HEADER DNA 02-JAN-19 6NIZ TITLE ATOMIC STRUCTURE OF A FLUORESCENT AG8 CLUSTER TEMPLATED BY A TITLE 2 MULTISTRANDED DNA SCAFFOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*AP*CP*CP*CP*CP)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DNA, SILVER, EMISSIVE CLUSTER, NANOCLUSTER EXPDTA X-RAY DIFFRACTION AUTHOR R.L.LIEBERMAN,D.J.E.HUARD REVDAT 5 13-MAR-24 6NIZ 1 LINK REVDAT 4 27-NOV-19 6NIZ 1 REMARK REVDAT 3 31-JUL-19 6NIZ 1 JRNL REVDAT 2 26-JUN-19 6NIZ 1 JRNL REVDAT 1 16-JAN-19 6NIZ 0 JRNL AUTH D.J.E.HUARD,A.DEMISSIE,D.KIM,D.LEWIS,R.M.DICKSON,J.T.PETTY, JRNL AUTH 2 R.L.LIEBERMAN JRNL TITL ATOMIC STRUCTURE OF A FLUORESCENT AG8CLUSTER TEMPLATED BY A JRNL TITL 2 MULTISTRANDED DNA SCAFFOLD. JRNL REF J.AM.CHEM.SOC. V. 141 11465 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 30562465 JRNL DOI 10.1021/JACS.8B12203 REMARK 2 REMARK 2 RESOLUTION. 0.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 44381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.083 REMARK 3 R VALUE (WORKING SET) : 0.082 REMARK 3 FREE R VALUE : 0.091 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.260 REMARK 3 FREE R VALUE TEST SET COUNT : 3667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.5471 - 2.7535 0.99 1574 138 0.1139 0.1449 REMARK 3 2 2.7535 - 2.1861 1.00 1582 145 0.0789 0.0921 REMARK 3 3 2.1861 - 1.9099 1.00 1569 147 0.0848 0.0943 REMARK 3 4 1.9099 - 1.7353 1.00 1578 145 0.0773 0.0744 REMARK 3 5 1.7353 - 1.6110 1.00 1595 137 0.0670 0.0707 REMARK 3 6 1.6110 - 1.5160 1.00 1570 134 0.0584 0.0588 REMARK 3 7 1.5160 - 1.4401 1.00 1579 139 0.0539 0.0563 REMARK 3 8 1.4401 - 1.3774 1.00 1572 143 0.0519 0.0696 REMARK 3 9 1.3774 - 1.3244 1.00 1584 145 0.0544 0.0545 REMARK 3 10 1.3244 - 1.2787 1.00 1571 135 0.0585 0.0579 REMARK 3 11 1.2787 - 1.2387 1.00 1593 138 0.0582 0.0628 REMARK 3 12 1.2387 - 1.2033 1.00 1602 148 0.0645 0.0690 REMARK 3 13 1.2033 - 1.1716 1.00 1575 145 0.0772 0.0750 REMARK 3 14 1.1716 - 1.1430 1.00 1540 140 0.0736 0.0938 REMARK 3 15 1.1430 - 1.1171 1.00 1593 145 0.0724 0.0681 REMARK 3 16 1.1171 - 1.0933 1.00 1599 145 0.0698 0.0719 REMARK 3 17 1.0933 - 1.0714 1.00 1539 141 0.0771 0.0659 REMARK 3 18 1.0714 - 1.0512 1.00 1585 143 0.0762 0.0827 REMARK 3 19 1.0512 - 1.0324 1.00 1570 139 0.0819 0.0801 REMARK 3 20 1.0324 - 1.0149 1.00 1591 145 0.0848 0.0815 REMARK 3 21 1.0149 - 0.9986 1.00 1579 135 0.0935 0.1101 REMARK 3 22 0.9986 - 0.9832 0.88 1391 130 0.1577 0.1438 REMARK 3 23 0.9832 - 0.9687 0.94 1498 131 0.1552 0.1731 REMARK 3 24 0.9687 - 0.9551 0.99 1569 144 0.2006 0.2274 REMARK 3 25 0.9551 - 0.9422 1.00 1557 145 0.2369 0.2624 REMARK 3 26 0.9422 - 0.9299 0.99 1559 145 0.2628 0.2599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 7.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 256 REMARK 3 ANGLE : 1.129 388 REMARK 3 CHIRALITY : 0.069 46 REMARK 3 PLANARITY : 0.018 12 REMARK 3 DIHEDRAL : 28.066 112 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 295.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.80 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24092 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.930 REMARK 200 RESOLUTION RANGE LOW (A) : 23.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.60 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 MM DNA, 9 MM SILVER NITRATE, 70 MM REMARK 280 SODIUM CACODYLATE (PH 6.0), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.00500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 16.64500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 16.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.50250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 16.64500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 16.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.50750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 16.64500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 16.64500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.50250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 16.64500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 16.64500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.50750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 31.00500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 1980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 AG AG A 107 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 212 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H61 DA B 1 AG AG A 105 8555 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 3 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC A 4 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 105 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 1 N1 REMARK 620 2 DA B 1 N6 114.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 104 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 2 N7 REMARK 620 2 HOH B 210 O 118.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 106 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 2 N1 REMARK 620 2 DA B 1 N1 100.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 107 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 2 N3 REMARK 620 2 DA A 2 N3 0.0 REMARK 620 3 HOH A 212 O 118.4 118.4 REMARK 620 4 HOH A 212 O 118.4 118.4 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 103 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 2 N6 REMARK 620 2 DA B 2 N1 173.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 103 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 3 N3 REMARK 620 2 DA B 2 N6 172.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 102 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 3 N4 REMARK 620 2 DC B 3 N3 176.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 102 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 4 N3 REMARK 620 2 DC B 4 N3 176.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 4 OP1 REMARK 620 2 DC A 6 N3 9.0 REMARK 620 3 DC B 6 N3 22.4 13.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 5 N3 REMARK 620 2 DC B 5 N3 171.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 105 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 5 OP1 REMARK 620 2 DA B 1 N7 110.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 104 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA B 1 N3 REMARK 620 2 DA B 1 N3 0.0 REMARK 620 3 DA B 2 N7 102.5 102.5 REMARK 620 4 DA B 2 N7 102.5 102.5 0.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 105 DBREF 6NIZ A 1 6 PDB 6NIZ 6NIZ 1 6 DBREF 6NIZ B 1 6 PDB 6NIZ 6NIZ 1 6 SEQRES 1 A 6 DA DA DC DC DC DC SEQRES 1 B 6 DA DA DC DC DC DC HET AG A 101 1 HET AG A 102 1 HET AG A 103 1 HET AG A 104 1 HET AG A 105 1 HET AG A 106 1 HET AG A 107 1 HET AG B 101 1 HET AG B 102 1 HET AG B 103 1 HET AG B 104 1 HET AG B 105 1 HETNAM AG SILVER ION FORMUL 3 AG 12(AG 1+) FORMUL 15 HOH *23(H2 O) LINK N1 DA A 1 AG AG A 105 1555 1555 2.14 LINK N7 DA A 2 AG AG A 104 1555 1555 2.20 LINK N1 DA A 2 AG AG A 106 1555 1555 2.15 LINK N3 DA A 2 AG AG A 107 1555 1555 2.29 LINK N3 DA A 2 AG AG A 107 1555 8555 2.27 LINK N6 DA A 2 AG AG B 103 1555 1555 2.10 LINK N3 DC A 3 AG AG A 103 1555 1555 2.14 LINK N4 DC A 3 AG AG B 102 1555 1555 2.10 LINK N3 DC A 4 AG AG A 102 1555 1555 2.12 LINK OP1 DC A 4 AG AG B 101 1555 6455 2.51 LINK N3 DC A 5 AG AG A 101 1555 1555 2.15 LINK OP1 DC A 5 AG AG B 105 1555 1555 2.69 LINK N3 DC A 6 AG AG B 101 1555 1555 2.14 LINK AG AG A 101 N3 DC B 5 1555 1555 2.15 LINK AG AG A 102 N3 DC B 4 1555 1555 2.12 LINK AG AG A 103 N6 DA B 2 1555 1555 2.10 LINK AG AG A 104 O HOH B 210 1555 1555 2.57 LINK AG AG A 105 N6 DA B 1 8555 1555 2.13 LINK AG AG A 106 N1 DA B 1 8555 1555 2.15 LINK AG AG A 107 O HOH A 212 1555 1555 2.35 LINK AG AG A 107 O HOH A 212 1555 8555 2.35 LINK N3 DA B 1 AG AG B 104 1555 1555 2.54 LINK N3 DA B 1 AG AG B 104 1555 8555 2.34 LINK N7 DA B 1 AG AG B 105 1555 1555 2.24 LINK N1 DA B 2 AG AG B 103 1555 1555 2.11 LINK N7 DA B 2 AG AG B 104 1555 1555 2.24 LINK N7 DA B 2 AG AG B 104 1555 8555 2.46 LINK N3 DC B 3 AG AG B 102 1555 1555 2.11 LINK N3 DC B 6 AG AG B 101 1555 1555 2.14 SITE 1 AC1 7 DC A 5 DC A 6 AG A 102 DC B 4 SITE 2 AC1 7 DC B 5 DC B 6 AG B 101 SITE 1 AC2 8 DC A 3 DC A 4 DC A 5 AG A 101 SITE 2 AC2 8 DC B 3 DC B 4 DC B 5 AG B 102 SITE 1 AC3 7 DA A 2 DC A 3 DC A 4 AG A 106 SITE 2 AC3 7 DA B 2 AG B 102 AG B 103 SITE 1 AC4 4 DA A 2 DC A 3 HOH B 208 HOH B 210 SITE 1 AC5 6 DA A 1 DA A 2 DC A 4 AG A 106 SITE 2 AC5 6 DA B 1 AG B 103 SITE 1 AC6 8 DA A 2 DC A 3 AG A 103 AG A 105 SITE 2 AC6 8 HOH A 202 DA B 1 DA B 2 AG B 103 SITE 1 AC7 3 DA A 2 DC A 3 HOH A 212 SITE 1 AC8 7 DA A 1 DC A 3 DC A 4 DC A 6 SITE 2 AC8 7 AG A 101 DC B 5 DC B 6 SITE 1 AC9 8 DA A 2 DC A 3 DC A 4 AG A 102 SITE 2 AC9 8 AG A 103 DC B 3 DC B 4 AG B 103 SITE 1 AD1 8 DA A 1 DA A 2 AG A 103 AG A 105 SITE 2 AD1 8 AG A 106 DA B 2 DC B 3 AG B 102 SITE 1 AD2 2 DA B 1 DA B 2 SITE 1 AD3 3 DC A 4 DC A 5 DA B 1 CRYST1 33.290 33.290 62.010 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030039 0.000000 0.000000 0.00000 SCALE2 0.000000 0.030039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016126 0.00000