HEADER PLANT PROTEIN 17-DEC-18 6NE8 TITLE SOLUTION STRUCTURE OF THE THIOREDOXIN-LIKE DOMAIN OF ARABIDOPSIS NCP TITLE 2 (NUCLEAR CONTROL OF PEP ACTIVITY) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN MRL7L, COMPND 3 CHLOROPLASTIC; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PROTEIN MESOPHYLL-CELL RNAI LIBRARY LINE 7-LIKE,ATMRL7-L, COMPND 6 PROTEIN SUPPRESSOR OF VARIEGATION 4-LIKE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: MRL7L, SVR4L, AT2G31840; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NCP, NUCLEAR CONTROL OF PEP ACTIVITY, THIOREDOXIN-LIKE DOMAIN, KEYWDS 2 CHLOROPLAST BIOGENESIS, PHYTOCHROME SIGNALING, PLASTID-ENCODED RNA KEYWDS 3 POLYMERASE, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.LIU,M.CHEN,P.ZHOU REVDAT 3 15-MAY-24 6NE8 1 REMARK REVDAT 2 14-JUN-23 6NE8 1 REMARK REVDAT 1 25-DEC-19 6NE8 0 JRNL AUTH E.J.YANG,C.Y.YOO,J.LIU,H.WANG,J.CAO,F.W.LI,K.M.PRYER, JRNL AUTH 2 T.P.SUN,D.WEIGEL,P.ZHOU,M.CHEN JRNL TITL NCP ACTIVATES CHLOROPLAST TRANSCRIPTION BY CONTROLLING JRNL TITL 2 PHYTOCHROME-DEPENDENT DUAL NUCLEAR AND PLASTIDIAL SWITCHES. JRNL REF NAT COMMUN V. 10 2630 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31201314 JRNL DOI 10.1038/S41467-019-10517-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238639. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-99% 15N] REMARK 210 NCP (NUCLEAR CONTROL OF PEP REMARK 210 ACTIVITY) THIOREDOXIN-LIKE REMARK 210 DOMAIN, 25 MM HEPES, 50 MM KCL REMARK 210 (PH 7.0), 10 MM DTT, 90% H2O/10% REMARK 210 D2O; 1.2 MM [U-99% 15N] NCP REMARK 210 (NUCLEAR CONTROL OF PEP ACTIVITY) REMARK 210 THIOREDOXIN-LIKE DOMAIN, 25 MM REMARK 210 HEPES, 50 MM KCL (PH 7.0), 10 MM REMARK 210 DTT, 90% H2O/10% D2O; 1.2 MM [U- REMARK 210 99% 13C; U-99% 15N] NCP (NUCLEAR REMARK 210 CONTROL OF PEP ACTIVITY) REMARK 210 THIOREDOXIN-LIKE DOMAIN, 25 MM REMARK 210 HEPES, 50 MM KCL (PH 7.0), 10 MM REMARK 210 DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TRIPLE-RESONANCE; 4D HCCH-TOCSY; REMARK 210 4D HCCONH; 3D 1H-15N NOESY; 4D REMARK 210 13C-HMQC-NOESY-15N-HSQC; 4D 13C- REMARK 210 HMQC-NOESY-13C-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 4 -41.18 -132.69 REMARK 500 1 VAL A 21 -65.61 -120.69 REMARK 500 1 SER A 26 161.16 -48.10 REMARK 500 1 ARG A 38 76.24 49.86 REMARK 500 1 PRO A 62 99.24 -69.78 REMARK 500 1 SER A 63 159.10 -49.87 REMARK 500 1 PRO A 64 -170.27 -69.81 REMARK 500 1 PRO A 87 -175.19 -69.77 REMARK 500 1 TYR A 118 -71.79 -117.84 REMARK 500 1 ALA A 121 -176.28 -63.28 REMARK 500 1 VAL A 144 78.98 -116.75 REMARK 500 2 TYR A 36 31.16 -98.93 REMARK 500 2 LYS A 37 119.94 -165.54 REMARK 500 2 ARG A 38 75.40 51.15 REMARK 500 2 PRO A 62 98.48 -69.81 REMARK 500 2 PRO A 64 -178.87 -69.74 REMARK 500 2 PRO A 87 -178.76 -69.80 REMARK 500 2 TYR A 99 146.87 -173.07 REMARK 500 2 TYR A 118 -73.67 -114.32 REMARK 500 3 SER A 26 162.08 -48.10 REMARK 500 3 LYS A 37 119.27 -165.97 REMARK 500 3 ARG A 38 75.75 50.31 REMARK 500 3 PRO A 62 94.90 -69.76 REMARK 500 3 SER A 63 157.88 -49.01 REMARK 500 3 PRO A 64 -170.41 -69.75 REMARK 500 3 GLU A 74 53.54 -97.58 REMARK 500 3 TYR A 118 -72.97 -121.77 REMARK 500 3 VAL A 144 99.75 -60.52 REMARK 500 4 ASN A 4 -170.56 -178.66 REMARK 500 4 SER A 26 162.42 -48.09 REMARK 500 4 LYS A 37 119.33 -165.81 REMARK 500 4 ARG A 38 73.78 50.14 REMARK 500 4 PRO A 62 95.66 -69.78 REMARK 500 4 PRO A 64 -169.00 -69.78 REMARK 500 4 GLU A 74 56.48 -97.58 REMARK 500 4 LYS A 82 60.35 60.07 REMARK 500 4 PRO A 87 -179.60 -69.74 REMARK 500 4 TYR A 118 -73.39 -122.02 REMARK 500 4 ALA A 121 -176.80 -69.62 REMARK 500 5 ASN A 4 -71.37 -112.58 REMARK 500 5 VAL A 21 -71.20 -122.09 REMARK 500 5 SER A 26 161.94 -48.68 REMARK 500 5 TYR A 36 30.23 -95.89 REMARK 500 5 LYS A 37 119.51 -166.01 REMARK 500 5 ARG A 38 73.44 49.59 REMARK 500 5 PRO A 62 95.86 -69.72 REMARK 500 5 PRO A 64 -169.99 -69.79 REMARK 500 5 TYR A 99 146.73 -178.73 REMARK 500 5 TYR A 118 -73.31 -115.95 REMARK 500 6 SER A 26 160.98 -48.48 REMARK 500 REMARK 500 THIS ENTRY HAS 200 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30551 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE THIOREDOXIN-LIKE DOMAIN OF ARABIDOPSIS REMARK 900 NCP (NUCLEAR CONTROL OF PEP ACTIVITY) DBREF 6NE8 A 3 145 UNP Q9SKB6 MRL7L_ARATH 208 350 SEQADV 6NE8 SER A 0 UNP Q9SKB6 EXPRESSION TAG SEQADV 6NE8 HIS A 1 UNP Q9SKB6 EXPRESSION TAG SEQADV 6NE8 MET A 2 UNP Q9SKB6 EXPRESSION TAG SEQRES 1 A 146 SER HIS MET ASP ASN TYR ILE ARG PRO ILE LYS ASP LEU SEQRES 2 A 146 THR THR ALA GLU TRP GLU GLU ALA VAL PHE LYS ASP ILE SEQRES 3 A 146 SER PRO LEU MET VAL LEU VAL HIS ASN ARG TYR LYS ARG SEQRES 4 A 146 PRO LYS GLU ASN GLU LYS PHE ARG GLU GLU LEU GLU LYS SEQRES 5 A 146 ALA ILE GLN VAL ILE TRP ASN CYS GLY LEU PRO SER PRO SEQRES 6 A 146 ARG CYS VAL ALA VAL ASP ALA VAL VAL GLU THR ASP LEU SEQRES 7 A 146 VAL SER ALA LEU LYS VAL SER VAL PHE PRO GLU ILE ILE SEQRES 8 A 146 PHE THR LYS ALA GLY LYS ILE LEU TYR ARG GLU LYS GLY SEQRES 9 A 146 ILE ARG THR ALA ASP GLU LEU SER LYS ILE MET ALA PHE SEQRES 10 A 146 PHE TYR TYR GLY ALA ALA LYS PRO PRO CYS LEU ASN GLY SEQRES 11 A 146 VAL VAL ASN SER GLN GLU GLN ILE PRO LEU VAL ASP VAL SEQRES 12 A 146 SER VAL ASN HELIX 1 AA1 THR A 13 ALA A 15 5 3 HELIX 2 AA2 GLU A 16 PHE A 22 1 7 HELIX 3 AA3 LYS A 40 GLY A 60 1 21 HELIX 4 AA4 GLU A 74 LYS A 82 1 9 HELIX 5 AA5 THR A 106 TYR A 119 1 14 HELIX 6 AA6 PRO A 124 GLY A 129 1 6 SHEET 1 AA1 6 LYS A 10 ASP A 11 0 SHEET 2 AA1 6 ARG A 65 ASP A 70 1 O ALA A 68 N LYS A 10 SHEET 3 AA1 6 LEU A 28 HIS A 33 1 N LEU A 31 O VAL A 67 SHEET 4 AA1 6 GLU A 88 THR A 92 -1 O ILE A 90 N VAL A 30 SHEET 5 AA1 6 LYS A 96 GLU A 101 -1 O LEU A 98 N PHE A 91 SHEET 6 AA1 6 GLU A 135 GLN A 136 -1 O GLU A 135 N ILE A 97 CISPEP 1 PHE A 86 PRO A 87 1 0.00 CISPEP 2 PHE A 86 PRO A 87 2 0.04 CISPEP 3 PHE A 86 PRO A 87 3 -0.02 CISPEP 4 PHE A 86 PRO A 87 4 -0.04 CISPEP 5 PHE A 86 PRO A 87 5 0.09 CISPEP 6 PHE A 86 PRO A 87 6 -0.02 CISPEP 7 PHE A 86 PRO A 87 7 0.00 CISPEP 8 PHE A 86 PRO A 87 8 0.04 CISPEP 9 PHE A 86 PRO A 87 9 -0.04 CISPEP 10 PHE A 86 PRO A 87 10 -0.03 CISPEP 11 PHE A 86 PRO A 87 11 0.02 CISPEP 12 PHE A 86 PRO A 87 12 0.01 CISPEP 13 PHE A 86 PRO A 87 13 0.05 CISPEP 14 PHE A 86 PRO A 87 14 -0.04 CISPEP 15 PHE A 86 PRO A 87 15 0.04 CISPEP 16 PHE A 86 PRO A 87 16 0.04 CISPEP 17 PHE A 86 PRO A 87 17 0.03 CISPEP 18 PHE A 86 PRO A 87 18 -0.02 CISPEP 19 PHE A 86 PRO A 87 19 -0.03 CISPEP 20 PHE A 86 PRO A 87 20 0.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1