HEADER VIRAL PROTEIN/INHIBITOR 17-DEC-18 6NEL TITLE 4-(2-(4-FLUOROPHENYL)-5-HYDROXY-6-OXO-1,6-DIHYDROPYRIDIN-3-YL)BENZOIC TITLE 2 ACID BOUND TO INFLUENZA 2009 PH1N1 ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_COMMON: A/LUXEMBOURG/43/2009(H1N1); SOURCE 4 ORGANISM_TAXID: 655278; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PCDF KEYWDS INFLUENZA ENDONUCLEASE INHIBITOR CHELATOR, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,E.ARNOLD REVDAT 5 11-OCT-23 6NEL 1 REMARK LINK REVDAT 4 18-DEC-19 6NEL 1 REMARK REVDAT 3 03-JUL-19 6NEL 1 JRNL REVDAT 2 29-MAY-19 6NEL 1 JRNL REVDAT 1 01-MAY-19 6NEL 0 JRNL AUTH H.Y.SAGONG,J.D.BAUMAN,A.NOGALES,L.MARTINEZ-SOBRIDO,E.ARNOLD, JRNL AUTH 2 E.J.LAVOIE JRNL TITL ARYL AND ARYLALKYL SUBSTITUTED 3-HYDROXYPYRIDIN-2(1H)-ONES: JRNL TITL 2 SYNTHESIS AND EVALUATION AS INHIBITORS OF INFLUENZA A JRNL TITL 3 ENDONUCLEASE. JRNL REF CHEMMEDCHEM V. 14 1204 2019 JRNL REFN ESSN 1860-7187 JRNL PMID 30983160 JRNL DOI 10.1002/CMDC.201900084 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 19858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.6512 - 3.8254 0.97 2855 137 0.1873 0.2108 REMARK 3 2 3.8254 - 3.0364 0.98 2741 158 0.2001 0.2256 REMARK 3 3 3.0364 - 2.6526 0.97 2697 138 0.2064 0.2380 REMARK 3 4 2.6526 - 2.4101 0.96 2623 145 0.2109 0.2061 REMARK 3 5 2.4101 - 2.2374 0.96 2678 122 0.2330 0.2395 REMARK 3 6 2.2374 - 2.1055 0.96 2641 145 0.2340 0.2529 REMARK 3 7 2.1055 - 2.0000 0.96 2638 140 0.2852 0.3025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1743 REMARK 3 ANGLE : 0.540 2322 REMARK 3 CHIRALITY : 0.042 242 REMARK 3 PLANARITY : 0.006 299 REMARK 3 DIHEDRAL : 10.418 1033 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5694 18.4967 -18.4065 REMARK 3 T TENSOR REMARK 3 T11: 0.5450 T22: 0.5705 REMARK 3 T33: 0.3572 T12: -0.1569 REMARK 3 T13: 0.0274 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 4.5309 L22: 4.7519 REMARK 3 L33: 4.1592 L12: 1.6931 REMARK 3 L13: 0.6082 L23: -1.6295 REMARK 3 S TENSOR REMARK 3 S11: -0.5328 S12: 0.6878 S13: -0.2674 REMARK 3 S21: -0.6616 S22: 0.3287 S23: -0.1283 REMARK 3 S31: 0.4036 S32: 0.1577 S33: 0.1965 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7669 18.7107 -8.7306 REMARK 3 T TENSOR REMARK 3 T11: 0.3313 T22: 0.2828 REMARK 3 T33: 0.2710 T12: -0.1139 REMARK 3 T13: -0.0490 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 3.6152 L22: 3.2635 REMARK 3 L33: 0.5552 L12: 2.0122 REMARK 3 L13: -0.2132 L23: -0.0929 REMARK 3 S TENSOR REMARK 3 S11: -0.2994 S12: 0.4838 S13: 0.0003 REMARK 3 S21: -0.4192 S22: 0.0420 S23: -0.2222 REMARK 3 S31: -0.2168 S32: 0.5204 S33: 0.1835 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2819 4.8772 4.5173 REMARK 3 T TENSOR REMARK 3 T11: 0.7228 T22: 0.4824 REMARK 3 T33: 0.6302 T12: -0.2058 REMARK 3 T13: -0.1607 T23: 0.2535 REMARK 3 L TENSOR REMARK 3 L11: 1.7234 L22: 1.9585 REMARK 3 L33: 0.4821 L12: -0.9482 REMARK 3 L13: 0.5491 L23: -0.1021 REMARK 3 S TENSOR REMARK 3 S11: 0.2643 S12: -0.8702 S13: -0.8282 REMARK 3 S21: 0.5188 S22: -0.2940 S23: -0.6630 REMARK 3 S31: 1.0126 S32: -0.2753 S33: 0.4374 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3719 14.2272 -3.6474 REMARK 3 T TENSOR REMARK 3 T11: 0.3159 T22: 0.3279 REMARK 3 T33: 0.3285 T12: -0.1140 REMARK 3 T13: 0.0034 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 3.1617 L22: 2.4658 REMARK 3 L33: 4.6773 L12: -0.1000 REMARK 3 L13: 1.4978 L23: 1.4442 REMARK 3 S TENSOR REMARK 3 S11: 0.2760 S12: -0.4602 S13: 0.2063 REMARK 3 S21: 0.3854 S22: -0.4562 S23: 0.4102 REMARK 3 S31: 0.2585 S32: -0.6421 S33: 0.0024 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9395 26.8306 -1.0747 REMARK 3 T TENSOR REMARK 3 T11: 0.4858 T22: 0.3804 REMARK 3 T33: 0.6964 T12: 0.0355 REMARK 3 T13: -0.0891 T23: -0.1728 REMARK 3 L TENSOR REMARK 3 L11: 2.3780 L22: 6.1533 REMARK 3 L33: 5.8407 L12: -1.4170 REMARK 3 L13: -0.7484 L23: -1.9245 REMARK 3 S TENSOR REMARK 3 S11: 0.1316 S12: -0.2250 S13: 1.0425 REMARK 3 S21: -0.2277 S22: -0.3630 S23: 1.0797 REMARK 3 S31: -0.6534 S32: -0.7787 S33: 0.2415 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0779 26.0657 -1.6532 REMARK 3 T TENSOR REMARK 3 T11: 0.4739 T22: 0.3984 REMARK 3 T33: 0.4031 T12: -0.1699 REMARK 3 T13: -0.0884 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 4.7414 L22: 2.9302 REMARK 3 L33: 4.4466 L12: 2.3417 REMARK 3 L13: -1.5294 L23: 0.0923 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: -0.3256 S13: 0.5850 REMARK 3 S21: -0.0016 S22: -0.0984 S23: 0.2611 REMARK 3 S31: -0.7295 S32: 0.4536 S33: -0.0020 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238641. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 66.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 2.77800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4M5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE FORMED BY MIXING IN A REMARK 280 1:1 RATIO THE PURIFIED ENDONUCLEASE PROTEIN (5 MG/ML) WITH REMARK 280 CRYSTALLIZATION BUFFER CONTAINING 200 MM MES PH 6.7, 27% PEG8000, REMARK 280 200 MM AMMONIUM SULFATE, 1 MM MANGANESE CHLORIDE, 10 MM REMARK 280 MAGNESIUM ACETATE, 10 MM TAURINE, AND 50 MM SODIUM FLUORIDE. REMARK 280 CRYSTALS MATURED TO FULL SIZE IN ONE TO TWO WEEKS AT 20 DEGREES REMARK 280 C., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.28500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.28500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.12500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.63500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.12500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.63500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.28500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.12500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.63500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.28500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.12500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.63500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 463 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 TRP A -25 REMARK 465 ARG A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP A 67 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MN MN A 301 H041 KKV A 304 1.33 REMARK 500 HG1 THR A 151 OE1 GLU A 153 1.55 REMARK 500 O HOH A 479 O HOH A 491 2.19 REMARK 500 OG SER A 65 OD1 ASP A 67 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 -2.07 80.28 REMARK 500 GLU A 141 -10.61 80.57 REMARK 500 THR A 162 -61.18 67.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 93.4 REMARK 620 3 GLU A 119 OE2 178.2 87.7 REMARK 620 4 ILE A 120 O 90.1 93.5 88.5 REMARK 620 5 KKV A 304 O01 86.1 97.4 95.1 168.6 REMARK 620 6 KKV A 304 O04 92.7 172.8 86.3 90.4 79.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 89.7 REMARK 620 3 KKV A 304 O01 96.9 87.1 REMARK 620 4 HOH A 413 O 175.5 87.1 86.1 REMARK 620 5 HOH A 446 O 85.4 89.7 176.1 91.4 REMARK 620 6 HOH A 462 O 87.3 177.0 92.9 95.8 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 GLU A 80 OE2 54.9 REMARK 620 3 HOH A 449 O 147.6 92.8 REMARK 620 4 HOH A 462 O 73.4 128.2 138.5 REMARK 620 5 HOH A 480 O 139.4 146.9 66.6 73.6 REMARK 620 6 HOH A 490 O 111.0 107.6 78.4 93.0 93.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KKV A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 DBREF 6NEL A 1 204 UNP C6H0Y9 C6H0Y9_9INFA 1 204 SEQADV 6NEL MET A -36 UNP C6H0Y9 INITIATING METHIONINE SEQADV 6NEL ALA A -35 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -34 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -33 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -32 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -31 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -30 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -29 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL SER A -28 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL ARG A -27 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL ALA A -26 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL TRP A -25 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL ARG A -24 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -23 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL PRO A -22 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL GLN A -21 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL PHE A -20 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL GLY A -19 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL GLY A -18 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -17 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -16 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -15 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -14 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -13 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL HIS A -12 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL ALA A -11 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL LEU A -10 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL GLU A -9 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL VAL A -8 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL LEU A -7 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL PHE A -6 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL GLN A -5 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL GLY A -4 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL PRO A -3 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL LEU A -2 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL GLY A -1 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL SER A 0 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEL VAL A 201 UNP C6H0Y9 ILE 201 CONFLICT SEQADV 6NEL ARG A 204 UNP C6H0Y9 LYS 204 CONFLICT SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS SER ARG ALA TRP ARG SEQRES 2 A 241 HIS PRO GLN PHE GLY GLY HIS HIS HIS HIS HIS HIS ALA SEQRES 3 A 241 LEU GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLU SEQRES 4 A 241 ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE VAL GLU SEQRES 5 A 241 LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU ASP PRO SEQRES 6 A 241 LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS THR HIS SEQRES 7 A 241 LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS PHE ILE SEQRES 8 A 241 ASP GLU ARG GLY GLU SER ILE ILE VAL GLU SER GLY ASP SEQRES 9 A 241 PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE ILE GLU SEQRES 10 A 241 GLY ARG ASP ARG ILE MET ALA TRP THR VAL VAL ASN SER SEQRES 11 A 241 ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS PHE LEU SEQRES 12 A 241 PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE ILE GLU SEQRES 13 A 241 ILE GLY VAL THR ARG ARG GLU VAL HIS ILE TYR TYR LEU SEQRES 14 A 241 GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR HIS ILE SEQRES 15 A 241 HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA THR LYS SEQRES 16 A 241 ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA ARG ILE SEQRES 17 A 241 LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET ALA SER SEQRES 18 A 241 ARG SER LEU TRP ASP SER PHE ARG GLN SER GLU ARG GLY SEQRES 19 A 241 GLU GLU THR VAL GLU GLU ARG HET MN A 301 1 HET MN A 302 1 HET MG A 303 1 HET KKV A 304 35 HET SO4 A 305 5 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM KKV 4-[2-(4-FLUOROPHENYL)-5-HYDROXY-6-OXO-1,6- HETNAM 2 KKV DIHYDROPYRIDIN-3-YL]BENZOIC ACID HETNAM SO4 SULFATE ION FORMUL 2 MN 2(MN 2+) FORMUL 4 MG MG 2+ FORMUL 5 KKV C18 H12 F N O4 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *94(H2 O) HELIX 1 AA1 SER A 0 PHE A 9 1 10 HELIX 2 AA2 ASN A 10 GLY A 25 1 16 HELIX 3 AA3 GLU A 31 ASP A 50 1 20 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 137 1 12 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 SER A 194 1 8 SHEET 1 AA1 3 SER A 60 ILE A 62 0 SHEET 2 AA1 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 AA1 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 AA2 5 PHE A 76 ILE A 78 0 SHEET 2 AA2 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA2 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA2 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA2 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.28 LINK OE1 GLU A 80 MN MN A 302 1555 1555 2.15 LINK OE1 GLU A 80 MG MG A 303 1555 1555 2.51 LINK OE2 GLU A 80 MG MG A 303 1555 1555 2.20 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.13 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.16 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.14 LINK O ILE A 120 MN MN A 301 1555 1555 2.13 LINK MN MN A 301 O01 KKV A 304 1555 1555 2.23 LINK MN MN A 301 O04 KKV A 304 1555 1555 2.08 LINK MN MN A 302 O01 KKV A 304 1555 1555 2.06 LINK MN MN A 302 O HOH A 413 1555 1555 2.19 LINK MN MN A 302 O HOH A 446 1555 1555 2.22 LINK MN MN A 302 O HOH A 462 1555 1555 2.16 LINK MG MG A 303 O HOH A 449 1555 1555 2.20 LINK MG MG A 303 O HOH A 462 1555 1555 2.47 LINK MG MG A 303 O HOH A 480 1555 1555 2.24 LINK MG MG A 303 O HOH A 490 1555 1555 2.26 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 KKV A 304 SITE 1 AC2 7 GLU A 80 ASP A 108 MG A 303 KKV A 304 SITE 2 AC2 7 HOH A 413 HOH A 446 HOH A 462 SITE 1 AC3 7 GLU A 80 MN A 302 KKV A 304 HOH A 449 SITE 2 AC3 7 HOH A 462 HOH A 480 HOH A 490 SITE 1 AC4 21 ALA A 20 TYR A 24 LYS A 34 ALA A 37 SITE 2 AC4 21 ILE A 38 HIS A 41 GLU A 80 ASP A 108 SITE 3 AC4 21 GLU A 119 ILE A 120 ARG A 124 LYS A 134 SITE 4 AC4 21 MN A 301 MN A 302 MG A 303 HOH A 413 SITE 5 AC4 21 HOH A 416 HOH A 434 HOH A 457 HOH A 462 SITE 6 AC4 21 HOH A 468 SITE 1 AC5 6 ILE A 30 THR A 32 ASN A 33 GLU A 165 SITE 2 AC5 6 GLU A 166 HOH A 409 CRYST1 88.250 101.270 66.570 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011331 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015022 0.00000