data_6NIZ # _entry.id 6NIZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6NIZ pdb_00006niz 10.2210/pdb6niz/pdb WWPDB D_1000238821 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-01-16 2 'Structure model' 1 1 2019-06-26 3 'Structure model' 1 2 2019-07-31 4 'Structure model' 1 3 2019-11-27 5 'Structure model' 1 4 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Author supporting evidence' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' pdbx_audit_support 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 8 5 'Structure model' pdbx_struct_conn_angle 9 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation.year' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 3 'Structure model' '_citation_author.identifier_ORCID' 8 4 'Structure model' '_pdbx_audit_support.funding_organization' 9 5 'Structure model' '_database_2.pdbx_DOI' 10 5 'Structure model' '_database_2.pdbx_database_accession' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 29 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 30 5 'Structure model' '_pdbx_struct_conn_angle.value' 31 5 'Structure model' '_struct_conn.pdbx_dist_value' 32 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 33 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 34 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 36 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 37 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 38 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 39 5 'Structure model' '_struct_conn.ptnr1_symmetry' 40 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 41 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 42 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 43 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 44 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 45 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 46 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 47 5 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6NIZ _pdbx_database_status.recvd_initial_deposition_date 2019-01-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lieberman, R.L.' 1 0000-0001-9345-3735 'Huard, D.J.E.' 2 0000-0003-0891-4360 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 141 _citation.language ? _citation.page_first 11465 _citation.page_last 11470 _citation.title 'Atomic Structure of a Fluorescent Ag8Cluster Templated by a Multistranded DNA Scaffold.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.8b12203 _citation.pdbx_database_id_PubMed 30562465 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huard, D.J.E.' 1 ? primary 'Demissie, A.' 2 ? primary 'Kim, D.' 3 ? primary 'Lewis, D.' 4 ? primary 'Dickson, R.M.' 5 ? primary 'Petty, J.T.' 6 0000-0003-0149-5335 primary 'Lieberman, R.L.' 7 0000-0001-9345-3735 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*AP*CP*CP*CP*CP)-3') ; 1738.183 2 ? ? ? ? 2 non-polymer syn 'SILVER ION' 107.868 12 ? ? ? ? 3 water nat water 18.015 23 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DA)(DC)(DC)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can AACCCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SILVER ION' AG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DC n 1 4 DC n 1 5 DC n 1 6 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n B 1 1 DA 1 1 1 DA DA B . n B 1 2 DA 2 2 2 DA DA B . n B 1 3 DC 3 3 3 DC DC B . n B 1 4 DC 4 4 4 DC DC B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 DC 6 6 6 DC DC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AG 1 101 7 AG AG A . D 2 AG 1 102 6 AG AG A . E 2 AG 1 103 4 AG AG A . F 2 AG 1 104 11 AG AG A . G 2 AG 1 105 1 AG AG A . H 2 AG 1 106 2 AG AG A . I 2 AG 1 107 10 AG AG A . J 2 AG 1 101 8 AG AG B . K 2 AG 1 102 5 AG AG B . L 2 AG 1 103 3 AG AG B . M 2 AG 1 104 9 AG AG B . N 2 AG 1 105 12 AG AG B . O 3 HOH 1 201 20 HOH HOH A . O 3 HOH 2 202 1 HOH HOH A . O 3 HOH 3 203 29 HOH HOH A . O 3 HOH 4 204 10 HOH HOH A . O 3 HOH 5 205 2 HOH HOH A . O 3 HOH 6 206 6 HOH HOH A . O 3 HOH 7 207 5 HOH HOH A . O 3 HOH 8 208 13 HOH HOH A . O 3 HOH 9 209 17 HOH HOH A . O 3 HOH 10 210 11 HOH HOH A . O 3 HOH 11 211 8 HOH HOH A . O 3 HOH 12 212 9 HOH HOH A . P 3 HOH 1 201 31 HOH HOH B . P 3 HOH 2 202 7 HOH HOH B . P 3 HOH 3 203 15 HOH HOH B . P 3 HOH 4 204 33 HOH HOH B . P 3 HOH 5 205 18 HOH HOH B . P 3 HOH 6 206 14 HOH HOH B . P 3 HOH 7 207 3 HOH HOH B . P 3 HOH 8 208 4 HOH HOH B . P 3 HOH 9 209 32 HOH HOH B . P 3 HOH 10 210 12 HOH HOH B . P 3 HOH 11 211 16 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10.1_2155: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6NIZ _cell.details ? _cell.formula_units_Z ? _cell.length_a 33.290 _cell.length_a_esd ? _cell.length_b 33.290 _cell.length_b_esd ? _cell.length_c 62.010 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6NIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6NIZ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.5 mM DNA, 9 mM silver nitrate, 70 mM sodium cacodylate (pH 6.0)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 295.15 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-06-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.80 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.80 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6NIZ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.93 _reflns.d_resolution_low 23.54 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 24092 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 22.6 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 0.93 _reflns_shell.d_res_low 0.96 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.51 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 12.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6NIZ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.930 _refine.ls_d_res_low 23.540 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 44381 _refine.ls_number_reflns_R_free 3667 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.17 _refine.ls_percent_reflns_R_free 8.26 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.0827 _refine.ls_R_factor_R_free 0.0912 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.0819 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 7.36 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.09 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 230 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 265 _refine_hist.d_res_high 0.930 _refine_hist.d_res_low 23.540 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 256 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.129 ? 388 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 28.066 ? 112 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.069 ? 46 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.018 ? 12 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 0.9299 0.9422 . . 145 1559 99.00 . . . 0.2599 . 0.2628 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.9422 0.9551 . . 145 1557 100.00 . . . 0.2624 . 0.2369 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.9551 0.9687 . . 144 1569 99.00 . . . 0.2274 . 0.2006 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.9687 0.9832 . . 131 1498 94.00 . . . 0.1731 . 0.1552 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.9832 0.9986 . . 130 1391 88.00 . . . 0.1438 . 0.1577 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.9986 1.0149 . . 135 1579 100.00 . . . 0.1101 . 0.0935 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0149 1.0324 . . 145 1591 100.00 . . . 0.0815 . 0.0848 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0324 1.0512 . . 139 1570 100.00 . . . 0.0801 . 0.0819 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0512 1.0714 . . 143 1585 100.00 . . . 0.0827 . 0.0762 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0714 1.0933 . . 141 1539 100.00 . . . 0.0659 . 0.0771 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0933 1.1171 . . 145 1599 100.00 . . . 0.0719 . 0.0698 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1171 1.1430 . . 145 1593 100.00 . . . 0.0681 . 0.0724 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1430 1.1716 . . 140 1540 100.00 . . . 0.0938 . 0.0736 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1716 1.2033 . . 145 1575 100.00 . . . 0.0750 . 0.0772 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2033 1.2387 . . 148 1602 100.00 . . . 0.0690 . 0.0645 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2387 1.2787 . . 138 1593 100.00 . . . 0.0628 . 0.0582 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2787 1.3244 . . 135 1571 100.00 . . . 0.0579 . 0.0585 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3244 1.3774 . . 145 1584 100.00 . . . 0.0545 . 0.0544 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3774 1.4401 . . 143 1572 100.00 . . . 0.0696 . 0.0519 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4401 1.5160 . . 139 1579 100.00 . . . 0.0563 . 0.0539 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5160 1.6110 . . 134 1570 100.00 . . . 0.0588 . 0.0584 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6110 1.7353 . . 137 1595 100.00 . . . 0.0707 . 0.0670 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7353 1.9099 . . 145 1578 100.00 . . . 0.0744 . 0.0773 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9099 2.1861 . . 147 1569 100.00 . . . 0.0943 . 0.0848 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1861 2.7535 . . 145 1582 100.00 . . . 0.0921 . 0.0789 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7535 23.5471 . . 138 1574 99.00 . . . 0.1449 . 0.1139 . . . . . . . . . . # _struct.entry_id 6NIZ _struct.title 'Atomic structure of a fluorescent Ag8 cluster templated by a multistranded DNA scaffold' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6NIZ _struct_keywords.text 'DNA, silver, emissive cluster, nanocluster' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 3 ? P N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6NIZ _struct_ref.pdbx_db_accession 6NIZ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6NIZ A 1 ? 6 ? 6NIZ 1 ? 6 ? 1 6 2 1 6NIZ B 1 ? 6 ? 6NIZ 1 ? 6 ? 1 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2390 ? 1 MORE -63 ? 1 'SSA (A^2)' 1980 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DA 1 N1 ? ? ? 1_555 G AG . AG ? ? A DA 1 A AG 105 1_555 ? ? ? ? ? ? ? 2.135 ? ? metalc2 metalc ? ? A DA 2 N7 ? ? ? 1_555 F AG . AG ? ? A DA 2 A AG 104 1_555 ? ? ? ? ? ? ? 2.200 ? ? metalc3 metalc ? ? A DA 2 N1 ? ? ? 1_555 H AG . AG ? ? A DA 2 A AG 106 1_555 ? ? ? ? ? ? ? 2.148 ? ? metalc4 metalc ? ? A DA 2 N3 ? ? ? 1_555 I AG . AG ? ? A DA 2 A AG 107 1_555 ? ? ? ? ? ? ? 2.294 ? ? metalc5 metalc ? ? A DA 2 N3 ? ? ? 1_555 I AG . AG ? ? A DA 2 A AG 107 8_555 ? ? ? ? ? ? ? 2.271 ? ? metalc6 metalc ? ? A DA 2 N6 ? ? ? 1_555 L AG . AG ? ? A DA 2 B AG 103 1_555 ? ? ? ? ? ? ? 2.095 ? ? metalc7 metalc ? ? A DC 3 N3 ? ? ? 1_555 E AG . AG ? ? A DC 3 A AG 103 1_555 ? ? ? ? ? ? ? 2.136 ? ? metalc8 metalc ? ? A DC 3 N4 ? ? ? 1_555 K AG . AG ? ? A DC 3 B AG 102 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc9 metalc ? ? A DC 4 N3 ? ? ? 1_555 D AG . AG ? ? A DC 4 A AG 102 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc10 metalc ? ? A DC 4 OP1 ? ? ? 1_555 J AG . AG ? ? A DC 4 B AG 101 6_455 ? ? ? ? ? ? ? 2.514 ? ? metalc11 metalc ? ? A DC 5 N3 ? ? ? 1_555 C AG . AG ? ? A DC 5 A AG 101 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc12 metalc ? ? A DC 5 OP1 ? ? ? 1_555 N AG . AG ? ? A DC 5 B AG 105 1_555 ? ? ? ? ? ? ? 2.693 ? ? metalc13 metalc ? ? A DC 6 N3 ? ? ? 1_555 J AG . AG ? ? A DC 6 B AG 101 1_555 ? ? ? ? ? ? ? 2.136 ? ? metalc14 metalc ? ? C AG . AG ? ? ? 1_555 B DC 5 N3 ? ? A AG 101 B DC 5 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc15 metalc ? ? D AG . AG ? ? ? 1_555 B DC 4 N3 ? ? A AG 102 B DC 4 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc16 metalc ? ? E AG . AG ? ? ? 1_555 B DA 2 N6 ? ? A AG 103 B DA 2 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc17 metalc ? ? F AG . AG ? ? ? 1_555 P HOH . O ? ? A AG 104 B HOH 210 1_555 ? ? ? ? ? ? ? 2.570 ? ? metalc18 metalc ? ? G AG . AG ? ? ? 8_555 B DA 1 N6 ? ? A AG 105 B DA 1 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc19 metalc ? ? H AG . AG ? ? ? 8_555 B DA 1 N1 ? ? A AG 106 B DA 1 1_555 ? ? ? ? ? ? ? 2.148 ? ? metalc20 metalc ? ? I AG . AG ? ? ? 1_555 O HOH . O ? ? A AG 107 A HOH 212 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc21 metalc ? ? I AG . AG ? ? ? 1_555 O HOH . O ? ? A AG 107 A HOH 212 8_555 ? ? ? ? ? ? ? 2.353 ? ? metalc22 metalc ? ? B DA 1 N3 ? ? ? 1_555 M AG . AG ? ? B DA 1 B AG 104 1_555 ? ? ? ? ? ? ? 2.535 ? ? metalc23 metalc ? ? B DA 1 N3 ? ? ? 1_555 M AG . AG ? ? B DA 1 B AG 104 8_555 ? ? ? ? ? ? ? 2.335 ? ? metalc24 metalc ? ? B DA 1 N7 ? ? ? 1_555 N AG . AG ? ? B DA 1 B AG 105 1_555 ? ? ? ? ? ? ? 2.239 ? ? metalc25 metalc ? ? B DA 2 N1 ? ? ? 1_555 L AG . AG ? ? B DA 2 B AG 103 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc26 metalc ? ? B DA 2 N7 ? ? ? 1_555 M AG . AG ? ? B DA 2 B AG 104 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc27 metalc ? ? B DA 2 N7 ? ? ? 1_555 M AG . AG ? ? B DA 2 B AG 104 8_555 ? ? ? ? ? ? ? 2.464 ? ? metalc28 metalc ? ? B DC 3 N3 ? ? ? 1_555 K AG . AG ? ? B DC 3 B AG 102 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc29 metalc ? ? B DC 6 N3 ? ? ? 1_555 J AG . AG ? ? B DC 6 B AG 101 1_555 ? ? ? ? ? ? ? 2.144 ? ? hydrog1 hydrog ? ? B DA 2 N1 ? ? ? 1_555 B DA 1 N6 ? ? B DA 2 B DA 1 8_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog2 hydrog ? ? B DA 2 N6 ? ? ? 1_555 B DA 1 N1 ? ? B DA 2 B DA 1 8_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N1 ? A DA 1 ? A DA 1 ? 1_555 AG ? G AG . ? A AG 105 ? 1_555 N6 ? B DA 1 ? B DA 1 ? 1_555 114.7 ? 2 N7 ? A DA 2 ? A DA 2 ? 1_555 AG ? F AG . ? A AG 104 ? 1_555 O ? P HOH . ? B HOH 210 ? 1_555 118.1 ? 3 N1 ? A DA 2 ? A DA 2 ? 1_555 AG ? H AG . ? A AG 106 ? 1_555 N1 ? B DA 1 ? B DA 1 ? 1_555 100.8 ? 4 N3 ? A DA 2 ? A DA 2 ? 1_555 AG ? I AG . ? A AG 107 ? 1_555 N3 ? A DA 2 ? A DA 2 ? 1_555 0.0 ? 5 N3 ? A DA 2 ? A DA 2 ? 1_555 AG ? I AG . ? A AG 107 ? 1_555 O ? O HOH . ? A HOH 212 ? 1_555 118.4 ? 6 N3 ? A DA 2 ? A DA 2 ? 1_555 AG ? I AG . ? A AG 107 ? 1_555 O ? O HOH . ? A HOH 212 ? 1_555 118.4 ? 7 N3 ? A DA 2 ? A DA 2 ? 1_555 AG ? I AG . ? A AG 107 ? 1_555 O ? O HOH . ? A HOH 212 ? 8_555 118.4 ? 8 N3 ? A DA 2 ? A DA 2 ? 1_555 AG ? I AG . ? A AG 107 ? 1_555 O ? O HOH . ? A HOH 212 ? 8_555 118.4 ? 9 O ? O HOH . ? A HOH 212 ? 1_555 AG ? I AG . ? A AG 107 ? 1_555 O ? O HOH . ? A HOH 212 ? 8_555 0.0 ? 10 N6 ? A DA 2 ? A DA 2 ? 1_555 AG ? L AG . ? B AG 103 ? 1_555 N1 ? B DA 2 ? B DA 2 ? 1_555 173.5 ? 11 N3 ? A DC 3 ? A DC 3 ? 1_555 AG ? E AG . ? A AG 103 ? 1_555 N6 ? B DA 2 ? B DA 2 ? 1_555 172.2 ? 12 N4 ? A DC 3 ? A DC 3 ? 1_555 AG ? K AG . ? B AG 102 ? 1_555 N3 ? B DC 3 ? B DC 3 ? 1_555 176.0 ? 13 N3 ? A DC 4 ? A DC 4 ? 1_555 AG ? D AG . ? A AG 102 ? 1_555 N3 ? B DC 4 ? B DC 4 ? 1_555 176.0 ? 14 OP1 ? A DC 4 ? A DC 4 ? 1_555 AG ? J AG . ? B AG 101 ? 6_455 N3 ? A DC 6 ? A DC 6 ? 1_555 9.0 ? 15 OP1 ? A DC 4 ? A DC 4 ? 1_555 AG ? J AG . ? B AG 101 ? 6_455 N3 ? B DC 6 ? B DC 6 ? 1_555 22.4 ? 16 N3 ? A DC 6 ? A DC 6 ? 1_555 AG ? J AG . ? B AG 101 ? 6_455 N3 ? B DC 6 ? B DC 6 ? 1_555 13.7 ? 17 N3 ? A DC 5 ? A DC 5 ? 1_555 AG ? C AG . ? A AG 101 ? 1_555 N3 ? B DC 5 ? B DC 5 ? 1_555 171.0 ? 18 OP1 ? A DC 5 ? A DC 5 ? 1_555 AG ? N AG . ? B AG 105 ? 1_555 N7 ? B DA 1 ? B DA 1 ? 1_555 110.0 ? 19 N3 ? B DA 1 ? B DA 1 ? 1_555 AG ? M AG . ? B AG 104 ? 1_555 N3 ? B DA 1 ? B DA 1 ? 1_555 0.0 ? 20 N3 ? B DA 1 ? B DA 1 ? 1_555 AG ? M AG . ? B AG 104 ? 1_555 N7 ? B DA 2 ? B DA 2 ? 1_555 102.5 ? 21 N3 ? B DA 1 ? B DA 1 ? 1_555 AG ? M AG . ? B AG 104 ? 1_555 N7 ? B DA 2 ? B DA 2 ? 1_555 102.5 ? 22 N3 ? B DA 1 ? B DA 1 ? 1_555 AG ? M AG . ? B AG 104 ? 1_555 N7 ? B DA 2 ? B DA 2 ? 1_555 102.5 ? 23 N3 ? B DA 1 ? B DA 1 ? 1_555 AG ? M AG . ? B AG 104 ? 1_555 N7 ? B DA 2 ? B DA 2 ? 1_555 102.5 ? 24 N7 ? B DA 2 ? B DA 2 ? 1_555 AG ? M AG . ? B AG 104 ? 1_555 N7 ? B DA 2 ? B DA 2 ? 1_555 0.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AG 101 ? 7 'binding site for residue AG A 101' AC2 Software A AG 102 ? 8 'binding site for residue AG A 102' AC3 Software A AG 103 ? 7 'binding site for residue AG A 103' AC4 Software A AG 104 ? 4 'binding site for residue AG A 104' AC5 Software A AG 105 ? 6 'binding site for residue AG A 105' AC6 Software A AG 106 ? 9 'binding site for residue AG A 106' AC7 Software A AG 107 ? 6 'binding site for residue AG A 107' AC8 Software B AG 101 ? 7 'binding site for residue AG B 101' AC9 Software B AG 102 ? 8 'binding site for residue AG B 102' AD1 Software B AG 103 ? 8 'binding site for residue AG B 103' AD2 Software B AG 104 ? 4 'binding site for residue AG B 104' AD3 Software B AG 105 ? 3 'binding site for residue AG B 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DC A 5 ? DC A 5 . ? 1_555 ? 2 AC1 7 DC A 6 ? DC A 6 . ? 1_555 ? 3 AC1 7 AG D . ? AG A 102 . ? 1_555 ? 4 AC1 7 DC B 4 ? DC B 4 . ? 1_555 ? 5 AC1 7 DC B 5 ? DC B 5 . ? 1_555 ? 6 AC1 7 DC B 6 ? DC B 6 . ? 1_555 ? 7 AC1 7 AG J . ? AG B 101 . ? 1_555 ? 8 AC2 8 DC A 3 ? DC A 3 . ? 1_555 ? 9 AC2 8 DC A 4 ? DC A 4 . ? 1_555 ? 10 AC2 8 DC A 5 ? DC A 5 . ? 1_555 ? 11 AC2 8 AG C . ? AG A 101 . ? 1_555 ? 12 AC2 8 DC B 3 ? DC B 3 . ? 1_555 ? 13 AC2 8 DC B 4 ? DC B 4 . ? 1_555 ? 14 AC2 8 DC B 5 ? DC B 5 . ? 1_555 ? 15 AC2 8 AG K . ? AG B 102 . ? 1_555 ? 16 AC3 7 DA A 2 ? DA A 2 . ? 1_555 ? 17 AC3 7 DC A 3 ? DC A 3 . ? 1_555 ? 18 AC3 7 DC A 4 ? DC A 4 . ? 1_555 ? 19 AC3 7 AG H . ? AG A 106 . ? 1_555 ? 20 AC3 7 DA B 2 ? DA B 2 . ? 1_555 ? 21 AC3 7 AG K . ? AG B 102 . ? 1_555 ? 22 AC3 7 AG L . ? AG B 103 . ? 1_555 ? 23 AC4 4 DA A 2 ? DA A 2 . ? 1_555 ? 24 AC4 4 DC A 3 ? DC A 3 . ? 1_555 ? 25 AC4 4 HOH P . ? HOH B 208 . ? 1_555 ? 26 AC4 4 HOH P . ? HOH B 210 . ? 1_555 ? 27 AC5 6 DA A 1 ? DA A 1 . ? 1_555 ? 28 AC5 6 DA A 2 ? DA A 2 . ? 1_555 ? 29 AC5 6 DC A 4 ? DC A 4 . ? 8_555 ? 30 AC5 6 AG H . ? AG A 106 . ? 1_555 ? 31 AC5 6 DA B 1 ? DA B 1 . ? 8_555 ? 32 AC5 6 AG L . ? AG B 103 . ? 1_555 ? 33 AC6 9 DA A 2 ? DA A 2 . ? 1_555 ? 34 AC6 9 DC A 3 ? DC A 3 . ? 8_555 ? 35 AC6 9 AG E . ? AG A 103 . ? 1_555 ? 36 AC6 9 AG G . ? AG A 105 . ? 1_555 ? 37 AC6 9 HOH O . ? HOH A 202 . ? 8_555 ? 38 AC6 9 HOH O . ? HOH A 202 . ? 1_555 ? 39 AC6 9 DA B 1 ? DA B 1 . ? 8_555 ? 40 AC6 9 DA B 2 ? DA B 2 . ? 1_555 ? 41 AC6 9 AG L . ? AG B 103 . ? 1_555 ? 42 AC7 6 DA A 2 ? DA A 2 . ? 8_555 ? 43 AC7 6 DA A 2 ? DA A 2 . ? 1_555 ? 44 AC7 6 DC A 3 ? DC A 3 . ? 8_555 ? 45 AC7 6 DC A 3 ? DC A 3 . ? 1_555 ? 46 AC7 6 HOH O . ? HOH A 212 . ? 8_555 ? 47 AC7 6 HOH O . ? HOH A 212 . ? 1_555 ? 48 AC8 7 DA A 1 ? DA A 1 . ? 3_555 ? 49 AC8 7 DC A 3 ? DC A 3 . ? 6_555 ? 50 AC8 7 DC A 4 ? DC A 4 . ? 6_555 ? 51 AC8 7 DC A 6 ? DC A 6 . ? 1_555 ? 52 AC8 7 AG C . ? AG A 101 . ? 1_555 ? 53 AC8 7 DC B 5 ? DC B 5 . ? 1_555 ? 54 AC8 7 DC B 6 ? DC B 6 . ? 1_555 ? 55 AC9 8 DA A 2 ? DA A 2 . ? 1_555 ? 56 AC9 8 DC A 3 ? DC A 3 . ? 1_555 ? 57 AC9 8 DC A 4 ? DC A 4 . ? 1_555 ? 58 AC9 8 AG D . ? AG A 102 . ? 1_555 ? 59 AC9 8 AG E . ? AG A 103 . ? 1_555 ? 60 AC9 8 DC B 3 ? DC B 3 . ? 1_555 ? 61 AC9 8 DC B 4 ? DC B 4 . ? 1_555 ? 62 AC9 8 AG L . ? AG B 103 . ? 1_555 ? 63 AD1 8 DA A 1 ? DA A 1 . ? 1_555 ? 64 AD1 8 DA A 2 ? DA A 2 . ? 1_555 ? 65 AD1 8 AG E . ? AG A 103 . ? 1_555 ? 66 AD1 8 AG G . ? AG A 105 . ? 1_555 ? 67 AD1 8 AG H . ? AG A 106 . ? 1_555 ? 68 AD1 8 DA B 2 ? DA B 2 . ? 1_555 ? 69 AD1 8 DC B 3 ? DC B 3 . ? 1_555 ? 70 AD1 8 AG K . ? AG B 102 . ? 1_555 ? 71 AD2 4 DA B 1 ? DA B 1 . ? 8_555 ? 72 AD2 4 DA B 1 ? DA B 1 . ? 1_555 ? 73 AD2 4 DA B 2 ? DA B 2 . ? 1_555 ? 74 AD2 4 DA B 2 ? DA B 2 . ? 8_555 ? 75 AD3 3 DC A 4 ? DC A 4 . ? 1_555 ? 76 AD3 3 DC A 5 ? DC A 5 . ? 1_555 ? 77 AD3 3 DA B 1 ? DA B 1 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 H61 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 DA _pdbx_validate_symm_contact.auth_seq_id_1 1 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 AG _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 AG _pdbx_validate_symm_contact.auth_seq_id_2 105 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_555 _pdbx_validate_symm_contact.dist 1.32 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.48 108.30 3.18 0.30 N 2 1 "O5'" A DC 4 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 99.93 105.70 -5.77 0.90 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A AG 107 ? I AG . 2 1 B AG 104 ? M AG . 3 1 A HOH 202 ? O HOH . 4 1 A HOH 212 ? O HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AG AG AG N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 HOH O H1 sing N N 74 HOH O H2 sing N N 75 # _ndb_struct_conf_na.entry_id 6NIZ _ndb_struct_conf_na.feature 'double helix' # _ndb_struct_na_base_pair.model_number 1 _ndb_struct_na_base_pair.i_label_asym_id B _ndb_struct_na_base_pair.i_label_comp_id DA _ndb_struct_na_base_pair.i_label_seq_id 1 _ndb_struct_na_base_pair.i_symmetry 8_555 _ndb_struct_na_base_pair.j_label_asym_id B _ndb_struct_na_base_pair.j_label_comp_id DA _ndb_struct_na_base_pair.j_label_seq_id 2 _ndb_struct_na_base_pair.j_symmetry 8_555 _ndb_struct_na_base_pair.shear 6.819 _ndb_struct_na_base_pair.stretch 0.264 _ndb_struct_na_base_pair.stagger -1.809 _ndb_struct_na_base_pair.buckle 27.887 _ndb_struct_na_base_pair.propeller 3.547 _ndb_struct_na_base_pair.opening 2.843 _ndb_struct_na_base_pair.pair_number 1 _ndb_struct_na_base_pair.pair_name B_DA1:DA2_B _ndb_struct_na_base_pair.i_auth_asym_id B _ndb_struct_na_base_pair.i_auth_seq_id 1 _ndb_struct_na_base_pair.i_PDB_ins_code ? _ndb_struct_na_base_pair.j_auth_asym_id B _ndb_struct_na_base_pair.j_auth_seq_id 2 _ndb_struct_na_base_pair.j_PDB_ins_code ? _ndb_struct_na_base_pair.hbond_type_28 1 _ndb_struct_na_base_pair.hbond_type_12 1 # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1817796 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6NIZ _atom_sites.fract_transf_matrix[1][1] 0.030039 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030039 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016126 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AG C H N O P # loop_