HEADER SIGNALING PROTEIN 07-DEC-18 6NBH TITLE CRYO-EM STRUCTURE OF PARATHYROID HORMONE RECEPTOR TYPE 1 IN COMPLEX TITLE 2 WITH A LONG-ACTING PARATHYROID HORMONE ANALOG AND G PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARATHYROID HORMONE/PARATHYROID HORMONE-RELATED PEPTIDE COMPND 3 RECEPTOR; COMPND 4 CHAIN: R; COMPND 5 SYNONYM: PTH/PTHRP TYPE I RECEPTOR,PTH/PTHR RECEPTOR,PARATHYROID COMPND 6 HORMONE 1 RECEPTOR,PTH1 RECEPTOR; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: LONG-ACTING PARATHYROID HORMONE ANALOG; COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: GS PROTEIN ALPHA SUBUNIT; COMPND 15 CHAIN: A; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT COMPND 19 BETA-1; COMPND 20 CHAIN: B; COMPND 21 SYNONYM: TRANSDUCIN BETA CHAIN 1; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(O) SUBUNIT COMPND 25 GAMMA-2; COMPND 26 CHAIN: G; COMPND 27 SYNONYM: G GAMMA-I; COMPND 28 ENGINEERED: YES; COMPND 29 MOL_ID: 6; COMPND 30 MOLECULE: NANOBODY-35; COMPND 31 CHAIN: N; COMPND 32 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTH1R, PTHR, PTHR1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7106; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 15 ORGANISM_TAXID: 9913; SOURCE 16 EXPRESSION_SYSTEM: SPODOPTERA; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7106; SOURCE 18 MOL_ID: 4; SOURCE 19 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 20 ORGANISM_COMMON: RAT; SOURCE 21 ORGANISM_TAXID: 10116; SOURCE 22 GENE: GNB1; SOURCE 23 EXPRESSION_SYSTEM: SPODOPTERA; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 7106; SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 27 ORGANISM_COMMON: BOVINE; SOURCE 28 ORGANISM_TAXID: 9913; SOURCE 29 GENE: GNG2; SOURCE 30 EXPRESSION_SYSTEM: SPODOPTERA; SOURCE 31 EXPRESSION_SYSTEM_TAXID: 7106; SOURCE 32 MOL_ID: 6; SOURCE 33 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 34 ORGANISM_TAXID: 32630; SOURCE 35 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 36 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PARATHYROID HORMONE RECEPTOR, GPCR, CLASS B GPCR, GPCR-G PROTEIN KEYWDS 2 COMPLEX, SIGNALING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR L.-H.ZHAO,S.MA,I.SUTKEVICIUTE,D.-D.SHEN,X.E.ZHOU,P.P.DE WAAL,C.-Y.LI, AUTHOR 2 Y.KANG,L.J.CLARK,F.G.JEAN-ALPHONSE,A.D.WHITE,K.XIAO,D.YANG,Y.JIANG, AUTHOR 3 T.WATANABE,T.J.GARDELLA,K.MELCHER,M.-W.WANG,J.-P.VILARDAGA,H.E.XU, AUTHOR 4 Y.ZHANG REVDAT 3 18-DEC-19 6NBH 1 SCALE REVDAT 2 24-APR-19 6NBH 1 JRNL REVDAT 1 17-APR-19 6NBH 0 JRNL AUTH L.H.ZHAO,S.MA,I.SUTKEVICIUTE,D.D.SHEN,X.E.ZHOU,P.W.DE WAAL, JRNL AUTH 2 C.Y.LI,Y.KANG,L.J.CLARK,F.G.JEAN-ALPHONSE,A.D.WHITE,D.YANG, JRNL AUTH 3 A.DAI,X.CAI,J.CHEN,C.LI,Y.JIANG,T.WATANABE,T.J.GARDELLA, JRNL AUTH 4 K.MELCHER,M.W.WANG,J.P.VILARDAGA,H.E.XU,Y.ZHANG JRNL TITL STRUCTURE AND DYNAMICS OF THE ACTIVE HUMAN PARATHYROID JRNL TITL 2 HORMONE RECEPTOR-1. JRNL REF SCIENCE V. 364 148 2019 JRNL REFN ESSN 1095-9203 JRNL PMID 30975883 JRNL DOI 10.1126/SCIENCE.AAV7942 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.500 REMARK 3 NUMBER OF PARTICLES : 134774 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6NBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238499. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF REMARK 245 PARATHYROID HORMONE RECEPTOR REMARK 245 TYPE 1 IN COMPLEX WITH A LONG- REMARK 245 ACTING PARATHYROID HORMONE REMARK 245 ANALOG AND G PROTEIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 BASE (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 60.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, P, A, B, G, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP R 27 REMARK 465 ALA R 28 REMARK 465 ASP R 29 REMARK 465 ASP R 30 REMARK 465 GLN R 57 REMARK 465 ARG R 58 REMARK 465 PRO R 59 REMARK 465 ALA R 60 REMARK 465 SER R 61 REMARK 465 ILE R 62 REMARK 465 MET R 63 REMARK 465 GLU R 64 REMARK 465 SER R 65 REMARK 465 ASP R 66 REMARK 465 LYS R 67 REMARK 465 GLY R 68 REMARK 465 TRP R 69 REMARK 465 THR R 70 REMARK 465 SER R 71 REMARK 465 ALA R 72 REMARK 465 SER R 73 REMARK 465 THR R 74 REMARK 465 SER R 75 REMARK 465 GLY R 76 REMARK 465 LYS R 77 REMARK 465 PRO R 78 REMARK 465 ARG R 79 REMARK 465 LYS R 80 REMARK 465 ASP R 81 REMARK 465 LYS R 82 REMARK 465 ALA R 83 REMARK 465 SER R 84 REMARK 465 GLY R 85 REMARK 465 LYS R 86 REMARK 465 LEU R 87 REMARK 465 TYR R 88 REMARK 465 PRO R 89 REMARK 465 GLU R 90 REMARK 465 SER R 91 REMARK 465 GLU R 92 REMARK 465 GLU R 93 REMARK 465 ASP R 94 REMARK 465 LYS R 95 REMARK 465 GLU R 96 REMARK 465 ALA R 97 REMARK 465 PRO R 98 REMARK 465 THR R 99 REMARK 465 GLY R 100 REMARK 465 SER R 101 REMARK 465 ARG R 102 REMARK 465 TYR R 103 REMARK 465 ARG R 104 REMARK 465 ASP R 251 REMARK 465 GLU R 252 REMARK 465 ALA R 253 REMARK 465 GLU R 254 REMARK 465 ARG R 255 REMARK 465 LEU R 256 REMARK 465 THR R 257 REMARK 465 GLU R 258 REMARK 465 GLU R 259 REMARK 465 GLU R 260 REMARK 465 LEU R 261 REMARK 465 ARG R 262 REMARK 465 ALA R 263 REMARK 465 ILE R 264 REMARK 465 ALA R 265 REMARK 465 GLN R 266 REMARK 465 ALA R 267 REMARK 465 PRO R 268 REMARK 465 PRO R 269 REMARK 465 PRO R 270 REMARK 465 PRO R 271 REMARK 465 ALA R 272 REMARK 465 GLY R 395 REMARK 465 ARG R 396 REMARK 465 CYS R 397 REMARK 465 ASP R 398 REMARK 465 LYS R 484 REMARK 465 ARG R 485 REMARK 465 LYS R 486 REMARK 465 ALA R 487 REMARK 465 ARG R 488 REMARK 465 SER R 489 REMARK 465 GLY R 490 REMARK 465 SER R 491 REMARK 465 SER R 492 REMARK 465 SER R 493 REMARK 465 TYR R 494 REMARK 465 SER R 495 REMARK 465 TYR R 496 REMARK 465 GLY R 497 REMARK 465 PRO R 498 REMARK 465 MET R 499 REMARK 465 VAL R 500 REMARK 465 SER R 501 REMARK 465 HIS R 502 REMARK 465 GLU R 503 REMARK 465 PHE R 504 REMARK 465 GLU P 35 REMARK 465 ILE P 36 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 CYS A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 MET A 76 REMARK 465 ARG A 77 REMARK 465 ILE A 78 REMARK 465 LEU A 79 REMARK 465 HIS A 80 REMARK 465 VAL A 81 REMARK 465 ASN A 82 REMARK 465 GLY A 83 REMARK 465 TYR A 84 REMARK 465 SER A 85 REMARK 465 GLU A 86 REMARK 465 GLU A 87 REMARK 465 GLU A 88 REMARK 465 CYS A 89 REMARK 465 LYS A 90 REMARK 465 GLN A 91 REMARK 465 TYR A 92 REMARK 465 LYS A 93 REMARK 465 ALA A 94 REMARK 465 VAL A 95 REMARK 465 VAL A 96 REMARK 465 TYR A 97 REMARK 465 SER A 98 REMARK 465 ASN A 99 REMARK 465 THR A 100 REMARK 465 ILE A 101 REMARK 465 GLN A 102 REMARK 465 SER A 103 REMARK 465 ILE A 104 REMARK 465 ILE A 105 REMARK 465 ALA A 106 REMARK 465 ILE A 107 REMARK 465 ILE A 108 REMARK 465 ARG A 109 REMARK 465 ALA A 110 REMARK 465 MET A 111 REMARK 465 GLY A 112 REMARK 465 ARG A 113 REMARK 465 LEU A 114 REMARK 465 LYS A 115 REMARK 465 ILE A 116 REMARK 465 ASP A 117 REMARK 465 PHE A 118 REMARK 465 GLY A 119 REMARK 465 ASP A 120 REMARK 465 SER A 121 REMARK 465 ALA A 122 REMARK 465 ARG A 123 REMARK 465 ALA A 124 REMARK 465 ASP A 125 REMARK 465 ASP A 126 REMARK 465 ALA A 127 REMARK 465 ARG A 128 REMARK 465 GLN A 129 REMARK 465 LEU A 130 REMARK 465 PHE A 131 REMARK 465 VAL A 132 REMARK 465 LEU A 133 REMARK 465 ALA A 134 REMARK 465 GLY A 135 REMARK 465 ALA A 136 REMARK 465 ALA A 137 REMARK 465 GLU A 138 REMARK 465 GLU A 139 REMARK 465 GLY A 140 REMARK 465 PHE A 141 REMARK 465 MET A 142 REMARK 465 THR A 143 REMARK 465 ALA A 144 REMARK 465 GLU A 145 REMARK 465 LEU A 146 REMARK 465 ALA A 147 REMARK 465 GLY A 148 REMARK 465 VAL A 149 REMARK 465 ILE A 150 REMARK 465 LYS A 151 REMARK 465 ARG A 152 REMARK 465 LEU A 153 REMARK 465 TRP A 154 REMARK 465 LYS A 155 REMARK 465 ASP A 156 REMARK 465 SER A 157 REMARK 465 GLY A 158 REMARK 465 VAL A 159 REMARK 465 GLN A 160 REMARK 465 ALA A 161 REMARK 465 CYS A 162 REMARK 465 PHE A 163 REMARK 465 ASN A 164 REMARK 465 ARG A 165 REMARK 465 SER A 166 REMARK 465 ARG A 167 REMARK 465 GLU A 168 REMARK 465 TYR A 169 REMARK 465 GLN A 170 REMARK 465 LEU A 171 REMARK 465 ASN A 172 REMARK 465 ASP A 173 REMARK 465 SER A 174 REMARK 465 ALA A 175 REMARK 465 ALA A 176 REMARK 465 TYR A 177 REMARK 465 TYR A 178 REMARK 465 LEU A 179 REMARK 465 ASN A 180 REMARK 465 ASP A 181 REMARK 465 LEU A 182 REMARK 465 ASP A 183 REMARK 465 ARG A 184 REMARK 465 ILE A 185 REMARK 465 ALA A 186 REMARK 465 GLN A 187 REMARK 465 PRO A 188 REMARK 465 ASN A 189 REMARK 465 TYR A 190 REMARK 465 ILE A 191 REMARK 465 PRO A 192 REMARK 465 THR A 193 REMARK 465 GLN A 194 REMARK 465 GLN A 195 REMARK 465 ASP A 196 REMARK 465 VAL A 197 REMARK 465 LEU A 198 REMARK 465 ARG A 199 REMARK 465 THR A 200 REMARK 465 ARG A 201 REMARK 465 VAL A 202 REMARK 465 LYS A 203 REMARK 465 THR A 204 REMARK 465 SER A 252 REMARK 465 TYR A 253 REMARK 465 ASN A 254 REMARK 465 MET A 255 REMARK 465 VAL A 256 REMARK 465 ILE A 257 REMARK 465 ARG A 258 REMARK 465 GLU A 259 REMARK 465 ASP A 260 REMARK 465 ASN A 261 REMARK 465 GLY A 304 REMARK 465 LYS A 305 REMARK 465 SER A 306 REMARK 465 LYS A 307 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 LEU B -1 REMARK 465 LEU B 0 REMARK 465 GLN B 1 REMARK 465 SER B 2 REMARK 465 MET G 1 REMARK 465 ALA G 2 REMARK 465 SER G 3 REMARK 465 ASN G 4 REMARK 465 ASN G 5 REMARK 465 GLU G 63 REMARK 465 LYS G 64 REMARK 465 LYS G 65 REMARK 465 PHE G 66 REMARK 465 PHE G 67 REMARK 465 CYS G 68 REMARK 465 ALA G 69 REMARK 465 ILE G 70 REMARK 465 LEU G 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE R 115 -54.10 -132.36 REMARK 500 THR R 175 -72.09 -126.56 REMARK 500 ALA R 347 -72.09 -88.51 REMARK 500 PHE A 238 49.35 -109.38 REMARK 500 ASP A 354 -2.59 79.59 REMARK 500 THR B 128 70.59 49.16 REMARK 500 CYS B 204 31.79 -91.72 REMARK 500 ALA B 248 2.18 81.90 REMARK 500 ASP B 291 38.59 -95.09 REMARK 500 VAL N 48 -61.75 -100.14 REMARK 500 PRO N 88 -3.09 -59.82 REMARK 500 ASP N 109 40.17 -141.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR R 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR R 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR R 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR R 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR R 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR R 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR R 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM R 608 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0411 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF PARATHYROID HORMONE RECEPTOR TYPE 1 IN COMPLEX REMARK 900 WITH A LONG-ACTING PARATHYROID HORMONE ANALOG AND G PROTEIN DBREF 6NBH R 27 502 UNP Q03431 PTH1R_HUMAN 27 502 DBREF 6NBH P 1 36 PDB 6NBH 6NBH 1 36 DBREF 6NBH A 1 394 PDB 6NBH 6NBH 1 394 DBREF 6NBH B 2 340 UNP P54311 GBB1_RAT 2 340 DBREF 6NBH G 1 71 UNP P63212 GBG2_BOVIN 1 71 DBREF 6NBH N 1 126 PDB 6NBH 6NBH 1 126 SEQADV 6NBH ALA R 188 UNP Q03431 GLY 188 ENGINEERED MUTATION SEQADV 6NBH GLU R 503 UNP Q03431 EXPRESSION TAG SEQADV 6NBH PHE R 504 UNP Q03431 EXPRESSION TAG SEQADV 6NBH MET B -4 UNP P54311 INITIATING METHIONINE SEQADV 6NBH GLY B -3 UNP P54311 EXPRESSION TAG SEQADV 6NBH SER B -2 UNP P54311 EXPRESSION TAG SEQADV 6NBH LEU B -1 UNP P54311 EXPRESSION TAG SEQADV 6NBH LEU B 0 UNP P54311 EXPRESSION TAG SEQADV 6NBH GLN B 1 UNP P54311 EXPRESSION TAG SEQRES 1 R 478 ASP ALA ASP ASP VAL MET THR LYS GLU GLU GLN ILE PHE SEQRES 2 R 478 LEU LEU HIS ARG ALA GLN ALA GLN CYS GLU LYS ARG LEU SEQRES 3 R 478 LYS GLU VAL LEU GLN ARG PRO ALA SER ILE MET GLU SER SEQRES 4 R 478 ASP LYS GLY TRP THR SER ALA SER THR SER GLY LYS PRO SEQRES 5 R 478 ARG LYS ASP LYS ALA SER GLY LYS LEU TYR PRO GLU SER SEQRES 6 R 478 GLU GLU ASP LYS GLU ALA PRO THR GLY SER ARG TYR ARG SEQRES 7 R 478 GLY ARG PRO CYS LEU PRO GLU TRP ASP HIS ILE LEU CYS SEQRES 8 R 478 TRP PRO LEU GLY ALA PRO GLY GLU VAL VAL ALA VAL PRO SEQRES 9 R 478 CYS PRO ASP TYR ILE TYR ASP PHE ASN HIS LYS GLY HIS SEQRES 10 R 478 ALA TYR ARG ARG CYS ASP ARG ASN GLY SER TRP GLU LEU SEQRES 11 R 478 VAL PRO GLY HIS ASN ARG THR TRP ALA ASN TYR SER GLU SEQRES 12 R 478 CYS VAL LYS PHE LEU THR ASN GLU THR ARG GLU ARG GLU SEQRES 13 R 478 VAL PHE ASP ARG LEU ALA MET ILE TYR THR VAL GLY TYR SEQRES 14 R 478 SER VAL SER LEU ALA SER LEU THR VAL ALA VAL LEU ILE SEQRES 15 R 478 LEU ALA TYR PHE ARG ARG LEU HIS CYS THR ARG ASN TYR SEQRES 16 R 478 ILE HIS MET HIS LEU PHE LEU SER PHE MET LEU ARG ALA SEQRES 17 R 478 VAL SER ILE PHE VAL LYS ASP ALA VAL LEU TYR SER GLY SEQRES 18 R 478 ALA THR LEU ASP GLU ALA GLU ARG LEU THR GLU GLU GLU SEQRES 19 R 478 LEU ARG ALA ILE ALA GLN ALA PRO PRO PRO PRO ALA THR SEQRES 20 R 478 ALA ALA ALA GLY TYR ALA GLY CYS ARG VAL ALA VAL THR SEQRES 21 R 478 PHE PHE LEU TYR PHE LEU ALA THR ASN TYR TYR TRP ILE SEQRES 22 R 478 LEU VAL GLU GLY LEU TYR LEU HIS SER LEU ILE PHE MET SEQRES 23 R 478 ALA PHE PHE SER GLU LYS LYS TYR LEU TRP GLY PHE THR SEQRES 24 R 478 VAL PHE GLY TRP GLY LEU PRO ALA VAL PHE VAL ALA VAL SEQRES 25 R 478 TRP VAL SER VAL ARG ALA THR LEU ALA ASN THR GLY CYS SEQRES 26 R 478 TRP ASP LEU SER SER GLY ASN LYS LYS TRP ILE ILE GLN SEQRES 27 R 478 VAL PRO ILE LEU ALA SER ILE VAL LEU ASN PHE ILE LEU SEQRES 28 R 478 PHE ILE ASN ILE VAL ARG VAL LEU ALA THR LYS LEU ARG SEQRES 29 R 478 GLU THR ASN ALA GLY ARG CYS ASP THR ARG GLN GLN TYR SEQRES 30 R 478 ARG LYS LEU LEU LYS SER THR LEU VAL LEU MET PRO LEU SEQRES 31 R 478 PHE GLY VAL HIS TYR ILE VAL PHE MET ALA THR PRO TYR SEQRES 32 R 478 THR GLU VAL SER GLY THR LEU TRP GLN VAL GLN MET HIS SEQRES 33 R 478 TYR GLU MET LEU PHE ASN SER PHE GLN GLY PHE PHE VAL SEQRES 34 R 478 ALA ILE ILE TYR CYS PHE CYS ASN GLY GLU VAL GLN ALA SEQRES 35 R 478 GLU ILE LYS LYS SER TRP SER ARG TRP THR LEU ALA LEU SEQRES 36 R 478 ASP PHE LYS ARG LYS ALA ARG SER GLY SER SER SER TYR SEQRES 37 R 478 SER TYR GLY PRO MET VAL SER HIS GLU PHE SEQRES 1 P 36 ALA VAL ALA GLU ILE GLN LEU MET HIS GLN ARG ALA LYS SEQRES 2 P 36 TRP ILE GLN ASP ALA ARG ARG ARG ALA PHE LEU HIS LYS SEQRES 3 P 36 LEU ILE ALA GLU ILE HIS THR ALA GLU ILE SEQRES 1 A 378 MET GLY CYS LEU GLY ASN SER LYS THR GLU ASP GLN ARG SEQRES 2 A 378 ASN GLU GLU LYS ALA GLN ARG GLU ALA ASN LYS LYS ILE SEQRES 3 A 378 GLU LYS GLN LEU GLN LYS ASP LYS GLN VAL TYR ARG ALA SEQRES 4 A 378 THR HIS ARG LEU LEU LEU LEU GLY ALA GLY GLU SER GLY SEQRES 5 A 378 LYS SER THR ILE VAL LYS GLN MET ARG ILE LEU HIS VAL SEQRES 6 A 378 ASN GLY TYR SER GLU GLU GLU CYS LYS GLN TYR LYS ALA SEQRES 7 A 378 VAL VAL TYR SER ASN THR ILE GLN SER ILE ILE ALA ILE SEQRES 8 A 378 ILE ARG ALA MET GLY ARG LEU LYS ILE ASP PHE GLY ASP SEQRES 9 A 378 SER ALA ARG ALA ASP ASP ALA ARG GLN LEU PHE VAL LEU SEQRES 10 A 378 ALA GLY ALA ALA GLU GLU GLY PHE MET THR ALA GLU LEU SEQRES 11 A 378 ALA GLY VAL ILE LYS ARG LEU TRP LYS ASP SER GLY VAL SEQRES 12 A 378 GLN ALA CYS PHE ASN ARG SER ARG GLU TYR GLN LEU ASN SEQRES 13 A 378 ASP SER ALA ALA TYR TYR LEU ASN ASP LEU ASP ARG ILE SEQRES 14 A 378 ALA GLN PRO ASN TYR ILE PRO THR GLN GLN ASP VAL LEU SEQRES 15 A 378 ARG THR ARG VAL LYS THR THR GLY ILE PHE GLU THR LYS SEQRES 16 A 378 PHE GLN VAL ASP LYS VAL ASN PHE HIS MET PHE ASP VAL SEQRES 17 A 378 GLY GLY GLN ARG ASP GLU ARG ARG LYS TRP ILE GLN CYS SEQRES 18 A 378 PHE ASN ASP VAL THR ALA ILE ILE PHE VAL VAL ALA SER SEQRES 19 A 378 SER SER TYR ASN MET VAL ILE ARG GLU ASP ASN GLN THR SEQRES 20 A 378 ASN ARG LEU GLN GLU ALA LEU ASN LEU PHE LYS SER ILE SEQRES 21 A 378 TRP ASN ASN ARG TRP LEU ARG THR ILE SER VAL ILE LEU SEQRES 22 A 378 PHE LEU ASN LYS GLN ASP LEU LEU ALA GLU LYS VAL LEU SEQRES 23 A 378 ALA GLY LYS SER LYS ILE GLU ASP TYR PHE PRO GLU PHE SEQRES 24 A 378 ALA ARG TYR THR THR PRO GLU ASP ALA THR PRO GLU PRO SEQRES 25 A 378 GLY GLU ASP PRO ARG VAL THR ARG ALA LYS TYR PHE ILE SEQRES 26 A 378 ARG ASP GLU PHE LEU ARG ILE SER THR ALA SER GLY ASP SEQRES 27 A 378 GLY ARG HIS TYR CYS TYR PRO HIS PHE THR CYS ALA VAL SEQRES 28 A 378 ASP THR GLU ASN ILE ARG ARG VAL PHE ASN ASP CYS ARG SEQRES 29 A 378 ASP ILE ILE GLN ARG MET HIS LEU ARG GLN TYR GLU LEU SEQRES 30 A 378 LEU SEQRES 1 B 345 MET GLY SER LEU LEU GLN SER GLU LEU ASP GLN LEU ARG SEQRES 2 B 345 GLN GLU ALA GLU GLN LEU LYS ASN GLN ILE ARG ASP ALA SEQRES 3 B 345 ARG LYS ALA CYS ALA ASP ALA THR LEU SER GLN ILE THR SEQRES 4 B 345 ASN ASN ILE ASP PRO VAL GLY ARG ILE GLN MET ARG THR SEQRES 5 B 345 ARG ARG THR LEU ARG GLY HIS LEU ALA LYS ILE TYR ALA SEQRES 6 B 345 MET HIS TRP GLY THR ASP SER ARG LEU LEU VAL SER ALA SEQRES 7 B 345 SER GLN ASP GLY LYS LEU ILE ILE TRP ASP SER TYR THR SEQRES 8 B 345 THR ASN LYS VAL HIS ALA ILE PRO LEU ARG SER SER TRP SEQRES 9 B 345 VAL MET THR CYS ALA TYR ALA PRO SER GLY ASN TYR VAL SEQRES 10 B 345 ALA CYS GLY GLY LEU ASP ASN ILE CYS SER ILE TYR ASN SEQRES 11 B 345 LEU LYS THR ARG GLU GLY ASN VAL ARG VAL SER ARG GLU SEQRES 12 B 345 LEU ALA GLY HIS THR GLY TYR LEU SER CYS CYS ARG PHE SEQRES 13 B 345 LEU ASP ASP ASN GLN ILE VAL THR SER SER GLY ASP THR SEQRES 14 B 345 THR CYS ALA LEU TRP ASP ILE GLU THR GLY GLN GLN THR SEQRES 15 B 345 THR THR PHE THR GLY HIS THR GLY ASP VAL MET SER LEU SEQRES 16 B 345 SER LEU ALA PRO ASP THR ARG LEU PHE VAL SER GLY ALA SEQRES 17 B 345 CYS ASP ALA SER ALA LYS LEU TRP ASP VAL ARG GLU GLY SEQRES 18 B 345 MET CYS ARG GLN THR PHE THR GLY HIS GLU SER ASP ILE SEQRES 19 B 345 ASN ALA ILE CYS PHE PHE PRO ASN GLY ASN ALA PHE ALA SEQRES 20 B 345 THR GLY SER ASP ASP ALA THR CYS ARG LEU PHE ASP LEU SEQRES 21 B 345 ARG ALA ASP GLN GLU LEU MET THR TYR SER HIS ASP ASN SEQRES 22 B 345 ILE ILE CYS GLY ILE THR SER VAL SER PHE SER LYS SER SEQRES 23 B 345 GLY ARG LEU LEU LEU ALA GLY TYR ASP ASP PHE ASN CYS SEQRES 24 B 345 ASN VAL TRP ASP ALA LEU LYS ALA ASP ARG ALA GLY VAL SEQRES 25 B 345 LEU ALA GLY HIS ASP ASN ARG VAL SER CYS LEU GLY VAL SEQRES 26 B 345 THR ASP ASP GLY MET ALA VAL ALA THR GLY SER TRP ASP SEQRES 27 B 345 SER PHE LEU LYS ILE TRP ASN SEQRES 1 G 71 MET ALA SER ASN ASN THR ALA SER ILE ALA GLN ALA ARG SEQRES 2 G 71 LYS LEU VAL GLU GLN LEU LYS MET GLU ALA ASN ILE ASP SEQRES 3 G 71 ARG ILE LYS VAL SER LYS ALA ALA ALA ASP LEU MET ALA SEQRES 4 G 71 TYR CYS GLU ALA HIS ALA LYS GLU ASP PRO LEU LEU THR SEQRES 5 G 71 PRO VAL PRO ALA SER GLU ASN PRO PHE ARG GLU LYS LYS SEQRES 6 G 71 PHE PHE CYS ALA ILE LEU SEQRES 1 N 126 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 N 126 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 N 126 PHE THR PHE SER ASN TYR LYS MET ASN TRP VAL ARG GLN SEQRES 4 N 126 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ASP ILE SER SEQRES 5 N 126 GLN SER GLY ALA SER ILE SER TYR THR GLY SER VAL LYS SEQRES 6 N 126 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 N 126 LEU TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 N 126 ALA VAL TYR TYR CYS ALA ARG CYS PRO ALA PRO PHE THR SEQRES 9 N 126 ARG ASP CYS PHE ASP VAL THR SER THR THR TYR ALA TYR SEQRES 10 N 126 ARG GLY GLN GLY THR GLN VAL THR VAL HET CLR R 601 28 HET CLR R 602 28 HET CLR R 603 28 HET CLR R 604 28 HET CLR R 605 28 HET CLR R 606 28 HET CLR R 607 28 HET PLM R 608 18 HET PLM R 609 18 HET PLM R 610 18 HETNAM CLR CHOLESTEROL HETNAM PLM PALMITIC ACID FORMUL 7 CLR 7(C27 H46 O) FORMUL 14 PLM 3(C16 H32 O2) HELIX 1 AA1 THR R 33 LEU R 56 1 24 HELIX 2 AA2 GLU R 177 PHE R 212 1 36 HELIX 3 AA3 THR R 218 VAL R 239 1 22 HELIX 4 AA4 VAL R 239 LEU R 250 1 12 HELIX 5 AA5 ALA R 274 TYR R 278 1 5 HELIX 6 AA6 ALA R 279 MET R 312 1 34 HELIX 7 AA7 SER R 316 ALA R 347 1 32 HELIX 8 AA8 GLY R 357 LYS R 359 5 3 HELIX 9 AA9 LYS R 360 ALA R 369 1 10 HELIX 10 AB1 ILE R 371 ILE R 381 1 11 HELIX 11 AB2 ARG R 383 GLU R 391 1 9 HELIX 12 AB3 ARG R 400 VAL R 412 1 13 HELIX 13 AB4 LEU R 413 GLY R 418 1 6 HELIX 14 AB5 VAL R 419 PHE R 424 5 6 HELIX 15 AB6 GLY R 434 CYS R 460 1 27 HELIX 16 AB7 ASN R 463 LEU R 481 1 19 HELIX 17 AB8 VAL P 2 HIS P 32 1 31 HELIX 18 AB9 GLN A 12 THR A 40 1 29 HELIX 19 AC1 GLY A 52 GLN A 59 1 8 HELIX 20 AC2 LYS A 233 PHE A 238 5 6 HELIX 21 AC3 ASN A 264 ASN A 279 1 16 HELIX 22 AC4 ARG A 280 ARG A 283 5 4 HELIX 23 AC5 LYS A 293 LYS A 300 1 8 HELIX 24 AC6 ASP A 331 SER A 352 1 22 HELIX 25 AC7 GLU A 370 TYR A 391 1 22 HELIX 26 AC8 LEU B 4 ALA B 26 1 23 HELIX 27 AC9 ALA G 7 ASN G 24 1 18 HELIX 28 AD1 LYS G 29 HIS G 44 1 16 HELIX 29 AD2 THR N 28 TYR N 32 5 5 SHEET 1 AA1 2 VAL R 126 PRO R 130 0 SHEET 2 AA1 2 HIS R 143 ARG R 147 -1 O ALA R 144 N VAL R 129 SHEET 1 AA2 6 ILE A 207 GLN A 213 0 SHEET 2 AA2 6 ASN A 218 VAL A 224 -1 O PHE A 219 N PHE A 212 SHEET 3 AA2 6 HIS A 41 GLY A 47 1 N LEU A 43 O HIS A 220 SHEET 4 AA2 6 ALA A 243 ALA A 249 1 O ILE A 245 N LEU A 44 SHEET 5 AA2 6 VAL A 287 ASN A 292 1 O ILE A 288 N PHE A 246 SHEET 6 AA2 6 CYS A 359 PHE A 363 1 O TYR A 360 N LEU A 289 SHEET 1 AA3 4 THR B 47 LEU B 51 0 SHEET 2 AA3 4 LEU B 336 TRP B 339 -1 O ILE B 338 N ARG B 48 SHEET 3 AA3 4 VAL B 327 SER B 331 -1 N VAL B 327 O TRP B 339 SHEET 4 AA3 4 VAL B 315 VAL B 320 -1 N GLY B 319 O ALA B 328 SHEET 1 AA4 4 ILE B 58 TRP B 63 0 SHEET 2 AA4 4 LEU B 69 SER B 74 -1 O ALA B 73 N TYR B 59 SHEET 3 AA4 4 LYS B 78 ASP B 83 -1 O TRP B 82 N LEU B 70 SHEET 4 AA4 4 LYS B 89 PRO B 94 -1 O VAL B 90 N ILE B 81 SHEET 1 AA5 4 THR B 102 TYR B 105 0 SHEET 2 AA5 4 TYR B 111 GLY B 115 -1 O GLY B 115 N THR B 102 SHEET 3 AA5 4 CYS B 121 ASN B 125 -1 O TYR B 124 N VAL B 112 SHEET 4 AA5 4 VAL B 135 LEU B 139 -1 O LEU B 139 N CYS B 121 SHEET 1 AA6 4 LEU B 146 PHE B 151 0 SHEET 2 AA6 4 GLN B 156 SER B 161 -1 O SER B 160 N CYS B 148 SHEET 3 AA6 4 CYS B 166 ASP B 170 -1 O ALA B 167 N THR B 159 SHEET 4 AA6 4 GLN B 176 PHE B 180 -1 O PHE B 180 N CYS B 166 SHEET 1 AA7 4 VAL B 187 LEU B 192 0 SHEET 2 AA7 4 LEU B 198 ALA B 203 -1 O GLY B 202 N SER B 189 SHEET 3 AA7 4 ALA B 208 ASP B 212 -1 O TRP B 211 N PHE B 199 SHEET 4 AA7 4 CYS B 218 PHE B 222 -1 O ARG B 219 N LEU B 210 SHEET 1 AA8 4 ILE B 229 PHE B 234 0 SHEET 2 AA8 4 ALA B 240 SER B 245 -1 O ALA B 242 N CYS B 233 SHEET 3 AA8 4 CYS B 250 ASP B 254 -1 O PHE B 253 N PHE B 241 SHEET 4 AA8 4 GLU B 260 TYR B 264 -1 O LEU B 261 N LEU B 252 SHEET 1 AA9 4 ILE B 273 PHE B 278 0 SHEET 2 AA9 4 LEU B 284 TYR B 289 -1 O GLY B 288 N SER B 275 SHEET 3 AA9 4 CYS B 294 ASP B 298 -1 O TRP B 297 N LEU B 285 SHEET 4 AA9 4 ARG B 304 LEU B 308 -1 O ALA B 305 N VAL B 296 SHEET 1 AB1 4 GLN N 3 SER N 7 0 SHEET 2 AB1 4 LEU N 18 SER N 25 -1 O ALA N 23 N GLN N 5 SHEET 3 AB1 4 THR N 78 MET N 83 -1 O MET N 83 N LEU N 18 SHEET 4 AB1 4 PHE N 68 ASP N 73 -1 N SER N 71 O TYR N 80 SHEET 1 AB2 6 GLY N 10 LEU N 11 0 SHEET 2 AB2 6 THR N 122 THR N 125 1 O GLN N 123 N GLY N 10 SHEET 3 AB2 6 ALA N 92 ARG N 98 -1 N TYR N 94 O THR N 122 SHEET 4 AB2 6 MET N 34 GLN N 39 -1 N VAL N 37 O TYR N 95 SHEET 5 AB2 6 LEU N 45 ILE N 51 -1 O SER N 49 N TRP N 36 SHEET 6 AB2 6 ILE N 58 TYR N 60 -1 O SER N 59 N ASP N 50 SSBOND 1 CYS R 48 CYS R 117 1555 1555 2.04 SSBOND 2 CYS R 108 CYS R 148 1555 1555 2.03 SSBOND 3 CYS R 131 CYS R 170 1555 1555 2.04 SSBOND 4 CYS R 281 CYS R 351 1555 1555 2.03 SSBOND 5 CYS N 22 CYS N 96 1555 1555 2.04 SSBOND 6 CYS N 99 CYS N 107 1555 1555 2.03 SITE 1 AC1 3 TRP R 322 VAL R 326 CLR R 607 SITE 1 AC2 3 ILE R 422 ALA R 426 PRO R 428 SITE 1 AC3 2 TRP R 361 PRO R 428 SITE 1 AC4 1 VAL R 382 SITE 1 AC5 2 ALA R 279 THR R 286 SITE 1 AC6 2 ASN R 358 LYS R 359 SITE 1 AC7 2 PHE R 291 CLR R 601 SITE 1 AC8 2 ALA R 275 TYR R 278 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000