HEADER HYDROLASE 23-DEC-18 6NHS TITLE CRYSTAL STRUCTURE OF THE BETA LACTAMASE CLASS D YBXI FROM NOSTOC COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC SP. (STRAIN PCC 7120 / SAG 25.82 / UTEX SOURCE 3 2576); SOURCE 4 ORGANISM_TAXID: 103690; SOURCE 5 STRAIN: PCC 7120 / SAG 25.82 / UTEX 2576; SOURCE 6 GENE: ALL2480; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS BETA LACTAMASE CLASS D, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, HYDROLASE, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,M.ENDRES,G.BABNIGG,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 18-DEC-19 6NHS 1 REMARK REVDAT 1 16-JAN-19 6NHS 0 JRNL AUTH Y.KIM,C.TESAR,M.ENDRES,G.BABNIGG,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE BETA LACTAMASE CLASS D YBXI FROM JRNL TITL 2 NOSTOC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 20664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1412 - 3.8185 0.99 3022 141 0.1580 0.2095 REMARK 3 2 3.8185 - 3.0313 1.00 2848 151 0.1600 0.1834 REMARK 3 3 3.0313 - 2.6482 0.99 2808 134 0.1677 0.2071 REMARK 3 4 2.6482 - 2.4061 0.99 2781 143 0.1692 0.1942 REMARK 3 5 2.4061 - 2.2337 0.99 2752 144 0.1681 0.2139 REMARK 3 6 2.2337 - 2.1020 0.99 2746 148 0.1600 0.2140 REMARK 3 7 2.1020 - 1.9967 0.98 2717 129 0.1866 0.2112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2073 REMARK 3 ANGLE : 0.670 2796 REMARK 3 CHIRALITY : 0.046 297 REMARK 3 PLANARITY : 0.004 366 REMARK 3 DIHEDRAL : 15.272 1225 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2412 7.0927 -2.9959 REMARK 3 T TENSOR REMARK 3 T11: 0.6434 T22: 0.3657 REMARK 3 T33: 0.5687 T12: -0.0846 REMARK 3 T13: -0.2739 T23: 0.1325 REMARK 3 L TENSOR REMARK 3 L11: 2.0910 L22: 1.5887 REMARK 3 L33: 2.6648 L12: -0.1641 REMARK 3 L13: -0.9834 L23: 0.8718 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: 0.0270 S13: -0.6264 REMARK 3 S21: -0.1950 S22: 0.1949 S23: 0.3700 REMARK 3 S31: 0.9202 S32: -0.1707 S33: -0.1203 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0512 31.3599 -2.6080 REMARK 3 T TENSOR REMARK 3 T11: 0.2686 T22: 0.2543 REMARK 3 T33: 0.2543 T12: -0.0627 REMARK 3 T13: -0.0564 T23: 0.0549 REMARK 3 L TENSOR REMARK 3 L11: 0.7048 L22: 1.7075 REMARK 3 L33: 1.2118 L12: -0.1168 REMARK 3 L13: 0.3268 L23: -0.9432 REMARK 3 S TENSOR REMARK 3 S11: 0.0782 S12: -0.1523 S13: -0.1032 REMARK 3 S21: -0.0282 S22: -0.0476 S23: -0.1324 REMARK 3 S31: 0.0695 S32: 0.0917 S33: 0.0162 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2776 28.8180 6.2711 REMARK 3 T TENSOR REMARK 3 T11: 0.2830 T22: 0.3344 REMARK 3 T33: 0.2541 T12: -0.0569 REMARK 3 T13: -0.0576 T23: 0.1108 REMARK 3 L TENSOR REMARK 3 L11: 1.1229 L22: 1.7791 REMARK 3 L33: 0.8377 L12: -0.6157 REMARK 3 L13: 0.2032 L23: -0.0764 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: -0.4077 S13: -0.3289 REMARK 3 S21: 0.1798 S22: 0.1757 S23: 0.2199 REMARK 3 S31: 0.1395 S32: -0.2369 S33: -0.1581 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4712 26.1774 -7.2501 REMARK 3 T TENSOR REMARK 3 T11: 0.3843 T22: 0.2993 REMARK 3 T33: 0.3696 T12: -0.0788 REMARK 3 T13: -0.2093 T23: 0.1277 REMARK 3 L TENSOR REMARK 3 L11: 4.6994 L22: 1.7682 REMARK 3 L33: 1.3467 L12: 2.1564 REMARK 3 L13: 0.4026 L23: 1.1956 REMARK 3 S TENSOR REMARK 3 S11: 0.3311 S12: -0.1222 S13: -0.2509 REMARK 3 S21: -0.3108 S22: -0.1053 S23: 0.3541 REMARK 3 S31: 0.1906 S32: -0.3031 S33: -0.1348 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1412 22.9755 -6.7741 REMARK 3 T TENSOR REMARK 3 T11: 0.4028 T22: 0.2854 REMARK 3 T33: 0.3291 T12: -0.0506 REMARK 3 T13: -0.1500 T23: 0.1280 REMARK 3 L TENSOR REMARK 3 L11: 3.1745 L22: 0.5829 REMARK 3 L33: 1.2088 L12: -0.0760 REMARK 3 L13: 0.5105 L23: 0.5398 REMARK 3 S TENSOR REMARK 3 S11: 0.1250 S12: -0.1099 S13: 0.0092 REMARK 3 S21: -0.4442 S22: 0.0006 S23: 0.1814 REMARK 3 S31: 0.1321 S32: -0.0246 S33: -0.0717 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7328 16.2667 -8.0218 REMARK 3 T TENSOR REMARK 3 T11: 0.4694 T22: 0.4389 REMARK 3 T33: 0.5093 T12: 0.0337 REMARK 3 T13: -0.0099 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 2.8125 L22: 0.3385 REMARK 3 L33: 3.6164 L12: -0.7214 REMARK 3 L13: -0.1747 L23: 0.1400 REMARK 3 S TENSOR REMARK 3 S11: 0.2277 S12: 0.3496 S13: 0.1672 REMARK 3 S21: 0.0203 S22: 0.1618 S23: 0.1284 REMARK 3 S31: -0.1976 S32: 0.0838 S33: -0.3346 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7803 20.0538 -3.0227 REMARK 3 T TENSOR REMARK 3 T11: 0.3452 T22: 0.2820 REMARK 3 T33: 0.3542 T12: -0.0728 REMARK 3 T13: -0.1435 T23: 0.1265 REMARK 3 L TENSOR REMARK 3 L11: 1.6112 L22: 1.1236 REMARK 3 L33: 0.9736 L12: 0.5420 REMARK 3 L13: 0.3837 L23: -0.3458 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: -0.0834 S13: 0.1141 REMARK 3 S21: -0.3666 S22: 0.1810 S23: 0.2807 REMARK 3 S31: 0.2469 S32: -0.1218 S33: -0.0811 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3714 15.9360 -2.4819 REMARK 3 T TENSOR REMARK 3 T11: 0.3863 T22: 0.2911 REMARK 3 T33: 0.3807 T12: -0.0914 REMARK 3 T13: -0.1714 T23: 0.1000 REMARK 3 L TENSOR REMARK 3 L11: 3.0485 L22: 1.9002 REMARK 3 L33: 1.9377 L12: -0.1847 REMARK 3 L13: -0.2317 L23: -0.3627 REMARK 3 S TENSOR REMARK 3 S11: -0.1083 S12: -0.1984 S13: -0.4223 REMARK 3 S21: -0.1817 S22: 0.2485 S23: 0.2040 REMARK 3 S31: 0.5099 S32: -0.2260 S33: -0.2209 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2115 13.1100 -9.2269 REMARK 3 T TENSOR REMARK 3 T11: 0.6229 T22: 0.3303 REMARK 3 T33: 0.4776 T12: -0.1064 REMARK 3 T13: -0.2855 T23: 0.1276 REMARK 3 L TENSOR REMARK 3 L11: 2.7091 L22: 1.6884 REMARK 3 L33: 0.2029 L12: 0.3793 REMARK 3 L13: 0.7019 L23: -0.0846 REMARK 3 S TENSOR REMARK 3 S11: 0.1109 S12: 0.5088 S13: -0.3185 REMARK 3 S21: -0.8138 S22: 0.1382 S23: 0.2995 REMARK 3 S31: 0.5038 S32: -0.1958 S33: -0.1585 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 23.30 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 23.80 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M BIS-TRIS PH 6.5, 45%(V/V) REMARK 280 PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.80133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.90067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.80133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.90067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.80133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 24.90067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 49.80133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.90067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 58.25100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 100.89369 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -24.90067 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 58.25100 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 100.89369 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -24.90067 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 478 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 498 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 522 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 25 REMARK 465 ASN A 26 REMARK 465 ALA A 27 REMARK 465 ARG A 28 REMARK 465 ASP A 29 REMARK 465 MSE A 30 REMARK 465 PRO A 31 REMARK 465 GLY A 32 REMARK 465 HIS A 33 REMARK 465 SER A 34 REMARK 465 GLN A 35 REMARK 465 GLU A 36 REMARK 465 ILE A 37 REMARK 465 GLN A 38 REMARK 465 THR A 39 REMARK 465 PRO A 40 REMARK 465 ALA A 41 REMARK 465 ILE A 42 REMARK 465 PRO A 43 REMARK 465 VAL A 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 75 69.69 65.73 REMARK 500 ALA A 86 -137.94 50.50 REMARK 500 ASN A 105 -166.95 -164.70 REMARK 500 ASN A 123 55.71 -91.50 REMARK 500 ASN A 123 51.95 -91.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP97181 RELATED DB: TARGETTRACK DBREF 6NHS A 28 283 UNP Q8YU74 Q8YU74_NOSS1 28 283 SEQADV 6NHS SER A 25 UNP Q8YU74 EXPRESSION TAG SEQADV 6NHS ASN A 26 UNP Q8YU74 EXPRESSION TAG SEQADV 6NHS ALA A 27 UNP Q8YU74 EXPRESSION TAG SEQRES 1 A 259 SER ASN ALA ARG ASP MSE PRO GLY HIS SER GLN GLU ILE SEQRES 2 A 259 GLN THR PRO ALA ILE PRO VAL ASN VAL ASN LEU GLY ARG SEQRES 3 A 259 SER PHE ASN GLN LEU GLY ILE LYS GLY SER ILE LEU ILE SEQRES 4 A 259 TYR ASP ARG ASN ASN LYS LYS PHE TYR GLU HIS ASN ALA SEQRES 5 A 259 ALA ARG ASN SER GLN SER PHE LEU PRO ALA SER THR PHE SEQRES 6 A 259 LYS ILE PHE ASN SER LEU VAL ALA LEU GLU THR GLY VAL SEQRES 7 A 259 ILE SER ASN ASP VAL ALA ILE LEU THR TRP ASP GLY MSE SEQRES 8 A 259 GLN ARG GLN PHE PRO THR TRP ASN GLN ASP THR ASN ILE SEQRES 9 A 259 ARG GLN ALA PHE ARG ASN SER THR VAL TRP PHE TYR GLN SEQRES 10 A 259 VAL LEU ALA ARG LYS ILE GLY HIS GLU ARG MSE GLU LYS SEQRES 11 A 259 PHE ILE LYS GLN VAL GLY TYR GLY ASN LEU GLN ILE GLY SEQRES 12 A 259 THR PRO GLU GLN ILE ASP ARG PHE TRP LEU GLU GLY PRO SEQRES 13 A 259 LEU GLN ILE THR PRO LYS GLN GLN ILE GLU PHE LEU GLN SEQRES 14 A 259 ARG LEU HIS ARG LYS GLU LEU PRO PHE SER GLN ARG THR SEQRES 15 A 259 LEU ASP LEU VAL GLN ASP ILE MSE ILE TYR GLU ARG THR SEQRES 16 A 259 PRO ASN TYR VAL LEU ARG GLY LYS THR GLY TRP ALA ALA SEQRES 17 A 259 SER VAL THR PRO ASN ILE GLY TRP PHE VAL GLY TYR LEU SEQRES 18 A 259 GLU GLN ASN ASN ASN VAL TYR PHE PHE ALA THR ASN ILE SEQRES 19 A 259 ASP ILE ARG ASN ASN ASP ASP ALA ALA ALA ARG ILE GLU SEQRES 20 A 259 VAL THR ARG ARG SER LEU LYS ALA LEU GLY LEU LEU MODRES 6NHS MSE A 115 MET MODIFIED RESIDUE MODRES 6NHS MSE A 152 MET MODIFIED RESIDUE MODRES 6NHS MSE A 214 MET MODIFIED RESIDUE HET MSE A 115 8 HET MSE A 152 8 HET MSE A 214 8 HET CL A 301 1 HET FMT A 302 3 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET FMT A 306 3 HET EDO A 307 4 HET FMT A 308 3 HET FMT A 309 3 HET FMT A 310 3 HET CL A 311 1 HET CL A 312 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM FMT FORMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 CL 3(CL 1-) FORMUL 3 FMT 5(C H2 O2) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 14 HOH *124(H2 O) HELIX 1 AA1 LEU A 48 LEU A 55 1 8 HELIX 2 AA2 ALA A 77 GLN A 81 5 5 HELIX 3 AA3 PRO A 85 SER A 87 5 3 HELIX 4 AA4 THR A 88 THR A 100 1 13 HELIX 5 AA5 PHE A 119 ASN A 123 5 5 HELIX 6 AA6 ILE A 128 SER A 135 1 8 HELIX 7 AA7 THR A 136 GLY A 148 1 13 HELIX 8 AA8 GLY A 148 GLY A 160 1 13 HELIX 9 AA9 THR A 168 ILE A 172 5 5 HELIX 10 AB1 ARG A 174 GLY A 179 1 6 HELIX 11 AB2 THR A 184 ARG A 197 1 14 HELIX 12 AB3 SER A 203 MSE A 214 1 12 HELIX 13 AB4 ASN A 262 LEU A 280 1 19 SHEET 1 AA1 6 LYS A 70 HIS A 74 0 SHEET 2 AA1 6 GLY A 59 ASP A 65 -1 N ASP A 65 O LYS A 70 SHEET 3 AA1 6 ASN A 250 ILE A 260 -1 O PHE A 253 N TYR A 64 SHEET 4 AA1 6 ASN A 237 GLN A 247 -1 N GLY A 239 O ILE A 258 SHEET 5 AA1 6 TYR A 222 ALA A 231 -1 N VAL A 223 O GLU A 246 SHEET 6 AA1 6 ILE A 215 ARG A 218 -1 N GLU A 217 O LEU A 224 SHEET 1 AA2 2 ILE A 109 LEU A 110 0 SHEET 2 AA2 2 THR A 126 ASN A 127 -1 O THR A 126 N LEU A 110 LINK C GLY A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N GLN A 116 1555 1555 1.33 LINK C ARG A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N GLU A 153 1555 1555 1.33 LINK C ILE A 213 N MSE A 214 1555 1555 1.33 LINK C MSE A 214 N ILE A 215 1555 1555 1.34 CISPEP 1 GLY A 179 PRO A 180 0 8.33 CISPEP 2 THR A 235 PRO A 236 0 -1.13 SITE 1 AC1 3 ASN A 127 ARG A 129 GLN A 130 SITE 1 AC2 5 ILE A 103 SER A 104 ALA A 108 ILE A 109 SITE 2 AC2 5 HOH A 405 SITE 1 AC3 2 ASN A 105 ASP A 125 SITE 1 AC4 6 SER A 135 LYS A 227 THR A 228 GLY A 229 SITE 2 AC4 6 TRP A 230 ARG A 269 SITE 1 AC5 6 GLU A 153 LEU A 164 GLN A 165 ILE A 166 SITE 2 AC5 6 GLY A 167 HOH A 403 SITE 1 AC6 5 SER A 80 SER A 82 LYS A 157 GLN A 158 SITE 2 AC6 5 THR A 184 SITE 1 AC7 2 LYS A 186 GLN A 193 SITE 1 AC8 3 SER A 203 ARG A 205 THR A 206 SITE 1 AC9 2 PHE A 202 GLN A 204 SITE 1 AD1 6 SER A 87 LYS A 90 VAL A 137 TYR A 140 SITE 2 AD1 6 TRP A 176 HOH A 425 CRYST1 116.502 116.502 74.702 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008584 0.004956 0.000000 0.00000 SCALE2 0.000000 0.009911 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013387 0.00000