HEADER IMMUNE SYSTEM 06-DEC-18 6NB8 TITLE CRYSTAL STRUCTURE OF ANTI- SARS-COV HUMAN NEUTRALIZING S230 ANTIBODY TITLE 2 FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: S230 ANTIGEN-BINDING (FAB) FRAGMENT, HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: S230 ANTIGEN-BINDING (FAB) FRAGMENT, LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FAB, CORONAVIRUS, SARS, GLYCOPROTEIN, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, IMMUNE KEYWDS 3 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.J.WALLS,X.XIONG,Y.J.PARK,M.A.TORTORICI,J.SNIJDER,J.QUISPE, AUTHOR 2 E.CAMERONI,R.GOPAL,M.DAI,A.LANZAVECCHIA,M.ZAMBON,F.A.REY,D.CORTI, AUTHOR 3 D.VEESLER,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 4 (SSGCID) REVDAT 6 13-NOV-24 6NB8 1 REMARK REVDAT 5 11-OCT-23 6NB8 1 REMARK REVDAT 4 01-JAN-20 6NB8 1 REMARK REVDAT 3 06-MAR-19 6NB8 1 JRNL REVDAT 2 20-FEB-19 6NB8 1 JRNL REVDAT 1 06-FEB-19 6NB8 0 JRNL AUTH A.C.WALLS,X.XIONG,Y.J.PARK,M.A.TORTORICI,J.SNIJDER,J.QUISPE, JRNL AUTH 2 E.CAMERONI,R.GOPAL,M.DAI,A.LANZAVECCHIA,M.ZAMBON,F.A.REY, JRNL AUTH 3 D.CORTI,D.VEESLER JRNL TITL UNEXPECTED RECEPTOR FUNCTIONAL MIMICRY ELUCIDATES ACTIVATION JRNL TITL 2 OF CORONAVIRUS FUSION. JRNL REF CELL V. 176 1026 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 30712865 JRNL DOI 10.1016/J.CELL.2018.12.028 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 66205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4667 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3442 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : -1.29000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3864 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3398 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5313 ; 1.463 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7968 ; 1.388 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 525 ; 7.377 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;32.555 ;21.925 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;11.758 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.809 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4577 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 842 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1986 ; 1.813 ; 1.678 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1985 ; 1.807 ; 1.676 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2546 ; 2.369 ; 2.524 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2547 ; 2.371 ; 2.527 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1878 ; 2.334 ; 1.980 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1878 ; 2.305 ; 1.980 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2767 ; 2.929 ; 2.837 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4321 ; 4.018 ;21.267 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4199 ; 3.594 ;20.300 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7262 ; 1.451 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 289 ;28.409 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7325 ;14.108 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 127 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5332 -8.8533 3.7571 REMARK 3 T TENSOR REMARK 3 T11: 0.0191 T22: 0.0175 REMARK 3 T33: 0.0003 T12: 0.0008 REMARK 3 T13: 0.0002 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.0247 L22: 0.0307 REMARK 3 L33: 0.0150 L12: 0.0252 REMARK 3 L13: 0.0068 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.0042 S13: 0.0022 REMARK 3 S21: 0.0003 S22: -0.0026 S23: 0.0018 REMARK 3 S31: -0.0012 S32: -0.0031 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 128 H 230 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1227 19.9773 -10.6547 REMARK 3 T TENSOR REMARK 3 T11: 0.0232 T22: 0.0234 REMARK 3 T33: 0.0035 T12: 0.0003 REMARK 3 T13: -0.0015 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.0009 L22: 0.0001 REMARK 3 L33: 0.0026 L12: 0.0001 REMARK 3 L13: 0.0006 L23: 0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.0038 S13: 0.0003 REMARK 3 S21: -0.0002 S22: -0.0003 S23: 0.0007 REMARK 3 S31: 0.0015 S32: -0.0054 S33: 0.0026 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 110 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1456 -14.3646 -17.9061 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.0173 REMARK 3 T33: 0.0009 T12: -0.0004 REMARK 3 T13: 0.0002 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0099 L22: 0.0324 REMARK 3 L33: 0.0302 L12: 0.0027 REMARK 3 L13: 0.0153 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: -0.0007 S13: 0.0021 REMARK 3 S21: 0.0001 S22: -0.0008 S23: -0.0004 REMARK 3 S31: -0.0009 S32: 0.0001 S33: 0.0017 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 111 L 219 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6688 21.4597 -22.5339 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0224 REMARK 3 T33: 0.0028 T12: 0.0008 REMARK 3 T13: -0.0012 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0003 L22: 0.0000 REMARK 3 L33: 0.0001 L12: 0.0001 REMARK 3 L13: 0.0001 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: 0.0023 S13: -0.0002 REMARK 3 S21: 0.0004 S22: 0.0007 S23: -0.0001 REMARK 3 S31: -0.0001 S32: 0.0013 S33: -0.0001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69810 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.499 REMARK 200 RESOLUTION RANGE LOW (A) : 75.302 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64100 REMARK 200 R SYM FOR SHELL (I) : 0.64100 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 6C5V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM FORMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.91150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.35500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.20300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.35500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.91150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.20300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN H 213 O HOH H 301 2.07 REMARK 500 O HOH L 353 O HOH L 393 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 113 -62.97 -108.40 REMARK 500 VAL L 56 -51.16 80.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 531 DISTANCE = 6.02 ANGSTROMS DBREF 6NB8 H 1 230 PDB 6NB8 6NB8 1 230 DBREF 6NB8 L 1 219 PDB 6NB8 6NB8 1 219 SEQRES 1 H 230 GLN ALA GLN LEU VAL GLU SER GLY GLY ALA LEU VAL GLN SEQRES 2 H 230 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 230 PHE THR PHE ARG ASN TYR ALA MET HIS TRP VAL ARG GLN SEQRES 4 H 230 ALA PRO ALA THR GLY LEU GLN TRP LEU ALA VAL ILE THR SEQRES 5 H 230 SER ASP GLY ARG ASN LYS PHE TYR ALA ASP SER VAL LYS SEQRES 6 H 230 GLY ARG PHE THR ILE SER ARG GLU ASP SER LYS ASN THR SEQRES 7 H 230 LEU TYR LEU GLN MET ASP SER LEU ARG GLY GLU ASP THR SEQRES 8 H 230 ALA VAL TYR TYR CYS VAL THR GLN ARG ASP ASN SER ARG SEQRES 9 H 230 ASP TYR PHE PRO HIS TYR PHE HIS ASP MET ASP VAL TRP SEQRES 10 H 230 GLY GLN GLY THR THR VAL ALA VAL SER SER ALA SER THR SEQRES 11 H 230 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 230 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 230 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 230 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 230 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 230 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 230 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 230 ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 219 ASP VAL VAL LEU THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 L 219 THR LEU GLY GLN PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU VAL TYR SER ASP GLY ASP THR TYR LEU ASN SEQRES 4 L 219 TRP PHE GLN GLN ARG PRO GLY GLN SER PRO ARG ARG LEU SEQRES 5 L 219 ILE TYR GLN VAL SER ASN ARG ASP SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 219 TYR CYS MET GLN GLY SER HIS TRP PRO PRO THR PHE GLY SEQRES 9 L 219 GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS FORMUL 3 HOH *468(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ASP H 74 LYS H 76 5 3 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 PRO H 108 HIS H 112 5 5 HELIX 5 AA5 SER H 141 LYS H 143 5 3 HELIX 6 AA6 SER H 170 ALA H 172 5 3 HELIX 7 AA7 SER H 201 LEU H 203 5 3 HELIX 8 AA8 LYS H 215 ASN H 218 5 4 HELIX 9 AA9 GLU L 84 VAL L 88 5 5 HELIX 10 AB1 SER L 126 SER L 132 1 7 HELIX 11 AB2 LYS L 188 GLU L 192 1 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 THR H 78 MET H 83 -1 O LEU H 81 N LEU H 20 SHEET 4 AA1 4 PHE H 68 GLU H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 121 VAL H 125 1 O ALA H 124 N VAL H 12 SHEET 3 AA2 6 ALA H 92 THR H 98 -1 N TYR H 94 O THR H 121 SHEET 4 AA2 6 MET H 34 ALA H 40 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 GLY H 44 ILE H 51 -1 O GLN H 46 N ARG H 38 SHEET 6 AA2 6 LYS H 58 TYR H 60 -1 O PHE H 59 N VAL H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 121 VAL H 125 1 O ALA H 124 N VAL H 12 SHEET 3 AA3 4 ALA H 92 THR H 98 -1 N TYR H 94 O THR H 121 SHEET 4 AA3 4 VAL H 116 TRP H 117 -1 O VAL H 116 N THR H 98 SHEET 1 AA4 4 SER H 134 LEU H 138 0 SHEET 2 AA4 4 THR H 149 TYR H 159 -1 O LEU H 155 N PHE H 136 SHEET 3 AA4 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AA4 4 VAL H 177 THR H 179 -1 N HIS H 178 O VAL H 195 SHEET 1 AA5 4 THR H 145 SER H 146 0 SHEET 2 AA5 4 THR H 149 TYR H 159 -1 O THR H 149 N SER H 146 SHEET 3 AA5 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AA5 4 VAL H 183 LEU H 184 -1 N VAL H 183 O SER H 191 SHEET 1 AA6 3 THR H 165 TRP H 168 0 SHEET 2 AA6 3 TYR H 208 HIS H 214 -1 O ASN H 211 N SER H 167 SHEET 3 AA6 3 THR H 219 VAL H 225 -1 O VAL H 221 N VAL H 212 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 AA7 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 AA8 6 SER L 10 THR L 14 0 SHEET 2 AA8 6 THR L 107 LYS L 112 1 O LYS L 108 N LEU L 11 SHEET 3 AA8 6 GLY L 89 GLN L 95 -1 N GLY L 89 O VAL L 109 SHEET 4 AA8 6 LEU L 38 GLN L 43 -1 N ASN L 39 O MET L 94 SHEET 5 AA8 6 ARG L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 AA8 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AA9 4 SER L 10 THR L 14 0 SHEET 2 AA9 4 THR L 107 LYS L 112 1 O LYS L 108 N LEU L 11 SHEET 3 AA9 4 GLY L 89 GLN L 95 -1 N GLY L 89 O VAL L 109 SHEET 4 AA9 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AB1 4 SER L 119 PHE L 123 0 SHEET 2 AB1 4 THR L 134 PHE L 144 -1 O LEU L 140 N PHE L 121 SHEET 3 AB1 4 TYR L 178 SER L 187 -1 O LEU L 184 N VAL L 137 SHEET 4 AB1 4 SER L 164 VAL L 168 -1 N GLN L 165 O THR L 183 SHEET 1 AB2 4 ALA L 158 LEU L 159 0 SHEET 2 AB2 4 LYS L 150 VAL L 155 -1 N VAL L 155 O ALA L 158 SHEET 3 AB2 4 VAL L 196 THR L 202 -1 O GLU L 200 N GLN L 152 SHEET 4 AB2 4 VAL L 210 ASN L 215 -1 O VAL L 210 N VAL L 201 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 154 CYS H 210 1555 1555 2.04 SSBOND 3 CYS H 230 CYS L 219 1555 1555 2.05 SSBOND 4 CYS L 23 CYS L 93 1555 1555 2.24 SSBOND 5 CYS L 139 CYS L 199 1555 1555 1.97 CISPEP 1 PHE H 107 PRO H 108 0 -11.20 CISPEP 2 PHE H 160 PRO H 161 0 -5.72 CISPEP 3 GLU H 162 PRO H 163 0 -5.89 CISPEP 4 SER L 7 PRO L 8 0 -6.62 CISPEP 5 TRP L 99 PRO L 100 0 -2.03 CISPEP 6 TYR L 145 PRO L 146 0 0.98 CRYST1 37.823 104.406 108.710 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026439 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009199 0.00000