HEADER LIGASE/LIGASE INHIBITOR 13-DEC-18 6NDL TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS BIOTIN PROTEIN LIGASE IN TITLE 2 COMPLEX WITH A SULFONAMIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN PROTEIN LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.4.15; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BPL INHIBITOR, SULFONAMIDE ANALOGUE, AMINO SULFONYLUREA, ANTIBIOTIC, KEYWDS 2 LIGASE, LIGASE-LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.C.MARSHALL,S.W.POLYAK,J.B.BRUNING,K.LEE REVDAT 3 11-OCT-23 6NDL 1 REMARK REVDAT 2 25-DEC-19 6NDL 1 SOURCE REVDAT 1 18-DEC-19 6NDL 0 JRNL AUTH K.J.LEE,W.TIEU,B.BLANCO-RODRIGUEZ,A.S.PAPARELLA,J.YU, JRNL AUTH 2 A.HAYES,J.FENG,A.C.MARSHALL,B.NOLL,R.MILNE,D.CINI, JRNL AUTH 3 M.C.J.WILCE,G.W.BOOKER,J.B.BRUNING,S.W.POLYAK,A.D.ABELL JRNL TITL SULFONAMIDE-BASED INHIBITORS OF BIOTIN PROTEIN LIGASE AS NEW JRNL TITL 2 ANTIBIOTIC LEADS. JRNL REF ACS CHEM.BIOL. V. 14 1990 2019 JRNL REFN ESSN 1554-8937 JRNL PMID 31407891 JRNL DOI 10.1021/ACSCHEMBIO.9B00463 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6700 - 4.8188 0.99 2953 167 0.1573 0.1983 REMARK 3 2 4.8188 - 3.8254 1.00 2796 154 0.1293 0.1853 REMARK 3 3 3.8254 - 3.3420 1.00 2757 151 0.1492 0.2217 REMARK 3 4 3.3420 - 3.0365 1.00 2741 158 0.1633 0.2171 REMARK 3 5 3.0365 - 2.8189 1.00 2769 112 0.1886 0.2350 REMARK 3 6 2.8189 - 2.6527 1.00 2730 139 0.1853 0.2429 REMARK 3 7 2.6527 - 2.5199 1.00 2725 122 0.1906 0.2471 REMARK 3 8 2.5199 - 2.4102 1.00 2705 155 0.2091 0.2846 REMARK 3 9 2.4102 - 2.3174 1.00 2705 150 0.2317 0.2887 REMARK 3 10 2.3174 - 2.2374 1.00 2678 154 0.2596 0.3125 REMARK 3 11 2.2374 - 2.1675 1.00 2701 146 0.2796 0.3252 REMARK 3 12 2.1675 - 2.1055 1.00 2681 153 0.2955 0.3166 REMARK 3 13 2.1055 - 2.0501 1.00 2683 125 0.3438 0.3948 REMARK 3 14 2.0501 - 2.0001 1.00 2688 142 0.3637 0.3757 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6289 24.4597 46.3907 REMARK 3 T TENSOR REMARK 3 T11: 0.5355 T22: 0.6355 REMARK 3 T33: 0.5261 T12: 0.1824 REMARK 3 T13: 0.0824 T23: 0.1139 REMARK 3 L TENSOR REMARK 3 L11: 6.6780 L22: 5.9630 REMARK 3 L33: 7.7094 L12: -0.7760 REMARK 3 L13: -3.8042 L23: 2.8703 REMARK 3 S TENSOR REMARK 3 S11: 0.1550 S12: -0.2261 S13: 0.4307 REMARK 3 S21: -0.0563 S22: 0.0997 S23: -0.4590 REMARK 3 S31: -0.0874 S32: -0.1670 S33: -0.2342 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3874 17.6279 22.2486 REMARK 3 T TENSOR REMARK 3 T11: 0.3261 T22: 0.4661 REMARK 3 T33: 0.3813 T12: 0.0274 REMARK 3 T13: 0.0471 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 2.5629 L22: 4.8954 REMARK 3 L33: 3.6033 L12: 0.4137 REMARK 3 L13: -0.4924 L23: -0.1349 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: 0.1170 S13: 0.3863 REMARK 3 S21: 0.0295 S22: 0.2296 S23: 0.2082 REMARK 3 S31: -0.5447 S32: -0.1616 S33: -0.2861 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0811 18.3694 10.1123 REMARK 3 T TENSOR REMARK 3 T11: 0.5056 T22: 0.6073 REMARK 3 T33: 0.5445 T12: 0.0299 REMARK 3 T13: -0.0530 T23: 0.2000 REMARK 3 L TENSOR REMARK 3 L11: 3.7256 L22: 3.7387 REMARK 3 L33: 7.3718 L12: 0.6918 REMARK 3 L13: -1.5525 L23: -0.2967 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.6465 S13: 0.4882 REMARK 3 S21: -0.5690 S22: 0.3603 S23: 0.6747 REMARK 3 S31: -0.6468 S32: -0.8455 S33: -0.3575 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.7277 16.4037 -0.7987 REMARK 3 T TENSOR REMARK 3 T11: 0.7408 T22: 0.8117 REMARK 3 T33: 0.4770 T12: -0.1524 REMARK 3 T13: 0.1044 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.5733 L22: 8.5338 REMARK 3 L33: 8.7303 L12: 2.7436 REMARK 3 L13: -4.3184 L23: -2.6806 REMARK 3 S TENSOR REMARK 3 S11: -0.1442 S12: 0.5831 S13: -0.0558 REMARK 3 S21: -0.6085 S22: 0.2499 S23: -0.5510 REMARK 3 S31: 0.0552 S32: 0.2153 S33: -0.0462 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NDL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : CE-/ND-DOPED YTTRIUM ALUMINIUM REMARK 200 GARNET (YAG) CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40406 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.40 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 29.50 REMARK 200 R MERGE FOR SHELL (I) : 6.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6APW REMARK 200 REMARK 200 REMARK: SQUARE ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG8000, 0.1M TRIS PH 8.5, 10% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.01550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.01550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.48850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.01550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.01550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.48850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.01550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.01550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.48850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.01550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.01550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.48850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 754 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 961 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 NE CZ NH1 NH2 REMARK 470 LYS A 236 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 622 O HOH A 664 2.07 REMARK 500 O HOH A 655 O HOH A 831 2.13 REMARK 500 O HOH A 823 O HOH A 854 2.13 REMARK 500 O HOH A 783 O HOH A 791 2.14 REMARK 500 ND2 ASN A 199 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 524 O HOH A 860 2655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 55 -2.80 68.44 REMARK 500 ASN A 179 12.18 -141.40 REMARK 500 ASP A 184 -122.87 57.71 REMARK 500 ASN A 287 -116.41 59.02 REMARK 500 PHE A 323 -71.75 -82.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 958 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 959 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 960 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 961 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 962 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A 963 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 964 DISTANCE = 6.97 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BQX A 406 DBREF 6NDL A 1 330 PDB 6NDL 6NDL 1 330 SEQRES 1 A 330 MET SER LYS TYR SER GLN ASP VAL LEU GLN LEU LEU TYR SEQRES 2 A 330 LYS ASN LYS PRO ASN TYR ILE SER GLY GLN SER ILE ALA SEQRES 3 A 330 GLU SER LEU ASN ILE SER ARG THR ALA VAL LYS LYS VAL SEQRES 4 A 330 ILE ASP GLN LEU LYS LEU GLU GLY CYS LYS ILE ASP SER SEQRES 5 A 330 VAL ASN HIS LYS GLY HIS LEU LEU GLN GLN LEU PRO ASP SEQRES 6 A 330 ILE TRP TYR GLN GLY ILE ILE ASP GLN TYR THR LYS SER SEQRES 7 A 330 SER ALA LEU PHE ASP PHE SER GLU VAL TYR ASP SER ILE SEQRES 8 A 330 ASP SER THR GLN LEU ALA ALA LYS LYS SER LEU VAL GLY SEQRES 9 A 330 ASN GLN SER SER PHE PHE ILE LEU SER ASP GLU GLN THR SEQRES 10 A 330 LYS GLY ARG GLY ARG PHE ASN ARG HIS TRP SER SER SER SEQRES 11 A 330 LYS GLY GLN GLY LEU TRP MET SER VAL VAL LEU ARG PRO SEQRES 12 A 330 ASN VAL ALA PHE SER MET ILE SER LYS PHE ASN LEU PHE SEQRES 13 A 330 ILE ALA LEU GLY ILE ARG ASP ALA ILE GLN HIS PHE SER SEQRES 14 A 330 GLN ASP GLU VAL LYS VAL LYS TRP PRO ASN ASP ILE TYR SEQRES 15 A 330 ILE ASP ASN GLY LYS VAL CYS GLY PHE LEU THR GLU MET SEQRES 16 A 330 VAL ALA ASN ASN ASP GLY ILE GLU ALA ILE ILE CYS GLY SEQRES 17 A 330 ILE GLY ILE ASN LEU THR GLN GLN LEU GLU ASN PHE ASP SEQRES 18 A 330 GLU SER ILE ARG HIS ARG ALA THR SER ILE GLN LEU HIS SEQRES 19 A 330 ASP LYS ASN LYS LEU ASP ARG TYR GLN PHE LEU GLU ARG SEQRES 20 A 330 LEU LEU GLN GLU ILE GLU LYS ARG TYR ASN GLN PHE LEU SEQRES 21 A 330 THR LEU PRO PHE SER GLU ILE ARG GLU GLU TYR ILE ALA SEQRES 22 A 330 ALA SER ASN ILE TRP ASN ARG THR LEU LEU PHE THR GLU SEQRES 23 A 330 ASN ASP LYS GLN PHE LYS GLY GLN ALA ILE ASP LEU ASP SEQRES 24 A 330 TYR ASP GLY TYR LEU ILE VAL ARG ASP GLU ALA GLY GLU SEQRES 25 A 330 SER HIS ARG LEU ILE SER ALA ASP ILE ASP PHE GLY HIS SEQRES 26 A 330 HIS HIS HIS HIS HIS HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET BQX A 406 70 HETNAM GOL GLYCEROL HETNAM BQX 1-[4-(6-AMINOPURIN-9-YL)BUTYLSULFAMOYL]-3-[4-[(4~{S})- HETNAM 2 BQX 2-OXIDANYLIDENE-1,3,3~{A},4,6,6~{A}-HEXAHYDROTHIENO[3, HETNAM 3 BQX 4-D]IMIDAZOL-4-YL]BUTYL]UREA HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 5(C3 H8 O3) FORMUL 7 BQX C19 H30 N10 O4 S2 FORMUL 8 HOH *464(H2 O) HELIX 1 AA1 TYR A 4 LYS A 16 1 13 HELIX 2 AA2 SER A 21 ASN A 30 1 10 HELIX 3 AA3 SER A 32 GLU A 46 1 15 HELIX 4 AA4 TYR A 68 SER A 78 1 11 HELIX 5 AA5 SER A 93 LEU A 102 1 10 HELIX 6 AA6 GLY A 121 ARG A 125 5 5 HELIX 7 AA7 ALA A 146 SER A 148 5 3 HELIX 8 AA8 MET A 149 HIS A 167 1 19 HELIX 9 AA9 GLN A 216 PHE A 220 5 5 HELIX 10 AB1 ILE A 224 ALA A 228 5 5 HELIX 11 AB2 ILE A 231 ASP A 235 5 5 HELIX 12 AB3 ASP A 240 LEU A 262 1 23 HELIX 13 AB4 PRO A 263 GLU A 266 5 4 HELIX 14 AB5 ILE A 267 ALA A 274 1 8 SHEET 1 AA1 2 LYS A 49 VAL A 53 0 SHEET 2 AA1 2 GLY A 57 GLN A 62 -1 O GLN A 61 N LYS A 49 SHEET 1 AA2 7 PHE A 84 ILE A 91 0 SHEET 2 AA2 7 PHE A 109 GLN A 116 1 O LEU A 112 N GLU A 86 SHEET 3 AA2 7 GLY A 134 LEU A 141 -1 O VAL A 140 N PHE A 109 SHEET 4 AA2 7 GLY A 201 ASN A 212 -1 O ILE A 209 N MET A 137 SHEET 5 AA2 7 GLY A 186 ASN A 198 -1 N VAL A 196 O GLU A 203 SHEET 6 AA2 7 ASP A 180 ILE A 183 -1 N ILE A 183 O GLY A 186 SHEET 7 AA2 7 VAL A 173 LYS A 176 -1 N LYS A 174 O TYR A 182 SHEET 1 AA3 5 SER A 313 LEU A 316 0 SHEET 2 AA3 5 LEU A 304 ASP A 308 -1 N VAL A 306 O HIS A 314 SHEET 3 AA3 5 LYS A 289 LEU A 298 -1 N ASP A 297 O ILE A 305 SHEET 4 AA3 5 LEU A 282 GLU A 286 -1 N PHE A 284 O PHE A 291 SHEET 5 AA3 5 ASP A 320 ASP A 322 -1 O ASP A 322 N LEU A 283 CISPEP 1 LYS A 16 PRO A 17 0 1.31 CISPEP 2 TRP A 177 PRO A 178 0 -2.42 SITE 1 AC1 3 ASP A 235 ASN A 237 HOH A 552 SITE 1 AC2 5 LYS A 16 ASP A 240 GLN A 243 GLU A 246 SITE 2 AC2 5 HOH A 508 SITE 1 AC3 5 GLU A 27 ASN A 30 ILE A 31 HOH A 514 SITE 2 AC3 5 HOH A 528 SITE 1 AC4 6 LYS A 37 ILE A 40 ASP A 41 LYS A 44 SITE 2 AC4 6 SER A 52 HIS A 58 SITE 1 AC5 5 ILE A 272 TRP A 278 ASN A 279 HOH A 503 SITE 2 AC5 5 HOH A 593 SITE 1 AC6 25 SER A 93 THR A 94 GLN A 95 GLN A 116 SITE 2 AC6 25 GLY A 119 ARG A 120 GLY A 121 ARG A 122 SITE 3 AC6 25 ARG A 125 HIS A 126 TRP A 127 SER A 128 SITE 4 AC6 25 MET A 137 SER A 138 ASN A 179 ASP A 180 SITE 5 AC6 25 LYS A 187 GLY A 190 PHE A 191 ILE A 209 SITE 6 AC6 25 GLY A 210 ASN A 212 ILE A 224 HOH A 583 SITE 7 AC6 25 HOH A 662 CRYST1 94.031 94.031 130.977 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010635 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007635 0.00000