HEADER HYDROLASE 27-DEC-18 6NIB TITLE CRYSTAL STRUCTURE OF MEDICAGO TRUNCATULA AGMATINE IMINOHYDROLASE TITLE 2 (DEIMINASE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PORPHYROMONAS-TYPE PEPTIDYL-ARGININE DEIMINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE AGMATINE DEIMINASE; COMPND 5 EC: 3.5.3.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEDICAGO TRUNCATULA; SOURCE 3 ORGANISM_COMMON: BARREL MEDIC; SOURCE 4 ORGANISM_TAXID: 3880; SOURCE 5 TISSUE: LEAVES; SOURCE 6 GENE: 11445422, MTR_4G112810, MTRUNA17_CHR4G0061951; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS POLYAMINE METABOLISM, PUTRESCINE BIOSYNTHESIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.SEKULA,Z.DAUTER REVDAT 4 11-OCT-23 6NIB 1 LINK REVDAT 3 04-DEC-19 6NIB 1 REMARK REVDAT 2 01-MAY-19 6NIB 1 JRNL REVDAT 1 20-MAR-19 6NIB 0 JRNL AUTH B.SEKULA,Z.DAUTER JRNL TITL STRUCTURAL STUDY OF AGMATINE IMINOHYDROLASE FROMMEDICAGO JRNL TITL 2 TRUNCATULA, THE SECOND ENZYME OF THE AGMATINE ROUTE OF JRNL TITL 3 PUTRESCINE BIOSYNTHESIS IN PLANTS. JRNL REF FRONT PLANT SCI V. 10 320 2019 JRNL REFN ESSN 1664-462X JRNL PMID 30984210 JRNL DOI 10.3389/FPLS.2019.00320 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.2 REMARK 3 NUMBER OF REFLECTIONS : 121247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.112 REMARK 3 R VALUE (WORKING SET) : 0.112 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.290 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7096 - 2.6620 0.99 13826 187 0.1110 0.1215 REMARK 3 2 2.6620 - 2.1130 0.99 13715 166 0.1068 0.1285 REMARK 3 3 2.1130 - 1.8459 0.99 13704 182 0.1021 0.1434 REMARK 3 4 1.8459 - 1.6771 1.00 13678 184 0.1015 0.1405 REMARK 3 5 1.6771 - 1.5569 1.00 13672 183 0.1041 0.1366 REMARK 3 6 1.5569 - 1.4651 1.00 13734 143 0.1113 0.1545 REMARK 3 7 1.4651 - 1.3917 1.00 13640 183 0.1276 0.1403 REMARK 3 8 1.3917 - 1.3312 0.83 11334 160 0.1412 0.2019 REMARK 3 9 1.3312 - 1.2799 0.53 7231 92 0.1610 0.1653 REMARK 3 10 1.2799 - 1.2357 0.27 3662 62 0.1798 0.2093 REMARK 3 11 1.2357 - 1.1971 0.11 1483 26 0.1874 0.1780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3028 REMARK 3 ANGLE : 1.397 4145 REMARK 3 CHIRALITY : 0.104 443 REMARK 3 PLANARITY : 0.010 540 REMARK 3 DIHEDRAL : 20.368 1146 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000237979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI (1111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JAN 26, 2018 REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121248 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 3.630 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.12 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 1VKP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE, 20% PEG 3350, REMARK 280 CRYOPROTECTED WITH 25% GLYCEROL, PH 8.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.49800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.75200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.49800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.75200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 132.00323 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.65321 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 GOL A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 8 REMARK 465 ASN A 9 REMARK 465 ALA A 10 REMARK 465 HIS A 11 REMARK 465 GLU A 104 REMARK 465 THR A 105 REMARK 465 SER A 106 REMARK 465 LYS A 107 REMARK 465 SER A 108 REMARK 465 ASP A 109 REMARK 465 ASP A 110 REMARK 465 ALA A 111 REMARK 465 ASP A 130 REMARK 465 GLY A 131 REMARK 465 CYS A 132 REMARK 465 TYR A 133 REMARK 465 GLN A 294 REMARK 465 ASP A 295 REMARK 465 ASP A 296 REMARK 465 GLY A 297 REMARK 465 ALA A 298 REMARK 465 LYS A 299 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 31 -23.03 -158.28 REMARK 500 SER A 90 60.36 -116.87 REMARK 500 ASP A 119 78.28 -101.70 REMARK 500 ARG A 186 -82.20 -105.89 REMARK 500 ASP A 218 58.01 -90.65 REMARK 500 ASN A 363 -159.04 -151.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 73 O REMARK 620 2 ASN A 74 O 84.9 REMARK 620 3 LEU A 76 O 89.6 100.8 REMARK 620 4 HOH A 636 O 86.5 168.9 86.1 REMARK 620 5 HOH A 913 O 168.2 83.8 95.8 104.2 REMARK 620 6 HOH A 926 O 92.8 85.3 173.6 88.1 82.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 125 O REMARK 620 2 ASP A 220 O 89.2 REMARK 620 3 ASN A 222 OD1 85.3 104.6 REMARK 620 4 HOH A 854 O 126.6 143.4 74.9 REMARK 620 5 HOH A 886 O 74.7 138.6 111.5 68.1 REMARK 620 6 HOH A 979 O 119.9 89.1 151.8 79.4 68.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 406 DBREF 6NIB A 11 374 UNP G7JT50 G7JT50_MEDTR 11 374 SEQADV 6NIB SER A 8 UNP G7JT50 EXPRESSION TAG SEQADV 6NIB ASN A 9 UNP G7JT50 EXPRESSION TAG SEQADV 6NIB ALA A 10 UNP G7JT50 EXPRESSION TAG SEQRES 1 A 367 SER ASN ALA HIS GLY PHE HIS MET PRO ALA GLU TRP GLU SEQRES 2 A 367 PRO HIS SER GLN CYS TRP ILE GLY TRP PRO GLU ARG ALA SEQRES 3 A 367 ASP ASN TRP ARG ASP GLY ALA VAL HIS ALA GLN LEU VAL SEQRES 4 A 367 PHE THR ARG VAL ALA ALA ALA ILE SER ARG PHE GLU LYS SEQRES 5 A 367 VAL THR VAL CYS ALA SER SER ALA GLN TRP GLU ASN ALA SEQRES 6 A 367 ARG ASN GLN LEU PRO ASP HIS VAL ARG VAL VAL GLU ILE SEQRES 7 A 367 SER SER ASN ASP SER TRP PHE ARG ASP ILE GLY PRO THR SEQRES 8 A 367 PHE VAL VAL ARG ARG GLU THR SER LYS SER ASP ASP ALA SEQRES 9 A 367 GLU HIS ARG ILE ALA GLY ILE ASP TRP THR PHE ASN SER SEQRES 10 A 367 TRP GLY GLY LEU GLU ASP GLY CYS TYR CYS ASP TRP SER SEQRES 11 A 367 LEU ASP SER LEU VAL LYS LYS LYS ILE LEU ASP VAL GLU SEQRES 12 A 367 ARG ILE PRO ARG PHE SER HIS SER MET VAL LEU GLU GLY SEQRES 13 A 367 GLY SER ILE HIS VAL ASP GLY GLU GLY THR CYS ILE THR SEQRES 14 A 367 THR GLU GLU CYS LEU LEU ASN LYS ASN ARG ASN PRO HIS SEQRES 15 A 367 LEU SER LYS SER GLN ILE GLU ASP GLU LEU LYS ALA TYR SEQRES 16 A 367 LEU GLY VAL ARG LYS VAL ILE TRP LEU PRO ARG GLY LEU SEQRES 17 A 367 TYR GLY ASP ASP ASP THR ASN GLY HIS VAL ASP ASN MET SEQRES 18 A 367 CYS CYS PHE VAL ARG PRO GLY ALA VAL LEU LEU SER TRP SEQRES 19 A 367 THR ASP ASP LYS THR ASP PRO GLN TYR GLU ARG SER GLU SEQRES 20 A 367 GLU ALA TYR SER LEU PHE SER SER VAL THR ASP ALA ASN SEQRES 21 A 367 GLY ARG LYS PHE GLU VAL ILE LYS LEU HIS VAL PRO GLY SEQRES 22 A 367 PRO LEU TYR MET THR GLU LYS GLU ALA ALA GLY VAL PHE SEQRES 23 A 367 GLN ASP ASP GLY ALA LYS PRO ARG LEU PRO GLY THR ARG SEQRES 24 A 367 LEU ALA ALA SER TYR VAL ASN PHE TYR ILE ALA ASN GLY SEQRES 25 A 367 ALA ILE ILE ALA PRO GLN PHE GLY ASP LYS LYS TRP ASP SEQRES 26 A 367 ASP GLU ALA ILE ARG VAL LEU SER LYS THR PHE PRO HIS SEQRES 27 A 367 HIS GLU VAL VAL GLY ILE GLU GLY SER ARG GLU ILE VAL SEQRES 28 A 367 LEU SER GLY GLY ASN ILE HIS CYS ILE THR GLN GLN GLN SEQRES 29 A 367 PRO ALA ILE HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET NA A 404 1 HET NA A 405 1 HET PEG A 406 14 HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 NA 2(NA 1+) FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *585(H2 O) HELIX 1 AA1 TRP A 36 GLY A 39 5 4 HELIX 2 AA2 ALA A 40 ARG A 56 1 17 HELIX 3 AA3 SER A 65 ALA A 67 5 3 HELIX 4 AA4 GLN A 68 LEU A 76 1 9 HELIX 5 AA5 TRP A 91 GLY A 96 1 6 HELIX 6 AA6 TRP A 136 ARG A 151 1 16 HELIX 7 AA7 GLU A 162 GLY A 164 5 3 HELIX 8 AA8 GLU A 178 LEU A 182 1 5 HELIX 9 AA9 SER A 191 GLY A 204 1 14 HELIX 10 AB1 HIS A 224 ASN A 227 5 4 HELIX 11 AB2 PRO A 248 SER A 261 1 14 HELIX 12 AB3 THR A 285 GLY A 291 1 7 HELIX 13 AB4 ASP A 328 PHE A 343 1 16 HELIX 14 AB5 SER A 354 LEU A 359 1 6 HELIX 15 AB6 ASN A 363 ILE A 367 1 5 SHEET 1 AA1 4 ARG A 81 GLU A 84 0 SHEET 2 AA1 4 LYS A 59 ALA A 64 1 N VAL A 62 O ARG A 81 SHEET 3 AA1 4 HIS A 22 ILE A 27 1 N CYS A 25 O THR A 61 SHEET 4 AA1 4 THR A 368 PRO A 372 -1 O GLN A 371 N GLN A 24 SHEET 1 AA2 3 THR A 98 VAL A 101 0 SHEET 2 AA2 3 ILE A 115 THR A 121 -1 O ILE A 118 N THR A 98 SHEET 3 AA2 3 ARG A 154 VAL A 160 1 O PHE A 155 N GLY A 117 SHEET 1 AA3 3 ILE A 166 VAL A 168 0 SHEET 2 AA3 3 THR A 173 THR A 177 -1 O ILE A 175 N HIS A 167 SHEET 3 AA3 3 LYS A 207 LEU A 211 1 O ILE A 209 N CYS A 174 SHEET 1 AA4 3 CYS A 229 ARG A 233 0 SHEET 2 AA4 3 ALA A 236 TRP A 241 -1 O ALA A 236 N VAL A 232 SHEET 3 AA4 3 GLU A 272 HIS A 277 1 O ILE A 274 N VAL A 237 SHEET 1 AA5 3 TYR A 315 ALA A 317 0 SHEET 2 AA5 3 ALA A 320 PRO A 324 -1 O ILE A 322 N TYR A 315 SHEET 3 AA5 3 GLU A 347 ILE A 351 1 O VAL A 349 N ILE A 321 LINK O ARG A 73 NA NA A 405 1555 1555 2.40 LINK O ASN A 74 NA NA A 405 1555 1555 2.57 LINK O LEU A 76 NA NA A 405 1555 1555 2.34 LINK O TRP A 125 NA NA A 404 1555 1555 2.67 LINK O ASP A 220 NA NA A 404 1555 1555 2.65 LINK OD1 ASN A 222 NA NA A 404 1555 1555 2.80 LINK NA NA A 404 O HOH A 854 1555 1555 2.98 LINK NA NA A 404 O HOH A 886 1555 1555 2.91 LINK NA NA A 404 O HOH A 979 1555 1555 2.93 LINK NA NA A 405 O HOH A 636 1555 1555 2.37 LINK NA NA A 405 O HOH A 913 1555 1555 2.34 LINK NA NA A 405 O HOH A 926 1555 1555 2.44 CISPEP 1 GLY A 280 PRO A 281 0 11.24 CISPEP 2 GLY A 280 PRO A 281 0 9.78 SITE 1 AC1 4 ARG A 81 VAL A 149 GLU A 150 HOH A 855 SITE 1 AC2 2 HOH A 745 HOH A 875 SITE 1 AC3 4 TRP A 19 VAL A 232 HOH A 507 HOH A 780 SITE 1 AC4 7 TRP A 125 ASP A 219 ASP A 220 ASN A 222 SITE 2 AC4 7 HOH A 854 HOH A 886 HOH A 979 SITE 1 AC5 6 ARG A 73 ASN A 74 LEU A 76 HOH A 636 SITE 2 AC5 6 HOH A 913 HOH A 926 SITE 1 AC6 12 TRP A 91 ASP A 94 ASP A 220 THR A 221 SITE 2 AC6 12 HIS A 224 GLY A 361 CYS A 366 HOH A 501 SITE 3 AC6 12 HOH A 519 HOH A 542 HOH A 557 HOH A 862 CRYST1 146.996 75.504 47.103 90.00 108.56 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006803 0.000000 0.002284 0.00000 SCALE2 0.000000 0.013244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022395 0.00000