HEADER HYDROLASE 20-DEC-18 6NFF TITLE STRUCTURE OF X-PROLYL DIPEPTIDYL AMINOPEPTIDASE FROM LACTOBACILLUS TITLE 2 HELVETICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO DIPEPTIDYL-PEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: X-PRO DIPEPTIDYL-PEPTIDASE, X-PROLYL-DIPEPTIDYL COMPND 5 AMINOPEPTIDASE, X-PDAP; COMPND 6 EC: 3.4.14.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS HELVETICUS; SOURCE 3 ORGANISM_COMMON: LACTOBACILLUS SUNTORYEUS; SOURCE 4 ORGANISM_TAXID: 1587; SOURCE 5 GENE: PEPX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, PEPTIDASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.JUERS,N.J.BRATT,D.D.OJENNUS REVDAT 3 11-OCT-23 6NFF 1 REMARK REVDAT 2 16-OCT-19 6NFF 1 JRNL REVDAT 1 02-OCT-19 6NFF 0 JRNL AUTH D.D.OJENNUS,N.J.BRATT,K.L.JONES,D.H.JUERS JRNL TITL STRUCTURAL CHARACTERIZATION OF A PROLYL AMINODIPEPTIDASE JRNL TITL 2 (PEPX) FROM LACTOBACILLUS HELVETICUS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 75 625 2019 JRNL REFN ESSN 2053-230X JRNL PMID 31584010 JRNL DOI 10.1107/S2053230X19011774 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 85144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 4332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3289 - 6.1974 1.00 3005 160 0.1660 0.1949 REMARK 3 2 6.1974 - 4.9259 1.00 2875 146 0.1495 0.1563 REMARK 3 3 4.9259 - 4.3052 1.00 2782 171 0.1351 0.1577 REMARK 3 4 4.3052 - 3.9125 0.98 2763 136 0.1586 0.2003 REMARK 3 5 3.9125 - 3.6326 0.99 2762 165 0.1883 0.2342 REMARK 3 6 3.6326 - 3.4187 0.99 2745 151 0.2219 0.2686 REMARK 3 7 3.4187 - 3.2477 0.99 2759 136 0.2342 0.2880 REMARK 3 8 3.2477 - 3.1065 0.99 2777 137 0.2563 0.2976 REMARK 3 9 3.1065 - 2.9870 1.00 2751 144 0.2524 0.3201 REMARK 3 10 2.9870 - 2.8840 1.00 2724 154 0.2555 0.2914 REMARK 3 11 2.8840 - 2.7939 1.00 2803 120 0.2500 0.3290 REMARK 3 12 2.7939 - 2.7141 1.00 2726 168 0.2601 0.3213 REMARK 3 13 2.7141 - 2.6427 1.00 2717 168 0.2528 0.2750 REMARK 3 14 2.6427 - 2.5782 1.00 2727 159 0.2781 0.3687 REMARK 3 15 2.5782 - 2.5196 1.00 2732 161 0.2709 0.3351 REMARK 3 16 2.5196 - 2.4660 1.00 2735 146 0.2669 0.3190 REMARK 3 17 2.4660 - 2.4167 1.00 2717 157 0.2813 0.3272 REMARK 3 18 2.4167 - 2.3711 1.00 2740 138 0.2882 0.3386 REMARK 3 19 2.3711 - 2.3288 1.00 2748 149 0.2766 0.3048 REMARK 3 20 2.3288 - 2.2893 1.00 2732 132 0.2820 0.3544 REMARK 3 21 2.2893 - 2.2524 0.99 2707 138 0.3181 0.3231 REMARK 3 22 2.2524 - 2.2178 1.00 2742 138 0.3317 0.3732 REMARK 3 23 2.2178 - 2.1852 0.93 2521 142 0.3902 0.3824 REMARK 3 24 2.1852 - 2.1544 0.99 2721 130 0.3380 0.3697 REMARK 3 25 2.1544 - 2.1253 0.99 2700 159 0.3429 0.3486 REMARK 3 26 2.1253 - 2.0977 0.98 2687 143 0.3498 0.3743 REMARK 3 27 2.0977 - 2.0715 0.85 2325 99 0.4009 0.4568 REMARK 3 28 2.0715 - 2.0465 1.00 2708 153 0.4122 0.4366 REMARK 3 29 2.0465 - 2.0227 0.67 1840 102 0.4451 0.4239 REMARK 3 30 2.0227 - 2.0000 0.94 2541 130 0.4756 0.4468 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6630 REMARK 3 ANGLE : 0.874 8954 REMARK 3 CHIRALITY : 0.051 943 REMARK 3 PLANARITY : 0.005 1155 REMARK 3 DIHEDRAL : 11.946 3909 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION NOVA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87344 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1LNS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.3 MG/ML PROTEIN AGAINST 6.8-8.2% REMARK 280 PEG3350, 75 MM POTASSIUM PHOSPHATE, PH 6.0, 1 MM DTT, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.29700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 77.31500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 77.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.94550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 77.31500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 77.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.64850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 77.31500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.31500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.94550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 77.31500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.31500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.64850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.29700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 154.63000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 154.63000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.29700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1411 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1049 O HOH A 1349 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 45.84 -109.55 REMARK 500 HIS A 100 -55.58 73.64 REMARK 500 ASN A 236 27.10 -144.50 REMARK 500 GLU A 252 -8.84 -55.91 REMARK 500 ASP A 255 68.62 60.67 REMARK 500 ALA A 304 -153.06 77.81 REMARK 500 ALA A 350 46.19 -96.79 REMARK 500 SER A 363 -125.48 67.71 REMARK 500 ASN A 485 -76.25 -90.91 REMARK 500 PRO A 513 -126.39 -90.42 REMARK 500 ASN A 591 39.79 -156.76 REMARK 500 LYS A 661 169.34 178.41 REMARK 500 SER A 764 -75.65 -132.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 194 OD1 REMARK 620 2 ASP A 196 OD1 77.1 REMARK 620 3 ASP A 198 OD1 78.9 87.6 REMARK 620 4 LYS A 200 O 90.9 163.7 79.2 REMARK 620 5 ASP A 202 OD1 108.2 93.5 172.9 100.8 REMARK 620 6 HOH A1137 O 155.4 97.9 76.8 88.5 96.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 812 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 813 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 814 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 815 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 816 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 817 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 818 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 819 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 820 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 821 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 822 DBREF 6NFF A 1 793 UNP Q59485 PEPX_LACHE 1 793 SEQADV 6NFF MET A -19 UNP Q59485 EXPRESSION TAG SEQADV 6NFF GLY A -18 UNP Q59485 EXPRESSION TAG SEQADV 6NFF SER A -17 UNP Q59485 EXPRESSION TAG SEQADV 6NFF SER A -16 UNP Q59485 EXPRESSION TAG SEQADV 6NFF HIS A -15 UNP Q59485 EXPRESSION TAG SEQADV 6NFF HIS A -14 UNP Q59485 EXPRESSION TAG SEQADV 6NFF HIS A -13 UNP Q59485 EXPRESSION TAG SEQADV 6NFF HIS A -12 UNP Q59485 EXPRESSION TAG SEQADV 6NFF HIS A -11 UNP Q59485 EXPRESSION TAG SEQADV 6NFF HIS A -10 UNP Q59485 EXPRESSION TAG SEQADV 6NFF SER A -9 UNP Q59485 EXPRESSION TAG SEQADV 6NFF SER A -8 UNP Q59485 EXPRESSION TAG SEQADV 6NFF GLY A -7 UNP Q59485 EXPRESSION TAG SEQADV 6NFF LEU A -6 UNP Q59485 EXPRESSION TAG SEQADV 6NFF VAL A -5 UNP Q59485 EXPRESSION TAG SEQADV 6NFF PRO A -4 UNP Q59485 EXPRESSION TAG SEQADV 6NFF ARG A -3 UNP Q59485 EXPRESSION TAG SEQADV 6NFF GLY A -2 UNP Q59485 EXPRESSION TAG SEQADV 6NFF SER A -1 UNP Q59485 EXPRESSION TAG SEQADV 6NFF HIS A 0 UNP Q59485 EXPRESSION TAG SEQADV 6NFF GLY A 36 UNP Q59485 SER 36 CONFLICT SEQADV 6NFF ARG A 347 UNP Q59485 GLN 347 CONFLICT SEQADV 6NFF SER A 401 UNP Q59485 LEU 401 CONFLICT SEQADV 6NFF GLY A 462 UNP Q59485 ARG 462 CONFLICT SEQRES 1 A 813 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 813 LEU VAL PRO ARG GLY SER HIS MET LYS TYR ASN GLN TYR SEQRES 3 A 813 ALA TYR VAL GLU THR ASP PHE GLN GLN GLN VAL LYS GLU SEQRES 4 A 813 LEU ILE ASP ILE ASN PHE LEU PRO LYS ASN TYR GLN VAL SEQRES 5 A 813 TRP ASP PHE GLY SER LEU LEU ALA LYS LEU VAL LYS ASN SEQRES 6 A 813 ALA ILE ALA GLU ALA LYS THR ASP ALA ALA LYS ASN ALA SEQRES 7 A 813 LYS LEU ALA GLU PHE ALA VAL SER ASP HIS GLN THR LEU SEQRES 8 A 813 ALA ASP PHE LEU LYS GLU LYS PRO THR GLU ILE GLY THR SEQRES 9 A 813 LYS GLN PHE TYR ASN VAL ALA LEU GLN LEU LEU GLY TYR SEQRES 10 A 813 HIS VAL HIS TYR ASP TYR ASP PHE ALA ASP PRO THR GLY SEQRES 11 A 813 PHE MET GLN ARG ASN ALA LEU PRO PHE LEU GLN ASP ILE SEQRES 12 A 813 SER ASP ASN GLN LYS LEU ILE SER ALA PHE TYR ARG LEU SEQRES 13 A 813 LEU ASN THR ARG ALA LYS ASN GLY GLN ILE LEU LEU ASP SEQRES 14 A 813 VAL MET ALA GLY LYS GLY TYR PHE THR GLN PHE TRP GLY SEQRES 15 A 813 GLN ASN LYS PHE LYS PHE PHE ASN GLY LYS SER ILE PRO SEQRES 16 A 813 VAL PHE ASP THR ASN LYS VAL ILE ARG GLU VAL VAL TYR SEQRES 17 A 813 VAL GLU THR ASP LEU ASP THR ASP HIS ASP GLY LYS SER SEQRES 18 A 813 ASP LEU ILE GLN VAL THR VAL PHE ARG PRO GLU GLU THR SEQRES 19 A 813 ASN LYS GLY LEU LYS VAL PRO ALA LEU TYR THR ALA SER SEQRES 20 A 813 PRO TYR PHE GLY GLY ILE ILE ALA ASN GLU LYS ARG ASN SEQRES 21 A 813 HIS ASN VAL ASP GLU ASN LEU SER ASP SER THR GLU TRP SEQRES 22 A 813 ASN ASP PRO GLN TYR VAL HIS SER PRO ILE VAL LYS ALA SEQRES 23 A 813 GLU LYS PRO ASP GLY SER SER ARG PRO ALA THR GLU GLU SEQRES 24 A 813 ALA VAL HIS LYS SER SER TYR PRO LEU ASN GLU TYR MET SEQRES 25 A 813 LEU ALA ARG GLY PHE ALA SER VAL PHE ALA GLY ALA ILE SEQRES 26 A 813 GLY THR ARG GLY SER ASP GLY VAL ARG ILE THR GLY ALA SEQRES 27 A 813 PRO GLU GLU THR GLU SER ALA ALA ALA VAL ILE GLU TRP SEQRES 28 A 813 LEU HIS GLY ASP ARG VAL ALA TYR THR ASP ARG THR ARG SEQRES 29 A 813 THR VAL ARG THR THR ALA ASP TRP CYS ASN GLY ASN ILE SEQRES 30 A 813 GLY MET THR GLY ARG SER TYR LEU GLY THR LEU GLN ILE SEQRES 31 A 813 ALA ILE ALA THR THR GLY VAL LYS GLY LEU LYS THR VAL SEQRES 32 A 813 VAL SER GLU ALA ALA ILE SER SER TRP TYR ASP TYR TYR SEQRES 33 A 813 ARG GLU HIS GLY SER VAL ILE ALA PRO GLU ALA CYS GLN SEQRES 34 A 813 GLY GLU ASP LEU ASP LEU LEU ALA GLU THR CYS GLN SER SEQRES 35 A 813 ASN LEU TRP ASP ALA GLY SER TYR LEU LYS ILE LYS PRO SEQRES 36 A 813 GLU TYR ASP LYS MET GLN LYS GLN LEU ARG GLU LYS GLU SEQRES 37 A 813 ASP ARG ASN THR GLY GLN TYR SER ASP PHE TRP GLU ALA SEQRES 38 A 813 GLY ASN TYR ARG HIS HIS ALA ASP GLY ILE LYS CYS SER SEQRES 39 A 813 TRP ILE SER VAL HIS GLY LEU ASN ASP TRP ASN VAL LYS SEQRES 40 A 813 PRO LYS ASN VAL TYR LYS ILE TRP GLN LEU VAL LYS LYS SEQRES 41 A 813 MET PRO MET LYS HIS HIS LEU PHE LEU HIS GLN GLY PRO SEQRES 42 A 813 HIS TYR ASN MET ASN ASN LEU VAL SER ILE ASP PHE THR SEQRES 43 A 813 ASP LEU MET ASN LEU TRP PHE VAL HIS GLU LEU LEU GLY SEQRES 44 A 813 ILE GLU ASN ASN ALA TYR ASN GLN TRP PRO THR VAL MET SEQRES 45 A 813 ILE GLN ASP ASN LEU GLN ALA ASP LYS TRP HIS GLU GLU SEQRES 46 A 813 PRO ASP TRP SER ASN ASP LEU GLY GLN GLU LYS ILE TYR SEQRES 47 A 813 TYR PRO THR ASP GLU GLY GLU LEU PHE GLN ASP GLY ASN SEQRES 48 A 813 GLY LYS ALA GLN LYS SER PHE THR ASP VAL GLY GLY ILE SEQRES 49 A 813 GLU PHE LYS LYS ALA GLY ILE SER GLU SER ASP TRP GLN SEQRES 50 A 813 TYR LYS PHE ILE CYS GLY ASP GLU LYS TRP ALA LYS PRO SEQRES 51 A 813 SER LEU ARG PHE GLU THR ASP GLU PHE THR HIS PRO THR SEQRES 52 A 813 THR ILE VAL GLY ARG PRO GLU VAL LYS VAL ARG VAL SER SEQRES 53 A 813 ALA SER LEU PRO LYS GLY GLU ILE SER VAL ALA LEU VAL SEQRES 54 A 813 GLU LEU GLY GLU ARG GLN ARG LEU THR ALA THR PRO LYS SEQRES 55 A 813 PHE LEU MET HIS GLY GLY GLN GLU LEU GLY TYR ARG PHE SEQRES 56 A 813 GLY THR ASP THR LEU GLN GLU PHE VAL PRO ASP LYS LYS SEQRES 57 A 813 THR LYS ALA LYS LEU ILE THR LYS ALA HIS MET ASN LEU SEQRES 58 A 813 GLN ASN PHE LYS ASP MET LYS LYS PRO GLU ALA ILE ASP SEQRES 59 A 813 ALA ASP LYS PHE TYR ASP LEU ASP PHE LEU LEU GLN PRO SEQRES 60 A 813 THR TYR TYR THR ILE PRO SER GLY SER LYS LEU ALA LEU SEQRES 61 A 813 ILE ILE TYR SER THR ASP GLN GLY MET THR LYS ARG PRO SEQRES 62 A 813 LEU GLU ASP GLU THR TYR THR ILE ASP LEU ALA ASN THR SEQRES 63 A 813 GLU ILE LYS PHE TYR GLU LYS HET CA A 801 1 HET PO4 A 802 5 HET PO4 A 803 5 HET PO4 A 804 5 HET PO4 A 805 5 HET EDO A 806 4 HET EDO A 807 4 HET EDO A 808 4 HET EDO A 809 4 HET EDO A 810 4 HET EDO A 811 4 HET EDO A 812 4 HET EDO A 813 4 HET EDO A 814 4 HET EDO A 815 4 HET EDO A 816 4 HET EDO A 817 4 HET EDO A 818 4 HET EDO A 819 4 HET EDO A 820 4 HET EDO A 821 4 HET EDO A 822 4 HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA CA 2+ FORMUL 3 PO4 4(O4 P 3-) FORMUL 7 EDO 17(C2 H6 O2) FORMUL 24 HOH *561(H2 O) HELIX 1 AA1 ASP A 12 ILE A 23 1 12 HELIX 2 AA2 ASN A 29 TRP A 33 5 5 HELIX 3 AA3 ASP A 34 ILE A 47 1 14 HELIX 4 AA4 THR A 52 LEU A 60 1 9 HELIX 5 AA5 LEU A 71 GLU A 77 1 7 HELIX 6 AA6 GLY A 83 LEU A 95 1 13 HELIX 7 AA7 ASP A 107 ASN A 115 1 9 HELIX 8 AA8 ASP A 125 ASN A 138 1 14 HELIX 9 AA9 ILE A 146 LYS A 154 1 9 HELIX 10 AB1 GLY A 155 TRP A 161 5 7 HELIX 11 AB2 ASP A 178 VAL A 182 5 5 HELIX 12 AB3 PRO A 211 GLY A 217 5 7 HELIX 13 AB4 ASN A 236 ASN A 240 5 5 HELIX 14 AB5 ASP A 249 TRP A 253 5 5 HELIX 15 AB6 TYR A 286 ALA A 294 1 9 HELIX 16 AB7 ALA A 318 HIS A 333 1 16 HELIX 17 AB8 SER A 363 THR A 375 1 13 HELIX 18 AB9 TRP A 392 TYR A 396 1 5 HELIX 19 AC1 ASP A 412 CYS A 420 1 9 HELIX 20 AC2 GLN A 421 TRP A 425 5 5 HELIX 21 AC3 ASP A 426 ASP A 449 1 24 HELIX 22 AC4 SER A 456 ALA A 461 1 6 HELIX 23 AC5 GLY A 462 ILE A 471 5 10 HELIX 24 AC6 PRO A 488 LYS A 499 1 12 HELIX 25 AC7 ASP A 524 GLY A 539 1 16 HELIX 26 AC8 ASN A 543 GLN A 547 5 5 HELIX 27 AC9 SER A 569 GLY A 573 5 5 HELIX 28 AD1 GLY A 603 GLY A 610 1 8 HELIX 29 AD2 SER A 612 GLY A 623 1 12 HELIX 30 AD3 ASP A 624 LYS A 629 1 6 HELIX 31 AD4 GLN A 722 PHE A 724 5 3 SHEET 1 AA1 2 ALA A 64 SER A 66 0 SHEET 2 AA1 2 GLN A 69 THR A 70 -1 O GLN A 69 N VAL A 65 SHEET 1 AA2 2 PHE A 168 PHE A 169 0 SHEET 2 AA2 2 LYS A 172 SER A 173 -1 O LYS A 172 N PHE A 169 SHEET 1 AA3 3 GLU A 278 GLU A 279 0 SHEET 2 AA3 3 ILE A 183 GLU A 190 -1 N VAL A 186 O GLU A 278 SHEET 3 AA3 3 ALA A 338 TYR A 339 -1 O TYR A 339 N TYR A 188 SHEET 1 AA411 GLU A 278 GLU A 279 0 SHEET 2 AA411 ILE A 183 GLU A 190 -1 N VAL A 186 O GLU A 278 SHEET 3 AA411 LEU A 203 ARG A 210 -1 O VAL A 208 N GLU A 185 SHEET 4 AA411 ALA A 298 ALA A 302 -1 O PHE A 301 N THR A 207 SHEET 5 AA411 VAL A 220 ALA A 226 1 N THR A 225 O VAL A 300 SHEET 6 AA411 CYS A 353 MET A 359 1 O GLY A 358 N TYR A 224 SHEET 7 AA411 LEU A 380 GLU A 386 1 O LYS A 381 N ILE A 357 SHEET 8 AA411 SER A 474 GLY A 480 1 O ILE A 476 N SER A 385 SHEET 9 AA411 HIS A 505 HIS A 510 1 O PHE A 508 N SER A 477 SHEET 10 AA411 VAL A 551 GLN A 554 1 O GLN A 554 N LEU A 509 SHEET 11 AA411 TRP A 562 GLU A 565 -1 O HIS A 563 N ILE A 553 SHEET 1 AA5 2 ARG A 397 GLU A 398 0 SHEET 2 AA5 2 SER A 401 VAL A 402 -1 O SER A 401 N GLU A 398 SHEET 1 AA6 5 LEU A 586 PHE A 587 0 SHEET 2 AA6 5 GLN A 574 PRO A 580 -1 N TYR A 579 O PHE A 587 SHEET 3 AA6 5 GLU A 777 LYS A 793 -1 O ILE A 788 N TYR A 578 SHEET 4 AA6 5 THR A 643 ALA A 657 -1 N GLU A 650 O LYS A 789 SHEET 5 AA6 5 TYR A 739 LEU A 744 -1 O TYR A 739 N VAL A 655 SHEET 1 AA7 4 GLN A 595 ASP A 600 0 SHEET 2 AA7 4 GLU A 777 LYS A 793 -1 O ILE A 781 N LYS A 596 SHEET 3 AA7 4 THR A 643 ALA A 657 -1 N GLU A 650 O LYS A 789 SHEET 4 AA7 4 THR A 748 ILE A 752 -1 O ILE A 752 N THR A 643 SHEET 1 AA8 4 SER A 631 GLU A 635 0 SHEET 2 AA8 4 LYS A 757 TYR A 763 -1 O ILE A 762 N LEU A 632 SHEET 3 AA8 4 GLU A 663 ARG A 674 -1 N LEU A 671 O LYS A 757 SHEET 4 AA8 4 THR A 709 ASN A 720 -1 O THR A 715 N LEU A 668 SHEET 1 AA9 2 LYS A 682 GLU A 690 0 SHEET 2 AA9 2 THR A 697 GLU A 702 -1 O GLU A 702 N LYS A 682 LINK OD1 ASP A 194 CA CA A 801 1555 1555 2.42 LINK OD1 ASP A 196 CA CA A 801 1555 1555 2.34 LINK OD1 ASP A 198 CA CA A 801 1555 1555 2.49 LINK O LYS A 200 CA CA A 801 1555 1555 2.30 LINK OD1 ASP A 202 CA CA A 801 1555 1555 2.38 LINK CA CA A 801 O HOH A1137 1555 1555 2.33 SITE 1 AC1 6 ASP A 194 ASP A 196 ASP A 198 LYS A 200 SITE 2 AC1 6 ASP A 202 HOH A1137 SITE 1 AC2 7 HIS A 399 LYS A 489 LYS A 493 ARG A 648 SITE 2 AC2 7 HOH A1032 HOH A1148 HOH A1189 SITE 1 AC3 8 ASN A 463 ARG A 465 HIS A 466 LYS A 493 SITE 2 AC3 8 HOH A 927 HOH A1029 HOH A1121 HOH A1204 SITE 1 AC4 4 HIS A 241 ASN A 242 HOH A 965 HOH A1049 SITE 1 AC5 2 HIS A 686 HOH A1019 SITE 1 AC6 5 LEU A 288 ASN A 518 THR A 526 GLN A 689 SITE 2 AC6 5 EDO A 810 SITE 1 AC7 5 GLN A 93 LYS A 154 HOH A 907 HOH A1062 SITE 2 AC7 5 HOH A1155 SITE 1 AC8 4 VAL A 281 GLU A 690 HOH A 950 HOH A1243 SITE 1 AC9 6 HIS A 100 ASP A 104 PHE A 105 TYR A 430 SITE 2 AC9 6 HOH A 998 HOH A1182 SITE 1 AD1 7 GLN A 145 TYR A 291 ASN A 518 THR A 526 SITE 2 AD1 7 EDO A 806 HOH A 925 HOH A1048 SITE 1 AD2 5 ASN A 24 PRO A 27 LYS A 41 ASN A 45 SITE 2 AD2 5 ASP A 589 SITE 1 AD3 6 TYR A 229 SER A 363 TYR A 364 TYR A 395 SITE 2 AD3 6 EDO A 822 HOH A1051 SITE 1 AD4 4 ASN A 57 PHE A 639 HOH A 914 HOH A 918 SITE 1 AD5 5 GLU A 49 LYS A 59 GLN A 205 HOH A1000 SITE 2 AD5 5 HOH A1156 SITE 1 AD6 7 GLU A 237 ASN A 240 CYS A 408 GLU A 411 SITE 2 AD6 7 EDO A 822 HOH A1071 HOH A1114 SITE 1 AD7 3 GLU A 564 GLU A 565 HOH A 980 SITE 1 AD8 6 LYS A 51 LYS A 154 GLY A 155 GLU A 279 SITE 2 AD8 6 TYR A 693 EDO A 820 SITE 1 AD9 5 THR A 316 ALA A 318 PHE A 458 GLY A 462 SITE 2 AD9 5 HOH A1297 SITE 1 AE1 4 GLY A 584 LEU A 632 ARG A 633 PHE A 634 SITE 1 AE2 7 ALA A 48 LYS A 51 GLY A 155 TYR A 156 SITE 2 AE2 7 EDO A 817 HOH A1021 HOH A1106 SITE 1 AE3 6 LEU A 247 SER A 248 SER A 250 ASN A 451 SITE 2 AE3 6 LYS A 771 HOH A1192 SITE 1 AE4 7 TYR A 395 CYS A 408 GLU A 411 EDO A 812 SITE 2 AE4 7 EDO A 815 HOH A1051 HOH A1240 CRYST1 154.630 154.630 106.594 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006467 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009381 0.00000