HEADER SIGNALING PROTEIN/IMMUNE SYSTEM 26-DEC-18 6NI2 TITLE STABILIZED BETA-ARRESTIN 1-V2T SUBCOMPLEX OF A GPCR-G PROTEIN-BETA- TITLE 2 ARRESTIN MEGA-COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY 32; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-ARRESTIN-1; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 6-361; COMPND 9 SYNONYM: ARRESTIN BETA-1,ARRESTIN-2; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: FAB30 HEAVY CHAIN; COMPND 13 CHAIN: H; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: FAB30 LIGHT CHAIN; COMPND 17 CHAIN: L; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: VASOPRESSIN V2 RECEPTOR; COMPND 21 CHAIN: V; COMPND 22 SYNONYM: V2R,AVPR V2,ANTIDIURETIC HORMONE RECEPTOR,RENAL-TYPE COMPND 23 ARGININE VASOPRESSIN RECEPTOR; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: LLAMA; SOURCE 4 ORGANISM_TAXID: 9844; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 9 ORGANISM_COMMON: BOVINE; SOURCE 10 ORGANISM_TAXID: 9913; SOURCE 11 GENE: ARRB1; SOURCE 12 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 13 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630; SOURCE 23 MOL_ID: 5; SOURCE 24 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 25 ORGANISM_COMMON: HUMAN; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 GENE: AVPR2, ADHR, DIR, DIR3, V2R; SOURCE 28 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 29 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ARRESTIN, GPCR SIGNALING TRANSDUCER, SCAFFOLDING PROTEIN, SIGNALING KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR A.H.NGUYEN,A.R.B.THOMSEN,T.J.CAHILL,A.DES GEORGES,R.J.LEFKOWITZ REVDAT 4 20-NOV-24 6NI2 1 REMARK REVDAT 3 18-DEC-19 6NI2 1 JRNL REVDAT 2 04-DEC-19 6NI2 1 JRNL REVDAT 1 20-NOV-19 6NI2 0 JRNL AUTH A.H.NGUYEN,A.R.B.THOMSEN,T.J.CAHILL 3RD,R.HUANG,L.Y.HUANG, JRNL AUTH 2 T.MARCINK,O.B.CLARKE,S.HEISSEL,A.MASOUDI,D.BEN-HAIL, JRNL AUTH 3 F.SAMAAN,V.P.DANDEY,Y.Z.TAN,C.HONG,J.P.MAHONEY,S.TRIEST, JRNL AUTH 4 J.LITTLE 4TH,X.CHEN,R.SUNAHARA,J.STEYAERT,H.MOLINA,Z.YU, JRNL AUTH 5 A.DES GEORGES,R.J.LEFKOWITZ JRNL TITL STRUCTURE OF AN ENDOSOMAL SIGNALING GPCR-G JRNL TITL 2 PROTEIN-BETA-ARRESTIN MEGACOMPLEX. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 1123 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31740855 JRNL DOI 10.1038/S41594-019-0330-Y REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.000 REMARK 3 NUMBER OF PARTICLES : 230021 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6NI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238781. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : STABILIZED BETA-ARRESTIN 1-V2T REMARK 245 SUBCOMPLEX OF A GPCR-G PROTEIN- REMARK 245 BETA-ARRESTIN MEGA-COMPLEX; REMARK 245 NANOBODY 32; BETA-ARRESTIN-1; REMARK 245 FAB30; VASOPRESSIN 2 TAIL REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : UNIDENTIFIED REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 10400.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, L, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 GLU A 121 REMARK 465 PRO A 122 REMARK 465 GLU A 123 REMARK 465 ALA A 124 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 465 GLY B 5 REMARK 465 GLY B 309 REMARK 465 ALA B 310 REMARK 465 ASN B 311 REMARK 465 HIS B 362 REMARK 465 ARG B 363 REMARK 465 GLU B 364 REMARK 465 VAL B 365 REMARK 465 PRO B 366 REMARK 465 GLU B 367 REMARK 465 HIS B 368 REMARK 465 GLU B 369 REMARK 465 THR B 370 REMARK 465 PRO B 371 REMARK 465 VAL B 372 REMARK 465 ASP B 373 REMARK 465 THR B 374 REMARK 465 ASN B 375 REMARK 465 LEU B 376 REMARK 465 ILE B 377 REMARK 465 GLU B 378 REMARK 465 LEU B 379 REMARK 465 ASP B 380 REMARK 465 THR B 381 REMARK 465 ASN B 382 REMARK 465 ASP B 383 REMARK 465 ASP B 384 REMARK 465 ASP B 385 REMARK 465 ILE B 386 REMARK 465 VAL B 387 REMARK 465 PHE B 388 REMARK 465 GLU B 389 REMARK 465 ASP B 390 REMARK 465 PHE B 391 REMARK 465 ALA B 392 REMARK 465 ARG B 393 REMARK 465 GLU H 1 REMARK 465 ILE H 2 REMARK 465 SER H 3 REMARK 465 GLU H 4 REMARK 465 SER H 122 REMARK 465 SER H 123 REMARK 465 ALA H 124 REMARK 465 SER H 125 REMARK 465 THR H 126 REMARK 465 LYS H 127 REMARK 465 GLY H 128 REMARK 465 PRO H 129 REMARK 465 SER H 130 REMARK 465 VAL H 131 REMARK 465 PHE H 132 REMARK 465 PRO H 133 REMARK 465 LEU H 134 REMARK 465 ALA H 135 REMARK 465 PRO H 136 REMARK 465 SER H 137 REMARK 465 SER H 138 REMARK 465 LYS H 139 REMARK 465 SER H 140 REMARK 465 THR H 141 REMARK 465 SER H 142 REMARK 465 GLY H 143 REMARK 465 GLY H 144 REMARK 465 THR H 145 REMARK 465 ALA H 146 REMARK 465 ALA H 147 REMARK 465 LEU H 148 REMARK 465 GLY H 149 REMARK 465 CYS H 150 REMARK 465 LEU H 151 REMARK 465 VAL H 152 REMARK 465 LYS H 153 REMARK 465 ASP H 154 REMARK 465 TYR H 155 REMARK 465 PHE H 156 REMARK 465 PRO H 157 REMARK 465 GLU H 158 REMARK 465 PRO H 159 REMARK 465 VAL H 160 REMARK 465 THR H 161 REMARK 465 VAL H 162 REMARK 465 SER H 163 REMARK 465 TRP H 164 REMARK 465 ASN H 165 REMARK 465 SER H 166 REMARK 465 GLY H 167 REMARK 465 ALA H 168 REMARK 465 LEU H 169 REMARK 465 THR H 170 REMARK 465 SER H 171 REMARK 465 GLY H 172 REMARK 465 VAL H 173 REMARK 465 HIS H 174 REMARK 465 THR H 175 REMARK 465 PHE H 176 REMARK 465 PRO H 177 REMARK 465 ALA H 178 REMARK 465 VAL H 179 REMARK 465 LEU H 180 REMARK 465 GLN H 181 REMARK 465 SER H 182 REMARK 465 SER H 183 REMARK 465 GLY H 184 REMARK 465 LEU H 185 REMARK 465 TYR H 186 REMARK 465 SER H 187 REMARK 465 LEU H 188 REMARK 465 SER H 189 REMARK 465 SER H 190 REMARK 465 VAL H 191 REMARK 465 VAL H 192 REMARK 465 THR H 193 REMARK 465 VAL H 194 REMARK 465 PRO H 195 REMARK 465 SER H 196 REMARK 465 SER H 197 REMARK 465 SER H 198 REMARK 465 LEU H 199 REMARK 465 GLY H 200 REMARK 465 THR H 201 REMARK 465 GLN H 202 REMARK 465 THR H 203 REMARK 465 TYR H 204 REMARK 465 ILE H 205 REMARK 465 CYS H 206 REMARK 465 ASN H 207 REMARK 465 VAL H 208 REMARK 465 ASN H 209 REMARK 465 HIS H 210 REMARK 465 LYS H 211 REMARK 465 PRO H 212 REMARK 465 SER H 213 REMARK 465 ASN H 214 REMARK 465 THR H 215 REMARK 465 LYS H 216 REMARK 465 VAL H 217 REMARK 465 ASP H 218 REMARK 465 LYS H 219 REMARK 465 LYS H 220 REMARK 465 VAL H 221 REMARK 465 GLU H 222 REMARK 465 PRO H 223 REMARK 465 LYS H 224 REMARK 465 SER H 225 REMARK 465 CYS H 226 REMARK 465 ASP H 227 REMARK 465 LYS H 228 REMARK 465 THR H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 HIS H 235 REMARK 465 HIS H 236 REMARK 465 HIS H 237 REMARK 465 LYS L 108 REMARK 465 ARG L 109 REMARK 465 THR L 110 REMARK 465 VAL L 111 REMARK 465 ALA L 112 REMARK 465 ALA L 113 REMARK 465 PRO L 114 REMARK 465 SER L 115 REMARK 465 VAL L 116 REMARK 465 PHE L 117 REMARK 465 ILE L 118 REMARK 465 PHE L 119 REMARK 465 PRO L 120 REMARK 465 PRO L 121 REMARK 465 SER L 122 REMARK 465 ASP L 123 REMARK 465 SER L 124 REMARK 465 GLN L 125 REMARK 465 LEU L 126 REMARK 465 LYS L 127 REMARK 465 SER L 128 REMARK 465 GLY L 129 REMARK 465 THR L 130 REMARK 465 ALA L 131 REMARK 465 SER L 132 REMARK 465 VAL L 133 REMARK 465 VAL L 134 REMARK 465 CYS L 135 REMARK 465 LEU L 136 REMARK 465 LEU L 137 REMARK 465 ASN L 138 REMARK 465 ASN L 139 REMARK 465 PHE L 140 REMARK 465 TYR L 141 REMARK 465 PRO L 142 REMARK 465 ARG L 143 REMARK 465 GLU L 144 REMARK 465 ALA L 145 REMARK 465 LYS L 146 REMARK 465 VAL L 147 REMARK 465 GLN L 148 REMARK 465 TRP L 149 REMARK 465 LYS L 150 REMARK 465 VAL L 151 REMARK 465 ASP L 152 REMARK 465 ASN L 153 REMARK 465 ALA L 154 REMARK 465 LEU L 155 REMARK 465 GLN L 156 REMARK 465 SER L 157 REMARK 465 GLY L 158 REMARK 465 ASN L 159 REMARK 465 SER L 160 REMARK 465 GLN L 161 REMARK 465 GLU L 162 REMARK 465 SER L 163 REMARK 465 VAL L 164 REMARK 465 THR L 165 REMARK 465 GLU L 166 REMARK 465 GLN L 167 REMARK 465 ASP L 168 REMARK 465 SER L 169 REMARK 465 LYS L 170 REMARK 465 ASP L 171 REMARK 465 SER L 172 REMARK 465 THR L 173 REMARK 465 TYR L 174 REMARK 465 SER L 175 REMARK 465 LEU L 176 REMARK 465 SER L 177 REMARK 465 SER L 178 REMARK 465 THR L 179 REMARK 465 LEU L 180 REMARK 465 THR L 181 REMARK 465 LEU L 182 REMARK 465 SER L 183 REMARK 465 LYS L 184 REMARK 465 ALA L 185 REMARK 465 ASP L 186 REMARK 465 TYR L 187 REMARK 465 GLU L 188 REMARK 465 LYS L 189 REMARK 465 HIS L 190 REMARK 465 LYS L 191 REMARK 465 VAL L 192 REMARK 465 TYR L 193 REMARK 465 ALA L 194 REMARK 465 CYS L 195 REMARK 465 GLU L 196 REMARK 465 VAL L 197 REMARK 465 THR L 198 REMARK 465 HIS L 199 REMARK 465 GLN L 200 REMARK 465 GLY L 201 REMARK 465 LEU L 202 REMARK 465 SER L 203 REMARK 465 SER L 204 REMARK 465 PRO L 205 REMARK 465 VAL L 206 REMARK 465 THR L 207 REMARK 465 LYS L 208 REMARK 465 SER L 209 REMARK 465 PHE L 210 REMARK 465 ASN L 211 REMARK 465 ARG L 212 REMARK 465 GLY L 213 REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 465 ALA V 343 REMARK 465 ARG V 344 REMARK 465 GLY V 345 REMARK 465 ARG V 346 REMARK 465 THR V 347 REMARK 465 PRO V 348 REMARK 465 PRO V 349 REMARK 465 SER V 350 REMARK 465 LEU V 351 REMARK 465 GLY V 352 REMARK 465 PRO V 353 REMARK 465 GLN V 354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 ARG B 51 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 LEU B 71 CG CD1 CD2 REMARK 470 ARG B 99 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 ASN B 153 CG OD1 ND2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 ARG B 177 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 194 CG OD1 OD2 REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 PHE B 244 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 248 CG CD OE1 NE2 REMARK 470 ARG B 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 ARG B 312 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 313 CG CD OE1 OE2 REMARK 470 LYS B 357 CG CD CE NZ REMARK 470 GLU B 358 CG CD OE1 OE2 REMARK 470 GLU B 359 CG CD OE1 OE2 REMARK 470 GLN L 4 CG CD OE1 NE2 REMARK 470 SER L 15 OG REMARK 470 SER L 66 OG REMARK 470 GLN L 80 CG CD OE1 NE2 REMARK 470 LYS L 104 CG CD CE NZ REMARK 470 ASP V 355 CG OD1 OD2 REMARK 470 GLU V 356 CG CD OE1 OE2 REMARK 470 LYS V 367 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 107 O1P SEP V 363 1.30 REMARK 500 CE LYS B 107 O1P SEP V 363 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 85 CA - CB - CG ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 39 -167.93 -102.63 REMARK 500 HIS A 44 137.61 -38.85 REMARK 500 SER A 50 -164.76 -165.68 REMARK 500 ALA A 51 69.60 66.55 REMARK 500 ASP A 61 5.21 -65.31 REMARK 500 PHE A 98 49.16 -89.37 REMARK 500 LYS B 49 -25.72 -147.17 REMARK 500 ARG B 52 117.64 -163.40 REMARK 500 ASP B 69 42.53 -103.23 REMARK 500 LEU B 243 -76.89 -129.86 REMARK 500 PHE B 244 -64.62 -93.66 REMARK 500 LYS B 294 -77.69 -124.22 REMARK 500 HIS B 295 11.16 -147.97 REMARK 500 ARG B 331 -167.74 -114.68 REMARK 500 GLU B 358 -77.52 -124.60 REMARK 500 SER L 31 -87.48 -67.90 REMARK 500 ALA L 52 -55.37 67.56 REMARK 500 ALA L 85 -162.84 -165.68 REMARK 500 TYR L 92 30.95 -142.74 REMARK 500 GLU V 356 -163.95 -161.41 REMARK 500 ALA V 361 -148.77 -100.86 REMARK 500 SEP V 362 106.51 -165.61 REMARK 500 LEU V 365 115.95 -161.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 51 THR A 52 144.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9375 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-9376 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-9377 RELATED DB: EMDB DBREF 6NI2 A 1 124 PDB 6NI2 6NI2 1 124 DBREF 6NI2 B 1 393 UNP P17870 ARRB1_BOVIN 1 393 DBREF 6NI2 H 1 237 PDB 6NI2 6NI2 1 237 DBREF 6NI2 L 1 215 PDB 6NI2 6NI2 1 215 DBREF 6NI2 V 343 368 UNP P30518 V2R_HUMAN 343 368 SEQRES 1 A 124 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 124 ALA GLY GLY SER LEU ARG LEU SER CYS VAL VAL SER GLY SEQRES 3 A 124 PHE PHE PHE ASP THR VAL THR MET ALA TRP TYR ARG ARG SEQRES 4 A 124 ALA PRO GLY LYS HIS ARG GLU LEU VAL ALA SER ALA THR SEQRES 5 A 124 ALA GLY GLY THR THR THR TYR ALA ASP SER VAL LYS ASP SEQRES 6 A 124 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 A 124 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 A 124 VAL TYR TYR CYS ASN THR PHE VAL ARG SER LEU SER TRP SEQRES 9 A 124 GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS HIS SEQRES 10 A 124 HIS HIS HIS GLU PRO GLU ALA SEQRES 1 B 393 MET GLY ASP LYS GLY THR ARG VAL PHE LYS LYS ALA SER SEQRES 2 B 393 PRO ASN GLY LYS LEU THR VAL TYR LEU GLY LYS ARG ASP SEQRES 3 B 393 PHE VAL ASP HIS ILE ASP LEU VAL GLU PRO VAL ASP GLY SEQRES 4 B 393 VAL VAL LEU VAL ASP PRO GLU TYR LEU LYS GLU ARG ARG SEQRES 5 B 393 VAL TYR VAL THR LEU THR CYS ALA PHE ARG TYR GLY ARG SEQRES 6 B 393 GLU ASP LEU ASP VAL LEU GLY LEU THR PHE ARG LYS ASP SEQRES 7 B 393 LEU PHE VAL ALA ASN VAL GLN SER PHE PRO PRO ALA PRO SEQRES 8 B 393 GLU ASP LYS LYS PRO LEU THR ARG LEU GLN GLU ARG LEU SEQRES 9 B 393 ILE LYS LYS LEU GLY GLU HIS ALA TYR PRO PHE THR PHE SEQRES 10 B 393 GLU ILE PRO PRO ASN LEU PRO CYS SER VAL THR LEU GLN SEQRES 11 B 393 PRO GLY PRO GLU ASP THR GLY LYS ALA CYS GLY VAL ASP SEQRES 12 B 393 TYR GLU VAL LYS ALA PHE CYS ALA GLU ASN LEU GLU GLU SEQRES 13 B 393 LYS ILE HIS LYS ARG ASN SER VAL ARG LEU VAL ILE ARG SEQRES 14 B 393 LYS VAL GLN TYR ALA PRO GLU ARG PRO GLY PRO GLN PRO SEQRES 15 B 393 THR ALA GLU THR THR ARG GLN PHE LEU MET SER ASP LYS SEQRES 16 B 393 PRO LEU HIS LEU GLU ALA SER LEU ASP LYS GLU ILE TYR SEQRES 17 B 393 TYR HIS GLY GLU PRO ILE SER VAL ASN VAL HIS VAL THR SEQRES 18 B 393 ASN ASN THR ASN LYS THR VAL LYS LYS ILE LYS ILE SER SEQRES 19 B 393 VAL ARG GLN TYR ALA ASP ILE CYS LEU PHE ASN THR ALA SEQRES 20 B 393 GLN TYR LYS CYS PRO VAL ALA MET GLU GLU ALA ASP ASP SEQRES 21 B 393 THR VAL ALA PRO SER SER THR PHE CYS LYS VAL TYR THR SEQRES 22 B 393 LEU THR PRO PHE LEU ALA ASN ASN ARG GLU LYS ARG GLY SEQRES 23 B 393 LEU ALA LEU ASP GLY LYS LEU LYS HIS GLU ASP THR ASN SEQRES 24 B 393 LEU ALA SER SER THR LEU LEU ARG GLU GLY ALA ASN ARG SEQRES 25 B 393 GLU ILE LEU GLY ILE ILE VAL SER TYR LYS VAL LYS VAL SEQRES 26 B 393 LYS LEU VAL VAL SER ARG GLY GLY LEU LEU GLY ASP LEU SEQRES 27 B 393 ALA SER SER ASP VAL ALA VAL GLU LEU PRO PHE THR LEU SEQRES 28 B 393 MET HIS PRO LYS PRO LYS GLU GLU PRO PRO HIS ARG GLU SEQRES 29 B 393 VAL PRO GLU HIS GLU THR PRO VAL ASP THR ASN LEU ILE SEQRES 30 B 393 GLU LEU ASP THR ASN ASP ASP ASP ILE VAL PHE GLU ASP SEQRES 31 B 393 PHE ALA ARG SEQRES 1 H 237 GLU ILE SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 H 237 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 H 237 ALA SER GLY PHE ASN VAL TYR SER SER SER ILE HIS TRP SEQRES 4 H 237 VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SEQRES 5 H 237 SER ILE SER SER TYR TYR GLY TYR THR TYR TYR ALA ASP SEQRES 6 H 237 SER VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER SEQRES 7 H 237 LYS ASN THR ALA TYR LEU GLN MET ASN SER LEU ARG ALA SEQRES 8 H 237 GLU ASP THR ALA VAL TYR TYR CYS ALA ARG SER ARG GLN SEQRES 9 H 237 PHE TRP TYR SER GLY LEU ASP TYR TRP GLY GLN GLY THR SEQRES 10 H 237 LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 237 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 237 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 237 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 237 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 237 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 237 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 237 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL SEQRES 18 H 237 GLU PRO LYS SER CYS ASP LYS THR HIS HIS HIS HIS HIS SEQRES 19 H 237 HIS HIS HIS SEQRES 1 L 215 SER ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER SEQRES 2 L 215 ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SEQRES 3 L 215 SER GLN SER VAL SER SER ALA VAL ALA TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SEQRES 5 L 215 SER SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 L 215 SER ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER SEQRES 7 L 215 LEU GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SEQRES 8 L 215 TYR LYS TYR VAL PRO VAL THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP SER GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 V 26 ALA ARG GLY ARG THR PRO PRO SER LEU GLY PRO GLN ASP SEQRES 2 V 26 GLU SEP CYS TPO TPO ALA SEP SEP SEP LEU ALA LYS ASP MODRES 6NI2 SEP V 357 SER MODIFIED RESIDUE MODRES 6NI2 TPO V 359 THR MODIFIED RESIDUE MODRES 6NI2 TPO V 360 THR MODIFIED RESIDUE MODRES 6NI2 SEP V 362 SER MODIFIED RESIDUE MODRES 6NI2 SEP V 363 SER MODIFIED RESIDUE MODRES 6NI2 SEP V 364 SER MODIFIED RESIDUE HET SEP V 357 10 HET TPO V 359 11 HET TPO V 360 11 HET SEP V 362 10 HET SEP V 363 10 HET SEP V 364 10 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 5 SEP 4(C3 H8 N O6 P) FORMUL 5 TPO 2(C4 H10 N O6 P) HELIX 1 AA1 THR B 98 GLY B 109 1 12 HELIX 2 AA2 HIS B 159 ARG B 161 5 3 HELIX 3 AA3 ARG H 90 THR H 94 5 5 SHEET 1 AA1 3 SER A 17 VAL A 23 0 SHEET 2 AA1 3 THR A 77 ASN A 83 -1 O LEU A 80 N LEU A 20 SHEET 3 AA1 3 SER A 70 ARG A 71 -1 N SER A 70 O TYR A 79 SHEET 1 AA2 2 TYR A 37 ARG A 38 0 SHEET 2 AA2 2 GLU A 46 LEU A 47 -1 O GLU A 46 N ARG A 38 SHEET 1 AA3 2 VAL A 92 TYR A 93 0 SHEET 2 AA3 2 THR A 108 GLN A 109 -1 O THR A 108 N TYR A 93 SHEET 1 AA4 5 ALA B 112 PHE B 117 0 SHEET 2 AA4 5 VAL B 37 VAL B 43 -1 N GLY B 39 O PHE B 115 SHEET 3 AA4 5 LEU B 18 LEU B 22 -1 N TYR B 21 O VAL B 40 SHEET 4 AA4 5 ARG B 7 ALA B 12 -1 N LYS B 11 O VAL B 20 SHEET 5 AA4 5 ALA V 361 SEP V 364 -1 O SEP V 363 N VAL B 8 SHEET 1 AA5 5 ASP B 26 VAL B 28 0 SHEET 2 AA5 5 SER B 163 VAL B 171 1 O ARG B 169 N PHE B 27 SHEET 3 AA5 5 GLY B 141 CYS B 150 -1 N VAL B 146 O LEU B 166 SHEET 4 AA5 5 VAL B 53 GLY B 64 -1 N ARG B 62 O GLY B 141 SHEET 5 AA5 5 THR B 74 PHE B 87 -1 O LEU B 79 N CYS B 59 SHEET 1 AA6 5 ASP B 26 VAL B 28 0 SHEET 2 AA6 5 SER B 163 VAL B 171 1 O ARG B 169 N PHE B 27 SHEET 3 AA6 5 GLY B 141 CYS B 150 -1 N VAL B 146 O LEU B 166 SHEET 4 AA6 5 VAL B 127 LEU B 129 -1 N VAL B 127 O VAL B 142 SHEET 5 AA6 5 ALA B 288 ASP B 290 -1 O LEU B 289 N THR B 128 SHEET 1 AA7 4 THR B 183 ARG B 188 0 SHEET 2 AA7 4 LEU B 197 LEU B 203 -1 O LEU B 197 N ARG B 188 SHEET 3 AA7 4 ILE B 214 ASN B 222 -1 O HIS B 219 N GLU B 200 SHEET 4 AA7 4 THR B 267 LEU B 274 -1 O TYR B 272 N VAL B 216 SHEET 1 AA8 5 ILE B 207 TYR B 208 0 SHEET 2 AA8 5 GLU B 346 LEU B 351 1 O THR B 350 N TYR B 208 SHEET 3 AA8 5 GLY B 316 VAL B 329 -1 N TYR B 321 O PHE B 349 SHEET 4 AA8 5 VAL B 228 CYS B 242 -1 N LYS B 232 O LYS B 326 SHEET 5 AA8 5 THR B 246 ALA B 258 -1 O VAL B 253 N VAL B 235 SHEET 1 AA9 4 ILE B 207 TYR B 208 0 SHEET 2 AA9 4 GLU B 346 LEU B 351 1 O THR B 350 N TYR B 208 SHEET 3 AA9 4 GLY B 316 VAL B 329 -1 N TYR B 321 O PHE B 349 SHEET 4 AA9 4 ASP B 342 VAL B 343 -1 O VAL B 343 N LEU B 327 SHEET 1 AB1 4 GLN H 6 SER H 10 0 SHEET 2 AB1 4 LEU H 21 SER H 28 -1 O ALA H 26 N VAL H 8 SHEET 3 AB1 4 THR H 81 MET H 86 -1 O ALA H 82 N CYS H 25 SHEET 4 AB1 4 PHE H 71 ASP H 76 -1 N THR H 72 O GLN H 85 SHEET 1 AB2 6 GLY H 13 LEU H 14 0 SHEET 2 AB2 6 THR H 117 THR H 120 1 O THR H 120 N GLY H 13 SHEET 3 AB2 6 ALA H 95 ARG H 103 -1 N TYR H 97 O THR H 117 SHEET 4 AB2 6 SER H 35 GLN H 42 -1 N HIS H 38 O ALA H 100 SHEET 5 AB2 6 LEU H 48 SER H 55 -1 O ILE H 54 N ILE H 37 SHEET 6 AB2 6 TYR H 60 TYR H 63 -1 O TYR H 62 N SER H 53 SHEET 1 AB3 4 GLY H 13 LEU H 14 0 SHEET 2 AB3 4 THR H 117 THR H 120 1 O THR H 120 N GLY H 13 SHEET 3 AB3 4 ALA H 95 ARG H 103 -1 N TYR H 97 O THR H 117 SHEET 4 AB3 4 LEU H 110 TRP H 113 -1 O TYR H 112 N ARG H 101 SHEET 1 AB4 4 MET L 5 SER L 8 0 SHEET 2 AB4 4 VAL L 20 ALA L 26 -1 O ARG L 25 N THR L 6 SHEET 3 AB4 4 ASP L 71 ILE L 76 -1 O LEU L 74 N ILE L 22 SHEET 4 AB4 4 PHE L 63 SER L 68 -1 N SER L 68 O ASP L 71 SHEET 1 AB5 6 SER L 11 SER L 13 0 SHEET 2 AB5 6 THR L 103 GLU L 106 1 O LYS L 104 N LEU L 12 SHEET 3 AB5 6 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AB5 6 VAL L 34 GLN L 39 -1 N TYR L 37 O TYR L 88 SHEET 5 AB5 6 LYS L 46 TYR L 50 -1 O LYS L 46 N GLN L 38 SHEET 6 AB5 6 SER L 54 LEU L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AB6 4 SER L 11 SER L 13 0 SHEET 2 AB6 4 THR L 103 GLU L 106 1 O LYS L 104 N LEU L 12 SHEET 3 AB6 4 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AB6 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SSBOND 1 CYS H 25 CYS H 99 1555 1555 2.04 SSBOND 2 CYS L 24 CYS L 89 1555 1555 2.05 LINK C GLU V 356 N SEP V 357 1555 1555 1.33 LINK C SEP V 357 N CYS V 358 1555 1555 1.33 LINK C CYS V 358 N TPO V 359 1555 1555 1.33 LINK C TPO V 359 N TPO V 360 1555 1555 1.33 LINK C TPO V 360 N ALA V 361 1555 1555 1.32 LINK C ALA V 361 N SEP V 362 1555 1555 1.33 LINK C SEP V 362 N SEP V 363 1555 1555 1.33 LINK C SEP V 363 N SEP V 364 1555 1555 1.32 LINK C SEP V 364 N LEU V 365 1555 1555 1.33 CISPEP 1 PHE B 87 PRO B 88 0 -5.85 CISPEP 2 PHE H 105 TRP H 106 0 0.14 CISPEP 3 SER L 8 PRO L 9 0 -2.48 CISPEP 4 VAL L 95 PRO L 96 0 0.20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000