HEADER SIGNALING PROTEIN 21-DEC-18 6NFZ TITLE CRYSTAL STRUCTURE OF DIPHOSPHORYLATED HPK1 KINASE DOMAIN IN COMPLEX TITLE 2 WITH SUNITINIB IN THE ACTIVE STATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEMATOPOIETIC PROGENITOR KINASE,MAPK/ERK KINASE KINASE COMPND 5 KINASE 1,MEKKK 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP4K1, HPK1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS KINASE, ACTIVE STATE, DIMER, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.JOHNSON,M.MCTIGUE,C.N.CRONIN REVDAT 5 30-OCT-24 6NFZ 1 COMPND HETNAM REVDAT 4 26-JUN-19 6NFZ 1 JRNL REVDAT 3 19-JUN-19 6NFZ 1 JRNL REVDAT 2 08-MAY-19 6NFZ 1 JRNL REVDAT 1 01-MAY-19 6NFZ 0 JRNL AUTH E.JOHNSON,M.MCTIGUE,R.A.GALLEGO,T.W.JOHNSON,S.TIMOFEEVSKI, JRNL AUTH 2 M.MAESTRE,T.S.FISHER,R.KANIA,S.SAWASDIKOSOL,S.BURAKOFF, JRNL AUTH 3 C.N.CRONIN JRNL TITL MULTIPLE CONFORMATIONAL STATES OF THE HPK1 KINASE DOMAIN IN JRNL TITL 2 COMPLEX WITH SUNITINIB REVEAL THE STRUCTURAL CHANGES JRNL TITL 3 ACCOMPANYING HPK1 TRANS-REGULATION. JRNL REF J.BIOL.CHEM. V. 294 9029 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31018963 JRNL DOI 10.1074/JBC.AC119.007466 REMARK 2 REMARK 2 RESOLUTION. 2.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5200 - 5.0678 1.00 2788 137 0.1838 0.2225 REMARK 3 2 5.0678 - 4.0240 1.00 2699 151 0.1776 0.2048 REMARK 3 3 4.0240 - 3.5158 1.00 2701 132 0.2112 0.2620 REMARK 3 4 3.5158 - 3.1945 1.00 2685 133 0.2533 0.3088 REMARK 3 5 3.1945 - 2.9656 1.00 2635 154 0.2791 0.3449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4525 REMARK 3 ANGLE : 0.958 6116 REMARK 3 CHIRALITY : 0.035 674 REMARK 3 PLANARITY : 0.003 762 REMARK 3 DIHEDRAL : 18.818 1705 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000236778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.966 REMARK 200 RESOLUTION RANGE LOW (A) : 99.995 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.19600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM FLUORIDE, 20% PEG 3350, REMARK 280 100NL WELL + 100NL PROTEIN @ 22MG/ML, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 286.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 74.96600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.28164 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.25133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 74.96600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 43.28164 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.25133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 74.96600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 43.28164 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.25133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 74.96600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 43.28164 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.25133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 74.96600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 43.28164 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.25133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 74.96600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 43.28164 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.25133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.56328 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 104.50267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 86.56328 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 104.50267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 86.56328 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 104.50267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 86.56328 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 104.50267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 86.56328 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 104.50267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 86.56328 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 104.50267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 VAL A 3 REMARK 465 VAL A 4 REMARK 465 ASP A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 25 REMARK 465 GLY A 26 REMARK 465 LYS A 49 REMARK 465 MET A 50 REMARK 465 GLU A 51 REMARK 465 PRO A 52 REMARK 465 ASP A 53 REMARK 465 ASP A 54 REMARK 465 ASP A 55 REMARK 465 VAL A 56 REMARK 465 SER A 57 REMARK 465 LEU A 82 REMARK 465 TRP A 83 REMARK 465 LEU A 84 REMARK 465 GLN A 85 REMARK 465 LYS A 86 REMARK 465 ASN A 293 REMARK 465 PRO A 294 REMARK 465 GLY A 295 REMARK 465 LYS A 296 REMARK 465 GLY A 297 REMARK 465 PRO A 298 REMARK 465 SER A 299 REMARK 465 ILE A 300 REMARK 465 GLY A 301 REMARK 465 ASP A 302 REMARK 465 ILE A 303 REMARK 465 GLU A 304 REMARK 465 ASP A 305 REMARK 465 GLU A 306 REMARK 465 GLU A 307 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 VAL B 3 REMARK 465 VAL B 4 REMARK 465 GLY B 26 REMARK 465 THR B 27 REMARK 465 TYR B 28 REMARK 465 ASP B 54 REMARK 465 ASP B 55 REMARK 465 VAL B 56 REMARK 465 SER B 57 REMARK 465 THR B 58 REMARK 465 ALA B 164 REMARK 465 TPO B 165 REMARK 465 LEU B 166 REMARK 465 ASN B 293 REMARK 465 PRO B 294 REMARK 465 GLY B 295 REMARK 465 LYS B 296 REMARK 465 GLY B 297 REMARK 465 PRO B 298 REMARK 465 SER B 299 REMARK 465 ILE B 300 REMARK 465 GLY B 301 REMARK 465 ASP B 302 REMARK 465 ILE B 303 REMARK 465 GLU B 304 REMARK 465 ASP B 305 REMARK 465 GLU B 306 REMARK 465 GLU B 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 28 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 MET A 47 CG SD CE REMARK 470 THR A 58 OG1 CG2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LEU A 87 CG CD1 CD2 REMARK 470 ASP B 53 CG OD1 OD2 REMARK 470 LEU B 59 CG CD1 CD2 REMARK 470 GLN B 60 CG CD OE1 NE2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 ASP A 101 H21 B49 A 401 1.31 REMARK 500 HA3 GLY A 29 O MET A 47 1.43 REMARK 500 H LEU B 20 O LYS B 33 1.47 REMARK 500 O ASP A 137 HD22 ASN A 142 1.55 REMARK 500 OD1 ASP B 18 HZ3 LYS B 37 1.55 REMARK 500 HD21 ASN B 146 OE1 GLU B 150 1.58 REMARK 500 O PHE B 156 HG SER B 159 1.58 REMARK 500 O HIS A 271 HG SER A 275 1.59 REMARK 500 CA GLY A 29 O MET A 47 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 17 -159.29 -131.06 REMARK 500 TYR A 28 -124.11 63.11 REMARK 500 ARG A 136 -9.45 72.34 REMARK 500 ASP A 155 80.12 58.53 REMARK 500 PHE A 156 31.70 -96.32 REMARK 500 LEU A 211 -3.86 66.35 REMARK 500 LEU A 255 51.10 -101.00 REMARK 500 ARG B 70 72.38 -160.05 REMARK 500 ASP B 137 35.62 -144.70 REMARK 500 ASN B 193 -159.87 -143.26 REMARK 500 LEU B 211 -5.29 67.46 REMARK 500 LYS B 238 -73.15 -71.29 REMARK 500 LEU B 291 21.35 -79.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B49 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B49 B 9001 DBREF 6NFZ A 1 307 UNP Q92918 M4K1_HUMAN 1 307 DBREF 6NFZ B 1 307 UNP Q92918 M4K1_HUMAN 1 307 SEQADV 6NFZ GLY A -1 UNP Q92918 EXPRESSION TAG SEQADV 6NFZ SER A 0 UNP Q92918 EXPRESSION TAG SEQADV 6NFZ GLY B -1 UNP Q92918 EXPRESSION TAG SEQADV 6NFZ SER B 0 UNP Q92918 EXPRESSION TAG SEQRES 1 A 309 GLY SER MET ASP VAL VAL ASP PRO ASP ILE PHE ASN ARG SEQRES 2 A 309 ASP PRO ARG ASP HIS TYR ASP LEU LEU GLN ARG LEU GLY SEQRES 3 A 309 GLY GLY THR TYR GLY GLU VAL PHE LYS ALA ARG ASP LYS SEQRES 4 A 309 VAL SER GLY ASP LEU VAL ALA LEU LYS MET VAL LYS MET SEQRES 5 A 309 GLU PRO ASP ASP ASP VAL SER THR LEU GLN LYS GLU ILE SEQRES 6 A 309 LEU ILE LEU LYS THR CYS ARG HIS ALA ASN ILE VAL ALA SEQRES 7 A 309 TYR HIS GLY SER TYR LEU TRP LEU GLN LYS LEU TRP ILE SEQRES 8 A 309 CYS MET GLU PHE CYS GLY ALA GLY SER LEU GLN ASP ILE SEQRES 9 A 309 TYR GLN VAL THR GLY SER LEU SER GLU LEU GLN ILE SER SEQRES 10 A 309 TYR VAL CYS ARG GLU VAL LEU GLN GLY LEU ALA TYR LEU SEQRES 11 A 309 HIS SER GLN LYS LYS ILE HIS ARG ASP ILE LYS GLY ALA SEQRES 12 A 309 ASN ILE LEU ILE ASN ASP ALA GLY GLU VAL ARG LEU ALA SEQRES 13 A 309 ASP PHE GLY ILE SER ALA GLN ILE GLY ALA TPO LEU ALA SEQRES 14 A 309 ARG ARG LEU SEP PHE ILE GLY THR PRO TYR TRP MET ALA SEQRES 15 A 309 PRO GLU VAL ALA ALA VAL ALA LEU LYS GLY GLY TYR ASN SEQRES 16 A 309 GLU LEU CYS ASP ILE TRP SER LEU GLY ILE THR ALA ILE SEQRES 17 A 309 GLU LEU ALA GLU LEU GLN PRO PRO LEU PHE ASP VAL HIS SEQRES 18 A 309 PRO LEU ARG VAL LEU PHE LEU MET THR LYS SER GLY TYR SEQRES 19 A 309 GLN PRO PRO ARG LEU LYS GLU LYS GLY LYS TRP SER ALA SEQRES 20 A 309 ALA PHE HIS ASN PHE ILE LYS VAL THR LEU THR LYS SER SEQRES 21 A 309 PRO LYS LYS ARG PRO SER ALA THR LYS MET LEU SER HIS SEQRES 22 A 309 GLN LEU VAL SER GLN PRO GLY LEU ASN ARG GLY LEU ILE SEQRES 23 A 309 LEU ASP LEU LEU ASP LYS LEU LYS ASN PRO GLY LYS GLY SEQRES 24 A 309 PRO SER ILE GLY ASP ILE GLU ASP GLU GLU SEQRES 1 B 309 GLY SER MET ASP VAL VAL ASP PRO ASP ILE PHE ASN ARG SEQRES 2 B 309 ASP PRO ARG ASP HIS TYR ASP LEU LEU GLN ARG LEU GLY SEQRES 3 B 309 GLY GLY THR TYR GLY GLU VAL PHE LYS ALA ARG ASP LYS SEQRES 4 B 309 VAL SER GLY ASP LEU VAL ALA LEU LYS MET VAL LYS MET SEQRES 5 B 309 GLU PRO ASP ASP ASP VAL SER THR LEU GLN LYS GLU ILE SEQRES 6 B 309 LEU ILE LEU LYS THR CYS ARG HIS ALA ASN ILE VAL ALA SEQRES 7 B 309 TYR HIS GLY SER TYR LEU TRP LEU GLN LYS LEU TRP ILE SEQRES 8 B 309 CYS MET GLU PHE CYS GLY ALA GLY SER LEU GLN ASP ILE SEQRES 9 B 309 TYR GLN VAL THR GLY SER LEU SER GLU LEU GLN ILE SER SEQRES 10 B 309 TYR VAL CYS ARG GLU VAL LEU GLN GLY LEU ALA TYR LEU SEQRES 11 B 309 HIS SER GLN LYS LYS ILE HIS ARG ASP ILE LYS GLY ALA SEQRES 12 B 309 ASN ILE LEU ILE ASN ASP ALA GLY GLU VAL ARG LEU ALA SEQRES 13 B 309 ASP PHE GLY ILE SER ALA GLN ILE GLY ALA TPO LEU ALA SEQRES 14 B 309 ARG ARG LEU SEP PHE ILE GLY THR PRO TYR TRP MET ALA SEQRES 15 B 309 PRO GLU VAL ALA ALA VAL ALA LEU LYS GLY GLY TYR ASN SEQRES 16 B 309 GLU LEU CYS ASP ILE TRP SER LEU GLY ILE THR ALA ILE SEQRES 17 B 309 GLU LEU ALA GLU LEU GLN PRO PRO LEU PHE ASP VAL HIS SEQRES 18 B 309 PRO LEU ARG VAL LEU PHE LEU MET THR LYS SER GLY TYR SEQRES 19 B 309 GLN PRO PRO ARG LEU LYS GLU LYS GLY LYS TRP SER ALA SEQRES 20 B 309 ALA PHE HIS ASN PHE ILE LYS VAL THR LEU THR LYS SER SEQRES 21 B 309 PRO LYS LYS ARG PRO SER ALA THR LYS MET LEU SER HIS SEQRES 22 B 309 GLN LEU VAL SER GLN PRO GLY LEU ASN ARG GLY LEU ILE SEQRES 23 B 309 LEU ASP LEU LEU ASP LYS LEU LYS ASN PRO GLY LYS GLY SEQRES 24 B 309 PRO SER ILE GLY ASP ILE GLU ASP GLU GLU MODRES 6NFZ TPO A 165 THR MODIFIED RESIDUE MODRES 6NFZ SEP A 171 SER MODIFIED RESIDUE MODRES 6NFZ SEP B 171 SER MODIFIED RESIDUE HET TPO A 165 16 HET SEP A 171 14 HET SEP B 171 13 HET B49 A 401 56 HET B49 B9001 56 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM B49 N-[2-(DIETHYLAMINO)ETHYL]-5-[(Z)-(5-FLUORO-2-OXO-1,2- HETNAM 2 B49 DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-2,4-DIMETHYL-1H- HETNAM 3 B49 PYRROLE-3-CARBO XAMIDE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE HETSYN B49 SUNITINIB FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 B49 2(C22 H27 F N4 O2) HELIX 1 AA1 ASP A 12 HIS A 16 5 5 HELIX 2 AA2 LYS A 61 LYS A 67 1 7 HELIX 3 AA3 SER A 98 GLY A 107 1 10 HELIX 4 AA4 SER A 110 GLN A 131 1 22 HELIX 5 AA5 LYS A 139 ALA A 141 5 3 HELIX 6 AA6 THR A 175 MET A 179 5 5 HELIX 7 AA7 ALA A 180 ALA A 185 1 6 HELIX 8 AA8 GLU A 194 LEU A 211 1 18 HELIX 9 AA9 HIS A 219 MET A 227 1 9 HELIX 10 AB1 SER A 244 LEU A 255 1 12 HELIX 11 AB2 SER A 258 ARG A 262 5 5 HELIX 12 AB3 SER A 264 LEU A 269 1 6 HELIX 13 AB4 ARG A 281 LYS A 292 1 12 HELIX 14 AB5 ASP B 12 ASP B 15 5 4 HELIX 15 AB6 GLN B 60 THR B 68 1 9 HELIX 16 AB7 SER B 98 GLY B 107 1 10 HELIX 17 AB8 SER B 110 GLN B 131 1 22 HELIX 18 AB9 LYS B 139 ALA B 141 5 3 HELIX 19 AC1 THR B 175 MET B 179 5 5 HELIX 20 AC2 ALA B 180 ALA B 185 1 6 HELIX 21 AC3 ALA B 185 GLY B 190 1 6 HELIX 22 AC4 LEU B 195 LEU B 211 1 17 HELIX 23 AC5 HIS B 219 LYS B 229 1 11 HELIX 24 AC6 SER B 244 LEU B 255 1 12 HELIX 25 AC7 SER B 264 LEU B 269 1 6 HELIX 26 AC8 HIS B 271 GLN B 276 1 6 HELIX 27 AC9 ARG B 281 LYS B 290 1 10 SHEET 1 AA1 5 GLN A 21 LEU A 23 0 SHEET 2 AA1 5 VAL A 31 ARG A 35 -1 O VAL A 31 N LEU A 23 SHEET 3 AA1 5 LEU A 42 MET A 47 -1 O VAL A 43 N ALA A 34 SHEET 4 AA1 5 TRP A 88 GLU A 92 -1 O MET A 91 N ALA A 44 SHEET 5 AA1 5 TYR A 77 SER A 80 -1 N GLY A 79 O CYS A 90 SHEET 1 AA2 2 LYS A 133 ILE A 134 0 SHEET 2 AA2 2 ALA A 160 GLN A 161 -1 O ALA A 160 N ILE A 134 SHEET 1 AA3 2 ILE A 143 ILE A 145 0 SHEET 2 AA3 2 VAL A 151 LEU A 153 -1 O ARG A 152 N LEU A 144 SHEET 1 AA4 5 TYR B 17 ARG B 22 0 SHEET 2 AA4 5 GLU B 30 ASP B 36 -1 O LYS B 33 N LEU B 20 SHEET 3 AA4 5 LEU B 42 LYS B 49 -1 O MET B 47 N GLU B 30 SHEET 4 AA4 5 LYS B 86 MET B 91 -1 O MET B 91 N ALA B 44 SHEET 5 AA4 5 TYR B 77 TRP B 83 -1 N TYR B 81 O TRP B 88 SHEET 1 AA5 2 LYS B 133 ILE B 134 0 SHEET 2 AA5 2 ALA B 160 GLN B 161 -1 O ALA B 160 N ILE B 134 SHEET 1 AA6 2 ILE B 143 ILE B 145 0 SHEET 2 AA6 2 VAL B 151 LEU B 153 -1 O ARG B 152 N LEU B 144 LINK C ALA A 164 N TPO A 165 1555 1555 1.33 LINK C TPO A 165 N LEU A 166 1555 1555 1.33 LINK C LEU A 170 N SEP A 171 1555 1555 1.33 LINK C SEP A 171 N PHE A 172 1555 1555 1.33 LINK C LEU B 170 N SEP B 171 1555 1555 1.33 LINK C SEP B 171 N PHE B 172 1555 1555 1.33 SITE 1 AC1 10 LEU A 23 GLY A 24 VAL A 31 MET A 91 SITE 2 AC1 10 GLU A 92 CYS A 94 GLY A 95 GLY A 97 SITE 3 AC1 10 ASP A 101 LEU A 144 SITE 1 AC2 11 LEU B 23 ALA B 44 LYS B 46 VAL B 75 SITE 2 AC2 11 MET B 91 GLU B 92 PHE B 93 CYS B 94 SITE 3 AC2 11 GLY B 95 ASP B 101 LEU B 144 CRYST1 149.932 149.932 156.754 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006670 0.003851 0.000000 0.00000 SCALE2 0.000000 0.007701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006379 0.00000 CONECT 2134 2142 CONECT 2142 2134 2143 CONECT 2143 2142 2144 2151 2153 CONECT 2144 2143 2145 2146 2154 CONECT 2145 2144 2155 2156 2157 CONECT 2146 2144 2147 CONECT 2147 2146 2148 2149 2150 CONECT 2148 2147 CONECT 2149 2147 CONECT 2150 2147 CONECT 2151 2143 2152 2158 CONECT 2152 2151 CONECT 2153 2143 CONECT 2154 2144 CONECT 2155 2145 CONECT 2156 2145 CONECT 2157 2145 CONECT 2158 2151 CONECT 2237 2254 CONECT 2254 2237 2255 2264 CONECT 2255 2254 2256 2258 2265 CONECT 2256 2255 2257 2266 2267 CONECT 2257 2256 2260 CONECT 2258 2255 2259 2268 CONECT 2259 2258 CONECT 2260 2257 2261 2262 2263 CONECT 2261 2260 CONECT 2262 2260 CONECT 2263 2260 CONECT 2264 2254 CONECT 2265 2255 CONECT 2266 2256 CONECT 2267 2256 CONECT 2268 2258 CONECT 6648 6665 CONECT 6665 6648 6666 CONECT 6666 6665 6667 6669 6675 CONECT 6667 6666 6668 6676 6677 CONECT 6668 6667 6671 CONECT 6669 6666 6670 6678 CONECT 6670 6669 CONECT 6671 6668 6672 6673 6674 CONECT 6672 6671 CONECT 6673 6671 CONECT 6674 6671 CONECT 6675 6666 CONECT 6676 6667 CONECT 6677 6667 CONECT 6678 6669 CONECT 8638 8650 8660 8661 8662 CONECT 8639 8640 8643 8663 CONECT 8640 8639 8651 8664 CONECT 8641 8643 8644 8665 CONECT 8642 8648 8652 8653 CONECT 8643 8639 8641 8659 CONECT 8644 8641 8645 8651 CONECT 8645 8644 8646 8649 CONECT 8646 8645 8655 8657 CONECT 8647 8653 8656 8658 CONECT 8648 8642 8666 8667 8668 CONECT 8649 8645 8652 8669 CONECT 8650 8638 8653 8654 CONECT 8651 8640 8644 8655 CONECT 8652 8642 8649 8654 CONECT 8653 8642 8647 8650 CONECT 8654 8650 8652 8671 CONECT 8655 8646 8651 8673 CONECT 8656 8647 8670 8675 CONECT 8657 8646 CONECT 8658 8647 CONECT 8659 8643 CONECT 8660 8638 CONECT 8661 8638 CONECT 8662 8638 CONECT 8663 8639 CONECT 8664 8640 CONECT 8665 8641 CONECT 8666 8648 CONECT 8667 8648 CONECT 8668 8648 CONECT 8669 8649 CONECT 8670 8656 8672 8680 8681 CONECT 8671 8654 CONECT 8672 8670 8674 8682 8683 CONECT 8673 8655 CONECT 8674 8672 8676 8677 CONECT 8675 8656 CONECT 8676 8674 8679 8684 8685 CONECT 8677 8674 8678 8686 8687 CONECT 8678 8677 8688 8689 8690 CONECT 8679 8676 8691 8692 8693 CONECT 8680 8670 CONECT 8681 8670 CONECT 8682 8672 CONECT 8683 8672 CONECT 8684 8676 CONECT 8685 8676 CONECT 8686 8677 CONECT 8687 8677 CONECT 8688 8678 CONECT 8689 8678 CONECT 8690 8678 CONECT 8691 8679 CONECT 8692 8679 CONECT 8693 8679 CONECT 8694 8706 8716 8717 8718 CONECT 8695 8696 8699 8719 CONECT 8696 8695 8707 8720 CONECT 8697 8699 8700 8721 CONECT 8698 8704 8708 8709 CONECT 8699 8695 8697 8715 CONECT 8700 8697 8701 8707 CONECT 8701 8700 8702 8705 CONECT 8702 8701 8711 8713 CONECT 8703 8709 8712 8714 CONECT 8704 8698 8722 8723 8724 CONECT 8705 8701 8708 8725 CONECT 8706 8694 8709 8710 CONECT 8707 8696 8700 8711 CONECT 8708 8698 8705 8710 CONECT 8709 8698 8703 8706 CONECT 8710 8706 8708 8727 CONECT 8711 8702 8707 8729 CONECT 8712 8703 8726 8731 CONECT 8713 8702 CONECT 8714 8703 CONECT 8715 8699 CONECT 8716 8694 CONECT 8717 8694 CONECT 8718 8694 CONECT 8719 8695 CONECT 8720 8696 CONECT 8721 8697 CONECT 8722 8704 CONECT 8723 8704 CONECT 8724 8704 CONECT 8725 8705 CONECT 8726 8712 8728 8736 8737 CONECT 8727 8710 CONECT 8728 8726 8730 8738 8739 CONECT 8729 8711 CONECT 8730 8728 8732 8733 CONECT 8731 8712 CONECT 8732 8730 8735 8740 8741 CONECT 8733 8730 8734 8742 8743 CONECT 8734 8733 8744 8745 8746 CONECT 8735 8732 8747 8748 8749 CONECT 8736 8726 CONECT 8737 8726 CONECT 8738 8728 CONECT 8739 8728 CONECT 8740 8732 CONECT 8741 8732 CONECT 8742 8733 CONECT 8743 8733 CONECT 8744 8734 CONECT 8745 8734 CONECT 8746 8734 CONECT 8747 8735 CONECT 8748 8735 CONECT 8749 8735 MASTER 401 0 5 27 18 0 6 6 4345 2 161 48 END