HEADER HYDROLASE 25-DEC-18 6NI1 TITLE CRYSTAL STRUCTURE OF THE BETA LACTAMASE CLASS A PENP FROM BACILLUS TITLE 2 SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 135461; SOURCE 4 GENE: PENP, S101441_02191; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BETA LACTAMASE CLASS A, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, HYDROLASE, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 3 11-OCT-23 6NI1 1 REMARK REVDAT 2 18-DEC-19 6NI1 1 REMARK REVDAT 1 30-JAN-19 6NI1 0 JRNL AUTH Y.KIM,N.MALTSEVA,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE BETA LACTAMASE CLASS A PENP FROM JRNL TITL 2 BACILLUS SUBTILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 51584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9363 - 4.9624 0.99 2753 157 0.1498 0.1889 REMARK 3 2 4.9624 - 3.9396 1.00 2760 130 0.1348 0.1807 REMARK 3 3 3.9396 - 3.4419 1.00 2746 154 0.1553 0.1656 REMARK 3 4 3.4419 - 3.1273 1.00 2764 127 0.1688 0.1992 REMARK 3 5 3.1273 - 2.9032 1.00 2762 129 0.1773 0.2100 REMARK 3 6 2.9032 - 2.7320 1.00 2731 134 0.1680 0.2078 REMARK 3 7 2.7320 - 2.5952 1.00 2742 137 0.1621 0.2082 REMARK 3 8 2.5952 - 2.4823 1.00 2753 131 0.1513 0.1928 REMARK 3 9 2.4823 - 2.3867 1.00 2738 151 0.1491 0.1932 REMARK 3 10 2.3867 - 2.3044 1.00 2755 103 0.1494 0.1719 REMARK 3 11 2.3044 - 2.2323 1.00 2741 163 0.1496 0.1985 REMARK 3 12 2.2323 - 2.1685 1.00 2728 148 0.1499 0.1818 REMARK 3 13 2.1685 - 2.1114 1.00 2726 145 0.1483 0.1788 REMARK 3 14 2.1114 - 2.0599 1.00 2730 144 0.1543 0.1720 REMARK 3 15 2.0599 - 2.0131 1.00 2750 153 0.1701 0.2171 REMARK 3 16 2.0131 - 1.9702 1.00 2702 153 0.1731 0.2175 REMARK 3 17 1.9702 - 1.9308 1.00 2732 136 0.1871 0.2370 REMARK 3 18 1.9308 - 1.8944 0.90 2466 110 0.1971 0.2342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4275 REMARK 3 ANGLE : 0.926 5774 REMARK 3 CHIRALITY : 0.059 667 REMARK 3 PLANARITY : 0.005 743 REMARK 3 DIHEDRAL : 11.641 2603 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2968 33.0272 -29.2417 REMARK 3 T TENSOR REMARK 3 T11: 0.4670 T22: 0.6207 REMARK 3 T33: 0.3600 T12: -0.0257 REMARK 3 T13: 0.0202 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 3.7654 L22: 4.2884 REMARK 3 L33: 4.0094 L12: -0.0894 REMARK 3 L13: 0.4394 L23: -0.7870 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: -1.1213 S13: -0.4914 REMARK 3 S21: 1.1066 S22: -0.0028 S23: 0.1354 REMARK 3 S31: -0.1999 S32: -0.2728 S33: -0.0219 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5733 29.9789 -54.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.2669 REMARK 3 T33: 0.2371 T12: 0.0068 REMARK 3 T13: -0.0033 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.4649 L22: 1.5167 REMARK 3 L33: 1.5295 L12: 0.2917 REMARK 3 L13: 0.7398 L23: 0.1637 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: 0.2958 S13: -0.1402 REMARK 3 S21: -0.2212 S22: 0.0420 S23: -0.1674 REMARK 3 S31: 0.0178 S32: 0.2606 S33: 0.0200 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0512 36.1548 -44.5522 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.2674 REMARK 3 T33: 0.3076 T12: 0.0248 REMARK 3 T13: -0.0479 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.8286 L22: 0.8392 REMARK 3 L33: 0.8871 L12: 0.4128 REMARK 3 L13: 0.9396 L23: 0.3117 REMARK 3 S TENSOR REMARK 3 S11: -0.1897 S12: -0.0837 S13: 0.4714 REMARK 3 S21: 0.0270 S22: -0.0363 S23: 0.0908 REMARK 3 S31: -0.2042 S32: -0.1730 S33: 0.2213 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 291 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6347 39.1321 -35.5716 REMARK 3 T TENSOR REMARK 3 T11: 0.3203 T22: 0.3808 REMARK 3 T33: 0.3023 T12: 0.0223 REMARK 3 T13: -0.0296 T23: -0.0794 REMARK 3 L TENSOR REMARK 3 L11: 3.5428 L22: 3.5433 REMARK 3 L33: 7.5078 L12: -0.8104 REMARK 3 L13: 1.8320 L23: -1.5408 REMARK 3 S TENSOR REMARK 3 S11: -0.1777 S12: -0.6308 S13: 0.2759 REMARK 3 S21: 0.5631 S22: 0.0000 S23: -0.0651 REMARK 3 S31: -0.3283 S32: 0.2151 S33: 0.1953 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4462 24.8558 -16.6516 REMARK 3 T TENSOR REMARK 3 T11: 0.3584 T22: 0.2809 REMARK 3 T33: 0.2608 T12: -0.0306 REMARK 3 T13: 0.0122 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.9881 L22: 2.4553 REMARK 3 L33: 1.4464 L12: 0.3469 REMARK 3 L13: 0.1502 L23: 0.2716 REMARK 3 S TENSOR REMARK 3 S11: -0.1202 S12: 0.4379 S13: 0.1038 REMARK 3 S21: -0.6644 S22: 0.0725 S23: -0.1055 REMARK 3 S31: -0.2182 S32: 0.0873 S33: 0.0066 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9393 10.0517 14.3506 REMARK 3 T TENSOR REMARK 3 T11: 0.3394 T22: 0.3931 REMARK 3 T33: 0.3003 T12: -0.0400 REMARK 3 T13: -0.0196 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 1.3408 L22: 2.8842 REMARK 3 L33: 2.5575 L12: 0.3709 REMARK 3 L13: 0.0597 L23: 0.0431 REMARK 3 S TENSOR REMARK 3 S11: 0.1177 S12: -0.4389 S13: -0.0908 REMARK 3 S21: 0.5549 S22: -0.0686 S23: 0.0158 REMARK 3 S31: 0.1866 S32: -0.0858 S33: -0.0077 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0223 16.1612 0.0661 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.2323 REMARK 3 T33: 0.2285 T12: 0.0008 REMARK 3 T13: -0.0029 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.1034 L22: 1.0838 REMARK 3 L33: 1.4132 L12: 0.2536 REMARK 3 L13: 0.3995 L23: -0.0974 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: -0.1202 S13: -0.0848 REMARK 3 S21: 0.0379 S22: -0.0402 S23: -0.0839 REMARK 3 S31: 0.0488 S32: -0.1123 S33: -0.0142 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 291 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8331 24.7316 -14.4385 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.2782 REMARK 3 T33: 0.2753 T12: 0.0076 REMARK 3 T13: -0.0402 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.4717 L22: 4.0706 REMARK 3 L33: 5.5473 L12: -0.1804 REMARK 3 L13: -0.0540 L23: 2.0538 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.3035 S13: 0.1660 REMARK 3 S21: -0.5201 S22: -0.0628 S23: 0.2066 REMARK 3 S31: -0.0893 S32: -0.2429 S33: 0.0755 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51645 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 0.96700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 3QHY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM FORMATE 15 %(W/V) REMARK 280 PEG3350, PH 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.90200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.95100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.92650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.97550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 124.87750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 32 REMARK 465 ASN A 33 REMARK 465 ALA A 34 REMARK 465 GLU A 35 REMARK 465 ALA A 36 REMARK 465 LYS A 37 REMARK 465 SER B 32 REMARK 465 ASN B 33 REMARK 465 ALA B 34 REMARK 465 GLU B 35 REMARK 465 ALA B 36 REMARK 465 LYS B 37 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 88 -146.40 50.96 REMARK 500 TYR A 122 76.70 61.23 REMARK 500 LYS A 180 -40.89 -134.51 REMARK 500 ASN A 214 49.47 -86.97 REMARK 500 LEU A 237 -122.71 -112.33 REMARK 500 ARG A 282 -158.34 -117.42 REMARK 500 ALA B 88 -144.66 51.57 REMARK 500 TYR B 122 72.53 58.74 REMARK 500 LYS B 180 -33.99 -134.59 REMARK 500 LEU B 212 -33.10 -134.08 REMARK 500 ASN B 214 52.01 -91.14 REMARK 500 LEU B 237 -122.36 -109.81 REMARK 500 ARG B 282 -158.98 -113.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP07475 RELATED DB: TARGETTRACK DBREF1 6NI1 A 35 306 UNP A0A1Y0WMN3_BACIU DBREF2 6NI1 A A0A1Y0WMN3 35 306 DBREF1 6NI1 B 35 306 UNP A0A1Y0WMN3_BACIU DBREF2 6NI1 B A0A1Y0WMN3 35 306 SEQADV 6NI1 SER A 32 UNP A0A1Y0WMN EXPRESSION TAG SEQADV 6NI1 ASN A 33 UNP A0A1Y0WMN EXPRESSION TAG SEQADV 6NI1 ALA A 34 UNP A0A1Y0WMN EXPRESSION TAG SEQADV 6NI1 ILE A 71 UNP A0A1Y0WMN THR 71 CONFLICT SEQADV 6NI1 PHE A 182 UNP A0A1Y0WMN TYR 182 CONFLICT SEQADV 6NI1 MET A 222 UNP A0A1Y0WMN THR 222 CONFLICT SEQADV 6NI1 SER B 32 UNP A0A1Y0WMN EXPRESSION TAG SEQADV 6NI1 ASN B 33 UNP A0A1Y0WMN EXPRESSION TAG SEQADV 6NI1 ALA B 34 UNP A0A1Y0WMN EXPRESSION TAG SEQADV 6NI1 ILE B 71 UNP A0A1Y0WMN THR 71 CONFLICT SEQADV 6NI1 PHE B 182 UNP A0A1Y0WMN TYR 182 CONFLICT SEQADV 6NI1 MET B 222 UNP A0A1Y0WMN THR 222 CONFLICT SEQRES 1 A 275 SER ASN ALA GLU ALA LYS SER ILE GLU ASP THR ASN MET SEQRES 2 A 275 ALA SER CYS ILE THR ASN LYS LYS PHE VAL GLN LEU GLU SEQRES 3 A 275 LYS LYS PHE ASP ALA ARG LEU GLY VAL TYR ALA ILE ASP SEQRES 4 A 275 ILE GLY SER ASN LYS THR ILE ALA TYR ARG PRO ASN GLU SEQRES 5 A 275 ARG PHE ALA TYR ALA SER THR TYR LYS VAL LEU ALA ALA SEQRES 6 A 275 ALA ALA VAL LEU LYS LYS ASN SER ILE GLU LYS LEU ASN SEQRES 7 A 275 GLU VAL ILE HIS TYR SER LYS ASP ASP LEU VAL THR TYR SEQRES 8 A 275 SER PRO ILE THR GLU LYS HIS LEU ASP THR GLY MET SER SEQRES 9 A 275 LEU LYS GLU ILE SER GLU ALA ALA ILE ARG TYR SER ASP SEQRES 10 A 275 ASN THR ALA GLY ASN ILE LEU LEU GLN GLN LEU GLY GLY SEQRES 11 A 275 PRO LYS GLY PHE GLU LYS SER LEU LYS GLN ILE GLY ASP SEQRES 12 A 275 HIS VAL THR LYS ALA LYS ARG PHE GLU THR ASP LEU ASN SEQRES 13 A 275 SER ALA ILE PRO GLY ASP ILE ARG ASP THR SER THR ALA SEQRES 14 A 275 LYS ALA LEU ALA THR ASP LEU LYS ALA PHE THR LEU ASP SEQRES 15 A 275 ASN THR LEU THR THR ASP LYS ARG MET ILE LEU THR ASP SEQRES 16 A 275 TRP MET ARG GLY ASN ALA THR GLY ASP GLU LEU ILE ARG SEQRES 17 A 275 ALA GLY ALA PRO ILE GLY TRP GLU VAL GLY ASP LYS SER SEQRES 18 A 275 GLY ALA GLY SER TYR GLY THR ARG ASN ASP ILE ALA ILE SEQRES 19 A 275 VAL TRP PRO PRO ASN ARG ALA PRO ILE VAL VAL ALA ILE SEQRES 20 A 275 LEU SER ASN ARG PHE THR LYS ASP ALA ASN TYR ASP ASN SEQRES 21 A 275 ALA LEU ILE ALA GLU ALA ALA LYS VAL VAL LEU ASN ASP SEQRES 22 A 275 LEU LYS SEQRES 1 B 275 SER ASN ALA GLU ALA LYS SER ILE GLU ASP THR ASN MET SEQRES 2 B 275 ALA SER CYS ILE THR ASN LYS LYS PHE VAL GLN LEU GLU SEQRES 3 B 275 LYS LYS PHE ASP ALA ARG LEU GLY VAL TYR ALA ILE ASP SEQRES 4 B 275 ILE GLY SER ASN LYS THR ILE ALA TYR ARG PRO ASN GLU SEQRES 5 B 275 ARG PHE ALA TYR ALA SER THR TYR LYS VAL LEU ALA ALA SEQRES 6 B 275 ALA ALA VAL LEU LYS LYS ASN SER ILE GLU LYS LEU ASN SEQRES 7 B 275 GLU VAL ILE HIS TYR SER LYS ASP ASP LEU VAL THR TYR SEQRES 8 B 275 SER PRO ILE THR GLU LYS HIS LEU ASP THR GLY MET SER SEQRES 9 B 275 LEU LYS GLU ILE SER GLU ALA ALA ILE ARG TYR SER ASP SEQRES 10 B 275 ASN THR ALA GLY ASN ILE LEU LEU GLN GLN LEU GLY GLY SEQRES 11 B 275 PRO LYS GLY PHE GLU LYS SER LEU LYS GLN ILE GLY ASP SEQRES 12 B 275 HIS VAL THR LYS ALA LYS ARG PHE GLU THR ASP LEU ASN SEQRES 13 B 275 SER ALA ILE PRO GLY ASP ILE ARG ASP THR SER THR ALA SEQRES 14 B 275 LYS ALA LEU ALA THR ASP LEU LYS ALA PHE THR LEU ASP SEQRES 15 B 275 ASN THR LEU THR THR ASP LYS ARG MET ILE LEU THR ASP SEQRES 16 B 275 TRP MET ARG GLY ASN ALA THR GLY ASP GLU LEU ILE ARG SEQRES 17 B 275 ALA GLY ALA PRO ILE GLY TRP GLU VAL GLY ASP LYS SER SEQRES 18 B 275 GLY ALA GLY SER TYR GLY THR ARG ASN ASP ILE ALA ILE SEQRES 19 B 275 VAL TRP PRO PRO ASN ARG ALA PRO ILE VAL VAL ALA ILE SEQRES 20 B 275 LEU SER ASN ARG PHE THR LYS ASP ALA ASN TYR ASP ASN SEQRES 21 B 275 ALA LEU ILE ALA GLU ALA ALA LYS VAL VAL LEU ASN ASP SEQRES 22 B 275 LEU LYS HET EDO A 401 4 HET FMT A 402 3 HET FMT A 403 3 HET FMT B 401 3 HET FMT B 402 3 HET FMT B 403 3 HET FMT B 404 3 HET FMT B 405 3 HET FMT B 406 3 HET FMT B 407 3 HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 FMT 9(C H2 O2) FORMUL 13 HOH *319(H2 O) HELIX 1 AA1 SER A 38 ASP A 61 1 24 HELIX 2 AA2 THR A 90 ASN A 103 1 14 HELIX 3 AA3 SER A 104 ASN A 109 1 6 HELIX 4 AA4 SER A 115 LEU A 119 5 5 HELIX 5 AA5 LEU A 136 SER A 147 1 12 HELIX 6 AA6 ASP A 148 LEU A 159 1 12 HELIX 7 AA7 GLY A 160 ILE A 172 1 13 HELIX 8 AA8 THR A 184 SER A 188 5 5 HELIX 9 AA9 ALA A 200 LEU A 212 1 13 HELIX 10 AB1 THR A 217 MET A 228 1 12 HELIX 11 AB2 ASN A 231 ASP A 235 5 5 HELIX 12 AB3 LEU A 237 ALA A 242 5 6 HELIX 13 AB4 ASP A 290 LEU A 305 1 16 HELIX 14 AB5 ILE B 39 ASP B 61 1 23 HELIX 15 AB6 THR B 90 ASN B 103 1 14 HELIX 16 AB7 SER B 104 GLU B 110 1 7 HELIX 17 AB8 SER B 115 LEU B 119 5 5 HELIX 18 AB9 LEU B 136 SER B 147 1 12 HELIX 19 AC1 ASP B 148 LEU B 159 1 12 HELIX 20 AC2 GLY B 160 GLN B 171 1 12 HELIX 21 AC3 THR B 184 SER B 188 5 5 HELIX 22 AC4 THR B 199 LEU B 212 1 14 HELIX 23 AC5 THR B 217 MET B 228 1 12 HELIX 24 AC6 ASN B 231 ASP B 235 5 5 HELIX 25 AC7 LEU B 237 ALA B 242 5 6 HELIX 26 AC8 ASP B 290 LYS B 306 1 17 SHEET 1 AA1 5 THR A 76 TYR A 79 0 SHEET 2 AA1 5 ARG A 63 ASP A 70 -1 N VAL A 66 O TYR A 79 SHEET 3 AA1 5 ILE A 274 ASN A 281 -1 O LEU A 279 N GLY A 65 SHEET 4 AA1 5 ARG A 260 TRP A 267 -1 N VAL A 266 O ILE A 274 SHEET 5 AA1 5 GLU A 247 ALA A 254 -1 N GLU A 247 O TRP A 267 SHEET 1 AA2 2 ARG A 84 ALA A 86 0 SHEET 2 AA2 2 THR A 197 THR A 199 -1 O SER A 198 N PHE A 85 SHEET 1 AA3 2 VAL A 111 ILE A 112 0 SHEET 2 AA3 2 MET A 134 SER A 135 -1 O MET A 134 N ILE A 112 SHEET 1 AA4 5 THR B 76 TYR B 79 0 SHEET 2 AA4 5 ARG B 63 ASP B 70 -1 N VAL B 66 O TYR B 79 SHEET 3 AA4 5 ILE B 274 ASN B 281 -1 O ALA B 277 N TYR B 67 SHEET 4 AA4 5 THR B 259 TRP B 267 -1 N ALA B 264 O VAL B 276 SHEET 5 AA4 5 GLU B 247 GLY B 255 -1 N GLU B 247 O TRP B 267 SHEET 1 AA5 2 PHE B 85 ALA B 86 0 SHEET 2 AA5 2 THR B 197 SER B 198 -1 O SER B 198 N PHE B 85 SHEET 1 AA6 2 VAL B 111 ILE B 112 0 SHEET 2 AA6 2 MET B 134 SER B 135 -1 O MET B 134 N ILE B 112 SSBOND 1 CYS A 47 CYS B 47 1555 1555 2.06 CISPEP 1 GLU A 183 THR A 184 0 1.88 CISPEP 2 GLU B 183 THR B 184 0 -1.28 SITE 1 AC1 7 ALA A 86 ALA A 189 ILE A 190 ASP A 193 SITE 2 AC1 7 THR A 197 FMT A 402 HOH A 522 SITE 1 AC2 6 ARG A 63 ALA A 189 PRO A 191 ASN A 281 SITE 2 AC2 6 EDO A 401 HOH A 524 SITE 1 AC3 6 SER A 46 THR A 49 ASN A 50 PHE A 53 SITE 2 AC3 6 ALA A 78 HOH A 581 SITE 1 AC4 2 ASP B 61 ARG B 282 SITE 1 AC5 1 LYS B 137 SITE 1 AC6 2 ASP A 286 ARG B 229 SITE 1 AC7 3 ASP B 185 THR B 218 ARG B 221 SITE 1 AC8 4 ALA B 189 ILE B 190 ASP B 193 HOH B 514 SITE 1 AC9 1 HOH B 582 SITE 1 AD1 3 VAL A 120 GLU A 127 ASN B 288 CRYST1 87.849 87.849 149.853 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011383 0.006572 0.000000 0.00000 SCALE2 0.000000 0.013144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006673 0.00000