HEADER TRANSFERASE 06-DEC-18 6NB0 TITLE CRYSTAL STRUCTURE OF HISTIDINE KINASE FROM BURKHOLDERIA PHYMATUM TITLE 2 STM815 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BUPHA.01664.A.A1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABURKHOLDERIA PHYMATUM (STRAIN DSM 17167 / SOURCE 3 CIP 108236 / LMG 21445 / STM815); SOURCE 4 ORGANISM_TAXID: 391038; SOURCE 5 STRAIN: DSM 17167 / CIP 108236 / LMG 21445 / STM815; SOURCE 6 GENE: BPHY_4385; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, BURKHOLDERIA PHYMATUM, HISTIDINE KINASE, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 13-MAR-24 6NB0 1 REMARK REVDAT 1 19-DEC-18 6NB0 0 JRNL AUTH J.ABENDROTH,D.C.CONRADY,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF HISTIDINE KINASE FROM BURKHOLDERIA JRNL TITL 2 PHYMATUM STM815 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3304 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3816 - 4.0921 1.00 2726 143 0.2002 0.2331 REMARK 3 2 4.0921 - 3.2485 0.99 2614 129 0.1790 0.2189 REMARK 3 3 3.2485 - 2.8380 1.00 2598 134 0.1803 0.2062 REMARK 3 4 2.8380 - 2.5786 1.00 2536 144 0.1805 0.2113 REMARK 3 5 2.5786 - 2.3938 1.00 2564 138 0.1923 0.2001 REMARK 3 6 2.3938 - 2.2527 0.99 2546 135 0.1979 0.2279 REMARK 3 7 2.2527 - 2.1399 1.00 2514 152 0.2049 0.2228 REMARK 3 8 2.1399 - 2.0467 1.00 2541 128 0.2037 0.2328 REMARK 3 9 2.0467 - 1.9679 1.00 2578 115 0.2029 0.2523 REMARK 3 10 1.9679 - 1.9000 0.98 2489 127 0.2135 0.2448 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1688 REMARK 3 ANGLE : 0.879 2317 REMARK 3 CHIRALITY : 0.056 281 REMARK 3 PLANARITY : 0.005 306 REMARK 3 DIHEDRAL : 13.688 1046 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9109 4.7690 14.5373 REMARK 3 T TENSOR REMARK 3 T11: 0.2944 T22: 0.3236 REMARK 3 T33: 0.4421 T12: 0.0425 REMARK 3 T13: 0.0848 T23: 0.1311 REMARK 3 L TENSOR REMARK 3 L11: 2.6756 L22: 2.6681 REMARK 3 L33: 2.1907 L12: 2.5416 REMARK 3 L13: -0.3127 L23: -0.5347 REMARK 3 S TENSOR REMARK 3 S11: -0.1610 S12: 0.1007 S13: 0.4446 REMARK 3 S21: 0.2709 S22: 0.3199 S23: 0.6977 REMARK 3 S31: -0.0694 S32: -0.5315 S33: -0.1118 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6875 4.0204 25.2635 REMARK 3 T TENSOR REMARK 3 T11: 1.3758 T22: 0.9531 REMARK 3 T33: 0.7176 T12: 0.4658 REMARK 3 T13: 0.2869 T23: 0.0572 REMARK 3 L TENSOR REMARK 3 L11: 4.8214 L22: 1.5100 REMARK 3 L33: 1.6421 L12: 1.4433 REMARK 3 L13: 2.4626 L23: 0.2441 REMARK 3 S TENSOR REMARK 3 S11: 0.1092 S12: 0.2752 S13: -0.1459 REMARK 3 S21: -0.0019 S22: -0.2585 S23: -0.0683 REMARK 3 S31: -0.3125 S32: -0.0618 S33: -0.0226 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6799 14.9535 9.6678 REMARK 3 T TENSOR REMARK 3 T11: 0.1777 T22: 0.1840 REMARK 3 T33: 0.1861 T12: 0.0329 REMARK 3 T13: 0.0079 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.7455 L22: 3.1561 REMARK 3 L33: 3.2324 L12: 0.6065 REMARK 3 L13: 0.1250 L23: 0.7827 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: -0.0075 S13: 0.0249 REMARK 3 S21: 0.0810 S22: 0.1431 S23: -0.0100 REMARK 3 S31: -0.1205 S32: -0.1326 S33: -0.0872 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0280 21.8672 11.3002 REMARK 3 T TENSOR REMARK 3 T11: 0.2843 T22: 0.2087 REMARK 3 T33: 0.3185 T12: 0.1021 REMARK 3 T13: 0.0625 T23: 0.0553 REMARK 3 L TENSOR REMARK 3 L11: 7.7145 L22: 7.7999 REMARK 3 L33: 7.8649 L12: 0.9820 REMARK 3 L13: -0.0423 L23: 0.7480 REMARK 3 S TENSOR REMARK 3 S11: 0.1992 S12: 0.1137 S13: 0.4478 REMARK 3 S21: 0.2147 S22: 0.3210 S23: 0.4259 REMARK 3 S31: -0.7361 S32: -0.8166 S33: -0.3072 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27087 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 39.373 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 11.48 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.85 REMARK 200 R MERGE FOR SHELL (I) : 0.29900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, PARROT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKU REAGENTS WIZARD 3/4 SCREEN, REMARK 280 CONDITION C2: 24% PEG 1500, 20% GLYCEROL + REMARK 280 BUPHA.01664.A.A1.PW32082 AT 33.15MG/ML. CRYO: DIRECT, TRAY: REMARK 280 224038 D2, PUCK MTZ8-10. PHASING: MOLECULAR DIMENSIONS PACT REMARK 280 SCREEN CONDITION D3: 24% PEG 1500, 100MM MMT BUFFER PH 6.0 + REMARK 280 BUPHA.01664.A.A1.PW32082 AT 33.15MG/ML. THE CRYSTAL WAS SOAKED REMARK 280 FOR 20SEC SOLUTION RESERVOIR + 20% 2.5M SODIUM IODIDE IN REMARK 280 ETHYLENE GLYCOL, AND VITRIFIED IN LIQUID NITROGEN. TRAY 223760 REMARK 280 D3, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.78000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.39000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.39000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 32.39000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 VAL A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 ASN A 15 REMARK 465 GLU A 16 REMARK 465 GLU A 17 REMARK 465 MET A 18 REMARK 465 PRO A 19 REMARK 465 ALA A 20 REMARK 465 TYR A 60 REMARK 465 VAL A 61 REMARK 465 LEU A 62 REMARK 465 ASP A 63 REMARK 465 ARG A 64 REMARK 465 LYS A 65 REMARK 465 ILE A 66 REMARK 465 ASP A 67 REMARK 465 ALA A 68 REMARK 465 LYS A 69 REMARK 465 ASP A 70 REMARK 465 THR A 71 REMARK 465 THR A 72 REMARK 465 ALA A 73 REMARK 465 GLN A 74 REMARK 465 ARG A 75 REMARK 465 ALA A 76 REMARK 465 LEU A 77 REMARK 465 GLU A 78 REMARK 465 GLY A 79 REMARK 465 ILE A 80 REMARK 465 ARG A 81 REMARK 465 ASN A 82 REMARK 465 GLY A 83 REMARK 465 VAL A 84 REMARK 465 ASP A 85 REMARK 465 ALA A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 48 CG CD1 CD2 REMARK 470 SER A 50 OG REMARK 470 LEU A 52 CG CD1 CD2 REMARK 470 ASN A 53 CG OD1 ND2 REMARK 470 ILE A 55 CG1 CG2 CD1 REMARK 470 HIS A 56 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 57 OG REMARK 470 TRP A 58 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 58 CZ3 CH2 REMARK 470 GLN A 86 CG CD OE1 NE2 REMARK 470 GLN A 87 CG CD OE1 NE2 REMARK 470 VAL A 88 CG1 CG2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 LEU A 90 CG CD1 CD2 REMARK 470 LEU A 91 CG CD1 CD2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 ILE A 94 CG1 CG2 CD1 REMARK 470 ASP A 96 CG OD1 OD2 REMARK 470 ARG A 99 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 LEU A 107 CG CD1 CD2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 ASP A 251 CG OD1 OD2 REMARK 470 GLN A 253 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 129 -40.02 -149.38 REMARK 500 ALA A 144 -72.75 -125.85 REMARK 500 ALA A 169 32.46 -96.38 REMARK 500 THR A 184 -111.24 47.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUPHA.01664.A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: BUPHA.01664.A RELATED DB: TARGETTRACK DBREF 6NB0 A 1 266 UNP B2JQF9 B2JQF9_PARP8 1 266 SEQADV 6NB0 MET A -20 UNP B2JQF9 INITIATING METHIONINE SEQADV 6NB0 ALA A -19 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 HIS A -18 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 HIS A -17 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 HIS A -16 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 HIS A -15 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 HIS A -14 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 HIS A -13 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 MET A -12 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 GLY A -11 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 THR A -10 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 LEU A -9 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 GLU A -8 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 ALA A -7 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 GLN A -6 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 THR A -5 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 GLN A -4 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 GLY A -3 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 PRO A -2 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 GLY A -1 UNP B2JQF9 EXPRESSION TAG SEQADV 6NB0 SER A 0 UNP B2JQF9 EXPRESSION TAG SEQRES 1 A 287 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 287 ALA GLN THR GLN GLY PRO GLY SER MET SER ILE VAL THR SEQRES 3 A 287 PRO SER THR PRO SER SER SER GLY SER ASN GLU GLU MET SEQRES 4 A 287 PRO ALA VAL THR GLU ARG THR ALA ARG ARG SER ALA GLU SEQRES 5 A 287 THR ALA LEU PHE MET ARG ASP HIS VAL LEU SER LEU VAL SEQRES 6 A 287 SER HIS ASP LEU ARG SER PRO LEU ASN ALA ILE HIS SER SEQRES 7 A 287 TRP ALA TYR VAL LEU ASP ARG LYS ILE ASP ALA LYS ASP SEQRES 8 A 287 THR THR ALA GLN ARG ALA LEU GLU GLY ILE ARG ASN GLY SEQRES 9 A 287 VAL ASP GLN GLN VAL LYS LEU LEU GLU SER ILE VAL ASP SEQRES 10 A 287 THR THR ARG ALA GLU THR LYS ALA LEU ALA LEU LYS ARG SEQRES 11 A 287 ALA PRO PHE ALA LEU ARG PRO LEU LEU ASP GLU THR ILE SEQRES 12 A 287 GLY ASP VAL ARG GLU GLY LEU ALA ALA ARG ARG GLY ILE SEQRES 13 A 287 VAL LEU ALA LEU ASN THR PRO LEU ALA ALA GLN GLN MET SEQRES 14 A 287 ASP GLY ASP ARG GLU ARG LEU ALA ALA ALA LEU TRP LEU SEQRES 15 A 287 LEU VAL THR PHE ALA VAL GLU ALA SER ALA SER GLY THR SEQRES 16 A 287 THR VAL THR LEU ASP ALA ASP VAL ASP THR ALA THR LEU SEQRES 17 A 287 ARG ALA THR VAL SER TRP GLN ALA THR PRO ALA ALA LEU SEQRES 18 A 287 THR ASP PRO ALA LEU PRO HIS VAL LEU GLU ASN PHE ALA SEQRES 19 A 287 ARG ALA GLN ALA THR HIS PRO ARG GLU ALA GLY ARG ILE SEQRES 20 A 287 SER TRP VAL LEU ALA LEU CYS LYS ARG VAL ALA GLU ALA SEQRES 21 A 287 HIS ASP GLY ALA PHE GLU GLN GLY GLU PHE ALA ASP GLY SEQRES 22 A 287 GLN SER SER THR LEU LYS PHE ARG ALA SER LEU ALA GLY SEQRES 23 A 287 ALA HET GOL A 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *201(H2 O) HELIX 1 AA1 THR A 22 LEU A 48 1 27 HELIX 2 AA2 LEU A 48 SER A 57 1 10 HELIX 3 AA3 GLN A 87 LEU A 105 1 19 HELIX 4 AA4 LEU A 114 LEU A 129 1 16 HELIX 5 AA5 ALA A 130 GLY A 134 5 5 HELIX 6 AA6 ASP A 151 ALA A 169 1 19 HELIX 7 AA7 THR A 196 ASP A 202 5 7 HELIX 8 AA8 GLU A 210 THR A 218 1 9 HELIX 9 AA9 SER A 227 VAL A 229 5 3 HELIX 10 AB1 LEU A 230 HIS A 240 1 11 SHEET 1 AA1 2 ALA A 110 ALA A 113 0 SHEET 2 AA1 2 GLN A 147 GLY A 150 -1 O GLY A 150 N ALA A 110 SHEET 1 AA2 5 VAL A 136 ASN A 140 0 SHEET 2 AA2 5 THR A 175 ASP A 183 1 O LEU A 178 N ALA A 138 SHEET 3 AA2 5 THR A 186 TRP A 193 -1 O THR A 190 N ASP A 179 SHEET 4 AA2 5 SER A 255 SER A 262 -1 O SER A 255 N TRP A 193 SHEET 5 AA2 5 ALA A 243 GLN A 246 -1 N GLU A 245 O LYS A 258 SITE 1 AC1 6 ALA A 195 PRO A 197 PHE A 249 ALA A 250 SITE 2 AC1 6 ASP A 251 HOH A 518 CRYST1 77.600 77.600 97.170 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012887 0.007440 0.000000 0.00000 SCALE2 0.000000 0.014880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010291 0.00000