HEADER OXIDOREDUCTASE 07-JAN-19 6NKI TITLE STRUCTURE OF PHQB REDUCTASE DOMAIN FROM PENICILLIUM FELLUTANUM CAVEAT 6NKI RESIDUES SER A 2023 AND GLY A 2036 THAT ARE NEXT TO EACH CAVEAT 2 6NKI OTHER IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: CAVEAT 3 6NKI DISTANCE BETWEEN C AND N IS 20.11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NRPS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SEQUENCE IS UNKNOWN FOR TWENTY RESIDUES AT THE N- COMPND 6 TERMINUS OF THE PHQB REDUCTASE DOMAIN CRYSTAL STRUCTURE DUE TO COMPND 7 DISCONNECTIVITY AND POOR QUALITY OF LOCAL ELECTRON DENSITY, WHICH LED COMPND 8 TO A PLOY-ALA BUILD. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM FELLUTANUM; SOURCE 3 ORGANISM_TAXID: 70095; SOURCE 4 GENE: PHQB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.DAN,S.A.NEWMISTER,J.L.SMITH,D.H.SHERMAN REVDAT 4 13-MAR-24 6NKI 1 REMARK REVDAT 3 04-DEC-19 6NKI 1 REMARK REVDAT 2 06-NOV-19 6NKI 1 JRNL REVDAT 1 09-OCT-19 6NKI 0 JRNL AUTH Q.DAN,S.A.NEWMISTER,K.R.KLAS,A.E.FRALEY,T.J.MCAFOOS, JRNL AUTH 2 A.D.SOMOZA,J.D.SUNDERHAUS,Y.YE,V.V.SHENDE,F.YU,J.N.SANDERS, JRNL AUTH 3 W.C.BROWN,L.ZHAO,R.S.PATON,K.N.HOUK,J.L.SMITH,D.H.SHERMAN, JRNL AUTH 4 R.M.WILLIAMS JRNL TITL FUNGAL INDOLE ALKALOID BIOGENESIS THROUGH EVOLUTION OF A JRNL TITL 2 BIFUNCTIONAL REDUCTASE/DIELS-ALDERASE. JRNL REF NAT.CHEM. V. 11 972 2019 JRNL REFN ESSN 1755-4349 JRNL PMID 31548667 JRNL DOI 10.1038/S41557-019-0326-6 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.271 REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.325 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8300 - 5.7700 1.00 1287 145 0.2523 0.3280 REMARK 3 2 5.7700 - 4.5800 1.00 1222 136 0.2331 0.2684 REMARK 3 3 4.5800 - 4.0100 1.00 1225 136 0.2123 0.2609 REMARK 3 4 4.0100 - 3.6400 1.00 1193 132 0.2509 0.2885 REMARK 3 5 3.6400 - 3.3800 1.00 1218 135 0.2978 0.3985 REMARK 3 6 3.3800 - 3.1800 1.00 1199 134 0.3226 0.3859 REMARK 3 7 3.1800 - 3.0200 1.00 1173 131 0.3166 0.3779 REMARK 3 8 3.0200 - 2.8900 1.00 1203 132 0.3378 0.4329 REMARK 3 9 2.8900 - 2.7800 1.00 1177 132 0.3607 0.4693 REMARK 3 10 2.7800 - 2.6800 1.00 1196 133 0.4232 0.4418 REMARK 3 11 2.6800 - 2.6000 1.00 1177 130 0.4041 0.3890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 127.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2845 REMARK 3 ANGLE : 1.249 3915 REMARK 3 CHIRALITY : 0.071 449 REMARK 3 PLANARITY : 0.008 487 REMARK 3 DIHEDRAL : 16.760 977 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14760 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 200 MM MGCL2, 100 MM REMARK 280 TRIS PH 7.0, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.81800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.82200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.29800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.81800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.82200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.29800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.81800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.82200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.29800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.81800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.82200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.29800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 124.59600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2122 REMARK 465 GLY A 2123 REMARK 465 THR A 2124 REMARK 465 GLU A 2125 REMARK 465 SER A 2126 REMARK 465 SER A 2127 REMARK 465 LEU A 2128 REMARK 465 ASN A 2129 REMARK 465 SER A 2130 REMARK 465 SER A 2131 REMARK 465 ILE A 2132 REMARK 465 GLY A 2133 REMARK 465 HIS A 2146 REMARK 465 TRP A 2147 REMARK 465 GLY A 2148 REMARK 465 TYR A 2149 REMARK 465 ASP A 2188 REMARK 465 ALA A 2189 REMARK 465 ALA A 2190 REMARK 465 LEU A 2191 REMARK 465 ALA A 2192 REMARK 465 THR A 2193 REMARK 465 THR A 2194 REMARK 465 ASP A 2195 REMARK 465 THR A 2196 REMARK 465 ASP A 2197 REMARK 465 ASN A 2198 REMARK 465 HIS A 2199 REMARK 465 PRO A 2200 REMARK 465 SER A 2201 REMARK 465 MET A 2202 REMARK 465 SER A 2203 REMARK 465 ASN A 2204 REMARK 465 GLY A 2205 REMARK 465 HIS A 2206 REMARK 465 ALA A 2207 REMARK 465 VAL A 2208 REMARK 465 PHE A 2209 REMARK 465 PRO A 2210 REMARK 465 PRO A 2307 REMARK 465 SER A 2308 REMARK 465 SER A 2309 REMARK 465 HIS A 2310 REMARK 465 SER A 2311 REMARK 465 VAL A 2312 REMARK 465 ASN A 2313 REMARK 465 ASP A 2314 REMARK 465 ASN A 2315 REMARK 465 ALA A 2316 REMARK 465 ASN A 2317 REMARK 465 PRO A 2318 REMARK 465 LEU A 2319 REMARK 465 ALA A 2320 REMARK 465 PRO A 2321 REMARK 465 SER A 2322 REMARK 465 ALA A 2323 REMARK 465 ALA A 2428 REMARK 465 ALA A 2429 REMARK 465 SER A 2430 REMARK 465 THR A 2431 REMARK 465 MET A 2432 REMARK 465 LEU A 2433 REMARK 465 PHE A 2434 REMARK 465 LYS A 2435 REMARK 465 ARG A 2436 REMARK 465 ARG A 2437 REMARK 465 ASN A 2438 REMARK 465 LYS A 2439 REMARK 465 VAL A 2440 REMARK 465 ALA A 2441 REMARK 465 LEU A 2442 REMARK 465 GLY A 2443 REMARK 465 ASN A 2444 REMARK 465 GLY A 2445 REMARK 465 LEU A 2446 REMARK 465 ILE A 2447 REMARK 465 ASN A 2448 REMARK 465 SER A 2449 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A2004 CG CD OE1 NE2 REMARK 470 ILE A2005 CG1 CG2 CD1 REMARK 470 ASN A2006 CG OD1 ND2 REMARK 470 ASP A2007 CG OD1 OD2 REMARK 470 LEU A2008 CG CD1 CD2 REMARK 470 PRO A2009 CG CD REMARK 470 VAL A2010 CG1 CG2 REMARK 470 CYS A2011 SG REMARK 470 GLN A2012 CG CD OE1 NE2 REMARK 470 SER A2013 OG REMARK 470 SER A2014 OG REMARK 470 ARG A2015 CG CD NE CZ NH1 NH2 REMARK 470 ARG A2016 CG CD NE CZ NH1 NH2 REMARK 470 THR A2017 OG1 CG2 REMARK 470 ILE A2018 CG1 CG2 CD1 REMARK 470 HIS A2019 CG ND1 CD2 CE1 NE2 REMARK 470 SER A2020 OG REMARK 470 ARG A2021 CG CD NE CZ NH1 NH2 REMARK 470 PRO A2022 CG CD REMARK 470 SER A2023 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 2037 N SER A 2063 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP A 2059 NH2 ARG A 2097 2565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A2022 N - CA - CB ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A2105 120.16 -171.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 2501 DBREF 6NKI A 2004 2449 UNP L0E2U2 L0E2U2_9EURO 2016 2449 SEQRES 1 A 434 GLN ILE ASN ASP LEU PRO VAL CYS GLN SER SER ARG ARG SEQRES 2 A 434 THR ILE HIS SER ARG PRO SER GLY LYS ARG LEU PHE LEU SEQRES 3 A 434 THR GLY ALA THR GLY PHE LEU GLY THR HIS ILE LEU HIS SEQRES 4 A 434 GLN LEU LEU VAL ASP ASN ASP VAL SER ILE VAL TYR VAL SEQRES 5 A 434 LEU ALA ARG ALA PRO CYS PRO ARG LYS GLY LEU ALA ARG SEQRES 6 A 434 ILE ILE GLN ALA ALA ARG LEU ALA ARG TRP TRP ARG ASN SEQRES 7 A 434 ASP TYR ARG ARG LEU ILE GLN VAL TRP PRO GLY ASP LEU SEQRES 8 A 434 SER GLN PRO HIS LEU GLY LEU ALA ASP GLU HIS TRP GLU SEQRES 9 A 434 THR LEU SER GLY THR GLU SER SER LEU ASN SER SER ILE SEQRES 10 A 434 GLY ALA VAL ASP ALA ILE ILE HIS CYS GLY ALA VAL ILE SEQRES 11 A 434 HIS TRP GLY TYR ASP TYR ASP THR LEU GLU ALA ALA ASN SEQRES 12 A 434 VAL ARG SER THR PHE ASP ILE LEU GLN CYS LEU ASN ARG SEQRES 13 A 434 SER PRO THR PRO ILE ALA LEU THR TYR ILE SER ALA LEU SEQRES 14 A 434 ILE PRO GLY ASP ALA ALA LEU ALA THR THR ASP THR ASP SEQRES 15 A 434 ASN HIS PRO SER MET SER ASN GLY HIS ALA VAL PHE PRO SEQRES 16 A 434 PRO ILE GLU LEU THR ASP GLY TYR THR GLN THR LYS PHE SEQRES 17 A 434 ALA SER GLU GLN LEU ILE GLY ALA PHE SER ALA ARG HIS SEQRES 18 A 434 LYS ALA HIS SER LEU THR ILE VAL ARG PRO GLY PHE MET SEQRES 19 A 434 ILE GLY PRO VAL SER ASN ALA VAL ALA ASN GLY ASP ASP SEQRES 20 A 434 LEU LEU TRP ARG VAL VAL THR THR ALA MET THR THR CYS SEQRES 21 A 434 SER TYR ASN SER ASP GLU SER ASP ASN TRP LEU PHE VAL SEQRES 22 A 434 ALA ALA VAL ASP TRP VAL ALA SER LEU ILE ILE HIS GLU SEQRES 23 A 434 THR LEU HIS ALA ARG PRO SER SER HIS SER VAL ASN ASP SEQRES 24 A 434 ASN ALA ASN PRO LEU ALA PRO SER ALA LYS ALA VAL SER SEQRES 25 A 434 ILE GLY ASP GLY LEU ASN MET SER ASP PHE TRP LYS ALA SEQRES 26 A 434 ILE MET LEU GLY LEU GLY ARG ASP LEU ILE PRO SER SER SEQRES 27 A 434 SER GLN ARG TRP MET ASP THR VAL GLU GLN GLN VAL ASN SEQRES 28 A 434 GLU VAL GLY THR SER HIS PRO LEU TRP PRO LEU MET GLY SEQRES 29 A 434 PHE LEU ARG ALA SER GLY GLY CYS LEU GLY VAL ALA PRO SEQRES 30 A 434 THR ASP PRO LEU PRO VAL PRO ILE TYR GLN PRO PRO SER SEQRES 31 A 434 LEU THR ASN MET ILE ARG GLN ALA VAL VAL ARG ASN ALA SEQRES 32 A 434 GLU TYR LEU ALA SER LEU GLU ASP LEU ALA ALA SER THR SEQRES 33 A 434 MET LEU PHE LYS ARG ARG ASN LYS VAL ALA LEU GLY ASN SEQRES 34 A 434 GLY LEU ILE ASN SER HET NDP A2501 74 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 2 NDP C21 H30 N7 O17 P3 HELIX 1 AA1 ASN A 2006 THR A 2017 1 12 HELIX 2 AA2 GLY A 2046 ASP A 2059 1 14 HELIX 3 AA3 CYS A 2073 ALA A 2088 1 16 HELIX 4 AA4 ARG A 2092 ARG A 2097 5 6 HELIX 5 AA5 GLN A 2108 LEU A 2113 5 6 HELIX 6 AA6 ALA A 2114 GLU A 2119 1 6 HELIX 7 AA7 TYR A 2151 SER A 2172 1 22 HELIX 8 AA8 ASP A 2216 HIS A 2236 1 21 HELIX 9 AA9 ASP A 2262 CYS A 2275 1 14 HELIX 10 AB1 VAL A 2291 HIS A 2304 1 14 HELIX 11 AB2 MET A 2334 GLY A 2346 1 13 HELIX 12 AB3 SER A 2353 GLU A 2367 1 15 HELIX 13 AB4 LEU A 2377 GLY A 2385 1 9 HELIX 14 AB5 PRO A 2403 ASP A 2426 1 24 SHEET 1 AA1 7 ILE A2099 PRO A2103 0 SHEET 2 AA1 7 VAL A2062 ALA A2069 1 N VAL A2065 O GLN A2100 SHEET 3 AA1 7 LYS A2037 THR A2042 1 N LYS A2037 O SER A2063 SHEET 4 AA1 7 ALA A2137 HIS A2140 1 O ILE A2139 N PHE A2040 SHEET 5 AA1 7 ALA A2177 ILE A2181 1 O ALA A2177 N ILE A2138 SHEET 6 AA1 7 LEU A2241 ARG A2245 1 O THR A2242 N TYR A2180 SHEET 7 AA1 7 ALA A2325 SER A2327 1 O VAL A2326 N ARG A2245 SHEET 1 AA2 3 PHE A2248 ILE A2250 0 SHEET 2 AA2 3 TRP A2285 ALA A2290 1 O ALA A2289 N ILE A2250 SHEET 3 AA2 3 GLY A2331 ASN A2333 -1 O LEU A2332 N LEU A2286 SHEET 1 AA3 2 SER A2276 ASN A2278 0 SHEET 2 AA3 2 ILE A2350 SER A2352 1 O ILE A2350 N TYR A2277 SITE 1 AC1 15 GLY A2043 THR A2045 GLY A2046 PHE A2047 SITE 2 AC1 15 ARG A2070 ARG A2080 ASP A2105 LEU A2106 SITE 3 AC1 15 CYS A2141 ALA A2143 VAL A2144 ILE A2145 SITE 4 AC1 15 MET A2249 ASN A2259 ASP A2262 CRYST1 81.636 91.644 124.596 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008026 0.00000