HEADER VIRAL PROTEIN/INHIBITOR 17-DEC-18 6NEM TITLE 3-HYDROXY-5-[(NAPHTHALEN-1-YL)METHYL]-6-[4-(1H-TETRAZOL-5-YL) TITLE 2 PHENYL]PYRIDIN-2(1H)-ONE BOUND TO INFLUENZA 2009 PH1N1 ENDONUCLEASE CAVEAT 6NEM A HG CYS 8 - A O HOH 510; DIST = 0.98 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_COMMON: A/LUXEMBOURG/43/2009(H1N1); SOURCE 4 ORGANISM_TAXID: 655278; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INFLUENZA ENDONUCLEASE INHIBITOR CHELATOR, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,E.ARNOLD REVDAT 5 11-OCT-23 6NEM 1 REMARK LINK REVDAT 4 18-DEC-19 6NEM 1 REMARK REVDAT 3 03-JUL-19 6NEM 1 JRNL REVDAT 2 29-MAY-19 6NEM 1 JRNL REVDAT 1 01-MAY-19 6NEM 0 JRNL AUTH H.Y.SAGONG,J.D.BAUMAN,A.NOGALES,L.MARTINEZ-SOBRIDO,E.ARNOLD, JRNL AUTH 2 E.J.LAVOIE JRNL TITL ARYL AND ARYLALKYL SUBSTITUTED 3-HYDROXYPYRIDIN-2(1H)-ONES: JRNL TITL 2 SYNTHESIS AND EVALUATION AS INHIBITORS OF INFLUENZA A JRNL TITL 3 ENDONUCLEASE. JRNL REF CHEMMEDCHEM V. 14 1204 2019 JRNL REFN ESSN 1860-7187 JRNL PMID 30983160 JRNL DOI 10.1002/CMDC.201900084 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 41516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1596 - 4.7902 0.98 2604 132 0.1857 0.2217 REMARK 3 2 4.7902 - 3.8031 1.00 2641 138 0.1481 0.1687 REMARK 3 3 3.8031 - 3.3226 1.00 2643 142 0.1634 0.1793 REMARK 3 4 3.3226 - 3.0189 1.00 2640 143 0.1866 0.1955 REMARK 3 5 3.0189 - 2.8026 1.00 2656 141 0.1670 0.2185 REMARK 3 6 2.8026 - 2.6374 1.00 2653 141 0.1724 0.2027 REMARK 3 7 2.6374 - 2.5053 1.00 2645 141 0.1685 0.1783 REMARK 3 8 2.5053 - 2.3963 1.00 2610 141 0.1716 0.2184 REMARK 3 9 2.3963 - 2.3040 1.00 2635 139 0.1830 0.2033 REMARK 3 10 2.3040 - 2.2245 1.00 2669 138 0.1869 0.2380 REMARK 3 11 2.2245 - 2.1550 1.00 2625 140 0.1879 0.2232 REMARK 3 12 2.1550 - 2.0934 1.00 2643 138 0.2137 0.2751 REMARK 3 13 2.0934 - 2.0383 1.00 2636 144 0.2339 0.2098 REMARK 3 14 2.0383 - 1.9886 1.00 2660 139 0.2504 0.2671 REMARK 3 15 1.9886 - 1.9434 0.93 2465 134 0.2747 0.2855 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1738 REMARK 3 ANGLE : 1.098 2342 REMARK 3 CHIRALITY : 0.060 243 REMARK 3 PLANARITY : 0.007 300 REMARK 3 DIHEDRAL : 12.435 1038 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3198 18.3133 -15.7962 REMARK 3 T TENSOR REMARK 3 T11: 0.3416 T22: 0.3509 REMARK 3 T33: 0.2700 T12: -0.1505 REMARK 3 T13: -0.0354 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 4.3118 L22: 3.0814 REMARK 3 L33: 2.9630 L12: 1.7366 REMARK 3 L13: -1.8637 L23: -1.3347 REMARK 3 S TENSOR REMARK 3 S11: -0.4442 S12: 0.6366 S13: 0.0116 REMARK 3 S21: -0.5172 S22: 0.1423 S23: 0.0048 REMARK 3 S31: 0.0375 S32: 0.1567 S33: 0.2870 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1815 5.3240 0.7510 REMARK 3 T TENSOR REMARK 3 T11: 0.3986 T22: 0.3174 REMARK 3 T33: 0.2988 T12: -0.1212 REMARK 3 T13: -0.0667 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: 3.5375 L22: 4.6623 REMARK 3 L33: 7.1729 L12: -1.2652 REMARK 3 L13: 0.9826 L23: -1.7795 REMARK 3 S TENSOR REMARK 3 S11: 0.3041 S12: -0.6190 S13: -0.4916 REMARK 3 S21: 0.4414 S22: -0.2614 S23: -0.0753 REMARK 3 S31: 0.6785 S32: 0.0888 S33: -0.0495 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1127 20.9702 -2.4720 REMARK 3 T TENSOR REMARK 3 T11: 0.2119 T22: 0.2696 REMARK 3 T33: 0.3292 T12: 0.0150 REMARK 3 T13: -0.0407 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 5.4784 L22: 7.5424 REMARK 3 L33: 5.7966 L12: 1.9930 REMARK 3 L13: -0.5749 L23: -0.7411 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: -0.1623 S13: 0.6889 REMARK 3 S21: -0.0989 S22: -0.1134 S23: 0.6416 REMARK 3 S31: -0.4864 S32: -0.5852 S33: 0.0947 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9321 25.3516 -1.6806 REMARK 3 T TENSOR REMARK 3 T11: 0.3615 T22: 0.2610 REMARK 3 T33: 0.3133 T12: -0.1620 REMARK 3 T13: -0.0794 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 5.7296 L22: 3.3693 REMARK 3 L33: 6.6798 L12: 2.8625 REMARK 3 L13: -3.1251 L23: -1.1462 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: -0.1015 S13: 0.6348 REMARK 3 S21: -0.0185 S22: -0.1035 S23: 0.3479 REMARK 3 S31: -0.6339 S32: 0.1961 S33: 0.0213 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.79900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4M5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE FORMED BY MIXING IN A REMARK 280 1:1 RATIO THE PURIFIED ENDONUCLEASE PROTEIN (5 MG/ML) WITH REMARK 280 CRYSTALLIZATION BUFFER CONTAINING 200 MM MES PH 6.7, 27% PEG8000, REMARK 280 200 MM AMMONIUM SULFATE, 1 MM MANGANESE CHLORIDE, 10 MM REMARK 280 MAGNESIUM ACETATE, 10 MM TAURINE, AND 50 MM SODIUM FLUORIDE. REMARK 280 CRYSTALS MATURED TO FULL SIZE IN ONE TO TWO WEEKS AT 20 DEGREES REMARK 280 C., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.10200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.10200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.75250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.49800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.75250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.49800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.10200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.75250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.49800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.10200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.75250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.49800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 513 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 TRP A -25 REMARK 465 ARG A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP A 67 REMARK 475 PRO A 68 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS A 8 O HOH A 510 0.98 REMARK 500 HG1 THR A 151 OE1 GLU A 153 1.46 REMARK 500 OG1 THR A 151 OE1 GLU A 153 2.02 REMARK 500 O HOH A 506 O HOH A 512 2.10 REMARK 500 O HOH A 496 O HOH A 505 2.10 REMARK 500 SG CYS A 8 O HOH A 510 2.16 REMARK 500 O HOH A 500 O HOH A 517 2.18 REMARK 500 OD1 ASP A 27 O HOH A 401 2.18 REMARK 500 OG SER A 190 O HOH A 402 2.18 REMARK 500 O HOH A 447 O HOH A 485 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 -1.12 79.79 REMARK 500 SER A 65 176.52 -57.22 REMARK 500 ARG A 125 -165.51 -101.67 REMARK 500 GLU A 141 8.31 55.25 REMARK 500 THR A 162 -60.90 70.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 96.3 REMARK 620 3 GLU A 119 OE2 174.7 86.0 REMARK 620 4 ILE A 120 O 87.5 89.7 87.8 REMARK 620 5 KKS A 304 O01 86.7 105.1 97.3 164.6 REMARK 620 6 KKS A 304 O30 88.9 174.2 89.1 93.2 72.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 74 NE2 REMARK 620 2 HIS A 74 NE2 0.0 REMARK 620 3 HOH A 406 O 69.0 69.0 REMARK 620 4 HOH A 406 O 83.9 83.9 131.4 REMARK 620 5 HOH A 513 O 121.0 121.0 113.0 115.5 REMARK 620 6 HOH A 513 O 121.0 121.0 113.0 115.5 0.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 93.4 REMARK 620 3 KKS A 304 O01 98.0 91.3 REMARK 620 4 HOH A 420 O 173.9 88.7 87.6 REMARK 620 5 HOH A 441 O 87.8 91.8 173.2 86.5 REMARK 620 6 HOH A 481 O 89.2 177.3 88.9 88.6 87.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KKS A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NEL RELATED DB: PDB REMARK 900 STRUCTURE WITH RELATED INHIBITOR DBREF 6NEM A 1 204 UNP C6H0Y9 C6H0Y9_9INFA 1 204 SEQADV 6NEM MET A -36 UNP C6H0Y9 INITIATING METHIONINE SEQADV 6NEM ALA A -35 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -34 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -33 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -32 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -31 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -30 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -29 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM SER A -28 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM ARG A -27 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM ALA A -26 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM TRP A -25 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM ARG A -24 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -23 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM PRO A -22 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM GLN A -21 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM PHE A -20 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM GLY A -19 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM GLY A -18 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -17 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -16 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -15 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -14 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -13 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM HIS A -12 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM ALA A -11 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM LEU A -10 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM GLU A -9 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM VAL A -8 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM LEU A -7 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM PHE A -6 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM GLN A -5 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM GLY A -4 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM PRO A -3 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM LEU A -2 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM GLY A -1 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM SER A 0 UNP C6H0Y9 EXPRESSION TAG SEQADV 6NEM VAL A 201 UNP C6H0Y9 ILE 201 CONFLICT SEQADV 6NEM ARG A 204 UNP C6H0Y9 LYS 204 CONFLICT SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS SER ARG ALA TRP ARG SEQRES 2 A 241 HIS PRO GLN PHE GLY GLY HIS HIS HIS HIS HIS HIS ALA SEQRES 3 A 241 LEU GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLU SEQRES 4 A 241 ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE VAL GLU SEQRES 5 A 241 LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU ASP PRO SEQRES 6 A 241 LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS THR HIS SEQRES 7 A 241 LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS PHE ILE SEQRES 8 A 241 ASP GLU ARG GLY GLU SER ILE ILE VAL GLU SER GLY ASP SEQRES 9 A 241 PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE ILE GLU SEQRES 10 A 241 GLY ARG ASP ARG ILE MET ALA TRP THR VAL VAL ASN SER SEQRES 11 A 241 ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS PHE LEU SEQRES 12 A 241 PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE ILE GLU SEQRES 13 A 241 ILE GLY VAL THR ARG ARG GLU VAL HIS ILE TYR TYR LEU SEQRES 14 A 241 GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR HIS ILE SEQRES 15 A 241 HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA THR LYS SEQRES 16 A 241 ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA ARG ILE SEQRES 17 A 241 LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET ALA SER SEQRES 18 A 241 ARG SER LEU TRP ASP SER PHE ARG GLN SER GLU ARG GLY SEQRES 19 A 241 GLU GLU THR VAL GLU GLU ARG HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET KKS A 304 47 HET SO4 A 305 5 HETNAM MN MANGANESE (II) ION HETNAM KKS 3-HYDROXY-5-[(NAPHTHALEN-1-YL)METHYL]-6-[4-(1H- HETNAM 2 KKS TETRAZOL-5-YL)PHENYL]PYRIDIN-2(1H)-ONE HETNAM SO4 SULFATE ION FORMUL 2 MN 3(MN 2+) FORMUL 5 KKS C23 H17 N5 O2 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *119(H2 O) HELIX 1 AA1 SER A 0 PHE A 9 1 10 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 ASP A 50 1 20 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 SER A 194 1 8 SHEET 1 AA1 3 SER A 60 ILE A 62 0 SHEET 2 AA1 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 AA1 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 AA2 5 PHE A 76 ILE A 78 0 SHEET 2 AA2 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA2 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA2 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 AA2 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.26 LINK NE2 HIS A 74 MN MN A 303 1555 1555 2.31 LINK NE2 HIS A 74 MN MN A 303 1555 4555 2.24 LINK OE1 GLU A 80 MN MN A 302 1555 1555 2.05 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.18 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.14 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.08 LINK O ILE A 120 MN MN A 301 1555 1555 2.20 LINK MN MN A 301 O01 KKS A 304 1555 1555 2.17 LINK MN MN A 301 O30 KKS A 304 1555 1555 2.31 LINK MN MN A 302 O01 KKS A 304 1555 1555 2.17 LINK MN MN A 302 O HOH A 420 1555 1555 2.05 LINK MN MN A 302 O HOH A 441 1555 1555 2.21 LINK MN MN A 302 O HOH A 481 1555 1555 2.21 LINK MN MN A 303 O HOH A 406 1555 1555 2.09 LINK MN MN A 303 O HOH A 406 1555 4555 2.03 LINK MN MN A 303 O HOH A 513 1555 1555 2.44 LINK MN MN A 303 O HOH A 513 1555 4555 2.44 SITE 1 AC1 6 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 6 MN A 302 KKS A 304 SITE 1 AC2 7 GLU A 80 ASP A 108 MN A 301 KKS A 304 SITE 2 AC2 7 HOH A 420 HOH A 441 HOH A 481 SITE 1 AC3 3 HIS A 74 HOH A 406 HOH A 513 SITE 1 AC4 17 ALA A 20 TYR A 24 LYS A 34 ALA A 37 SITE 2 AC4 17 ILE A 38 HIS A 41 GLU A 80 ASP A 108 SITE 3 AC4 17 GLU A 119 ILE A 120 ARG A 124 LYS A 134 SITE 4 AC4 17 MN A 301 MN A 302 HOH A 413 HOH A 420 SITE 5 AC4 17 HOH A 481 SITE 1 AC5 7 ILE A 30 THR A 32 ASN A 33 GLU A 165 SITE 2 AC5 7 GLU A 166 ALA A 169 HOH A 403 CRYST1 87.505 100.996 66.204 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011428 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015105 0.00000