6NAE HIS B 664 UNP Q05320 EXPRESSION TAG SEQADV 6NAE HIS B 665 UNP Q05320 EXPRESSION TAG SEQADV 6NAE HIS B 666 UNP Q05320 EXPRESSION TAG SEQADV 6NAE HIS B 667 UNP Q05320 EXPRESSION TAG SEQADV 6NAE HIS B 668 UNP Q05320 EXPRESSION TAG SEQADV 6NAE HIS B 669 UNP Q05320 EXPRESSION TAG SEQRES 1 A 330 GLU THR GLY ARG SER ILE PRO LEU GLY VAL ILE HIS ASN SEQRES 2 A 330 SER ALA LEU GLN VAL SER ASP VAL ASP LYS LEU VAL CYS SEQRES 3 A 330 ARG ASP LYS LEU SER SER THR ASN GLN LEU ARG SER VAL SEQRES 4 A 330 GLY LEU ASN LEU GLU GLY ASN GLY VAL ALA THR ASP VAL SEQRES 5 A 330 PRO SER ALA THR LYS ARG TRP GLY PHE ARG SER GLY VAL SEQRES 6 A 330 PRO PRO LYS VAL VAL ASN TYR GLU ALA GLY GLU TRP ALA SEQRES 7 A 330 GLU ASN CYS TYR ASN LEU GLU ILE LYS LYS PRO ASP GLY SEQRES 8 A 330 SER GLU CYS LEU PRO ALA ALA PRO ASP GLY ILE ARG GLY SEQRES 9 A 330 PHE PRO ARG CYS ARG TYR VAL HIS LYS VAL SER GLY THR SEQRES 10 A 330 GLY PRO CYS ALA GLY ASP PHE ALA PHE HIS LYS GLU GLY SEQRES 11 A 330 ALA PHE PHE LEU TYR ASP ARG LEU ALA SER THR VAL ILE SEQRES 12 A 330 TYR ARG GLY THR THR PHE ALA GLU GLY VAL VAL ALA PHE SEQRES 13 A 330 LEU ILE LEU PRO GLN ALA LYS LYS ASP PHE PHE SER SER SEQRES 14 A 330 HIS PRO LEU ARG GLU PRO VAL ASN ALA THR GLU ASP PRO SEQRES 15 A 330 SER SER GLY TYR TYR SER THR THR ILE ARG TYR GLN ALA SEQRES 16 A 330 THR GLY PHE GLY THR ASN GLU THR GLU TYR LEU PHE GLU SEQRES 17 A 330 VAL ASP ASN LEU THR TYR VAL GLN LEU GLU SER ARG PHE SEQRES 18 A 330 THR PRO GLN PHE LEU LEU GLN LEU ASN GLU THR ILE TYR SEQRES 19 A 330 THR SER GLY LYS ARG SER ASN THR THR GLY LYS LEU ILE SEQRES 20 A 330 TRP LYS VAL ASN PRO GLU ILE ASP THR THR ILE GLY GLU SEQRES 21 A 330 TRP ALA PHE TRP GLU THR LYS LYS ASN LEU THR ARG LYS SEQRES 22 A 330 ILE ARG SER GLU GLU LEU SER PHE THR VAL VAL SER THR SEQRES 23 A 330 HIS HIS GLN ASP THR GLY GLU GLU SER ALA SER SER GLY SEQRES 24 A 330 LYS LEU GLY LEU ILE THR ASN THR ILE ALA GLY VAL ALA SEQRES 25 A 330 GLY LEU ILE THR GLY GLY ARG ARG THR ARG ARG UNK UNK SEQRES 26 A 330 UNK UNK UNK UNK UNK SEQRES 1 B 168 GLU ALA ILE VAL ASN ALA GLN PRO LYS CYS ASN PRO ASN SEQRES 2 B 168 LEU HIS TYR TRP THR THR GLN ASP GLU GLY ALA ALA ILE SEQRES 3 B 168 GLY LEU ALA TRP ILE PRO TYR PHE GLY PRO ALA ALA GLU SEQRES 4 B 168 GLY ILE TYR ILE GLU GLY LEU MET HIS ASN GLN ASP GLY SEQRES 5 B 168 LEU ILE CYS GLY LEU ARG GLN LEU ALA ASN GLU THR THR SEQRES 6 B 168 GLN ALA LEU GLN LEU PHE LEU ARG ALA THR THR GLU LEU SEQRES 7 B 168 ARG THR PHE SER ILE LEU ASN ARG LYS ALA ILE ASP PHE SEQRES 8 B 168 LEU LEU GLN ARG TRP GLY GLY THR CYS HIS ILE LEU GLY SEQRES 9 B 168 PRO ASP CYS CYS ILE GLU PRO ALA ASP TRP THR LYS ASN SEQRES 10 B 168 ILE THR ASP LYS ILE ASP GLN ILE ILE HIS ASP PHE VAL SEQRES 11 B 168 ASP GLY SER GLY TYR ILE PRO GLU ALA PRO ARG ASP GLY SEQRES 12 B 168 GLN ALA TYR VAL ARG LYS ASP GLY GLU TRP VAL LEU LEU SEQRES 13 B 168 SER THR PHE LEU GLY THR HIS HIS HIS HIS HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET NAG A 604 14 HET GOL A 605 6 HET GOL A 606 6 HET GOL A 607 6 HET KHG A 608 27 HET GOL A 609 6 HET GOL B 706 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETNAM KHG (1S,3R,5R,7S)-N-(TRANS-4-AMINOCYCLOHEXYL)-3-METHYL-5- HETNAM 2 KHG PHENYLTRICYCLO[3.3.1.1~3,7~]DECANE-1-CARBOXAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 8 GOL 5(C3 H8 O3) FORMUL 11 KHG C24 H34 N2 O FORMUL 14 HOH *88(H2 O) HELIX 1 AA1 SER A 59 ASN A 61 5 3 HELIX 2 AA2 GLU A 71 GLY A 74 5 4 HELIX 3 AA3 ASP A 78 LYS A 84 1 7 HELIX 4 AA4 THR A 249 SER A 263 1 15 HELIX 5 AA5 ALA B 538 ILE B 542 5 5 HELIX 6 AA6 ASN B 550 ASP B 552 5 3 HELIX 7 AA7 GLY B 553 THR B 576 1 24 HELIX 8 AA8 SER B 583 GLY B 598 1 16 HELIX 9 AA9 PRO B 612 LYS B 617 1 6 SHEET 1 AA1 2 GLY A 36 HIS A 39 0 SHEET 2 AA1 2 ALA A 42 VAL A 45 -1 O GLN A 44 N VAL A 37 SHEET 1 AA2 6 LEU A 63 ASN A 69 0 SHEET 2 AA2 6 ALA A 177 ILE A 185 -1 O ALA A 182 N VAL A 66 SHEET 3 AA2 6 PHE A 159 LEU A 161 -1 N LEU A 161 O ALA A 177 SHEET 4 AA2 6 LEU A 165 SER A 167 -1 O SER A 167 N PHE A 160 SHEET 5 AA2 6 VAL A 96 ASN A 98 -1 N VAL A 97 O ALA A 166 SHEET 6 AA2 6 ARG B 580 THR B 581 1 O THR B 581 N VAL A 96 SHEET 1 AA3 2 TRP A 86 ARG A 89 0 SHEET 2 AA3 2 PHE A 151 HIS A 154 -1 O PHE A 153 N GLY A 87 SHEET 1 AA4 3 GLY A 102 GLU A 103 0 SHEET 2 AA4 3 LEU B 515 THR B 519 -1 O TRP B 518 N GLY A 102 SHEET 3 AA4 3 ILE B 544 MET B 548 -1 O GLY B 546 N TYR B 517 SHEET 1 AA5 7 ALA A 105 LYS A 114 0 SHEET 2 AA5 7 CYS A 135 THR A 144 1 O HIS A 139 N CYS A 108 SHEET 3 AA5 7 THR A 216 THR A 223 1 O ILE A 218 N VAL A 138 SHEET 4 AA5 7 GLU A 231 ASP A 237 -1 O GLU A 235 N ARG A 219 SHEET 5 AA5 7 THR A 240 GLN A 243 -1 O VAL A 242 N PHE A 234 SHEET 6 AA5 7 LEU A 273 TRP A 275 1 O LEU A 273 N TYR A 241 SHEET 7 AA5 7 UNK A 352 UNK A 354 1 O UNK A 352 N ILE A 274 SSBOND 1 CYS A 53 CYS B 609 1555 1555 2.03 SSBOND 2 CYS A 108 CYS A 135 1555 1555 2.03 SSBOND 3 CYS A 121 CYS A 147 1555 1555 2.03 SSBOND 4 CYS B 511 CYS B 556 1555 1555 2.04 SSBOND 5 CYS B 601 CYS B 608 1555 1555 2.03 LINK ND2 ASN A 228 C1 NAG A 604 1555 1555 1.44 LINK ND2 ASN A 238 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN A 257 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 268 C1 NAG A 603 1555 1555 1.44 LINK ND2 ASN B 563 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.47 CRYST1 113.250 113.250 307.210 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008830 0.005098 0.000000 0.00000 SCALE2 0.000000 0.010196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003255 0.00000