HEADER RNA BINDING PROTEIN 07-JAN-19 6NL1 TITLE STRUCTURE OF T. BRUCEI MERS1 PROTEIN IN ITS APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL EDITED MRNA STABILITY FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: MERS1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MERS1, MRNA PROCESSING, NUDIX, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER REVDAT 4 13-MAR-24 6NL1 1 REMARK REVDAT 3 01-JAN-20 6NL1 1 JRNL REVDAT 2 20-NOV-19 6NL1 1 JRNL REVDAT 1 06-NOV-19 6NL1 0 JRNL AUTH M.A.SCHUMACHER,M.HENDERSON,W.ZENG JRNL TITL STRUCTURES OF MERS1, THE 5' PROCESSING ENZYME OF JRNL TITL 2 MITOCHONDRIAL MRNAS INTRYPANOSOMA BRUCEI. JRNL REF RNA V. 26 69 2020 JRNL REFN ESSN 1469-9001 JRNL PMID 31704716 JRNL DOI 10.1261/RNA.072231.119 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9871 - 4.9481 1.00 3492 188 0.2100 0.2368 REMARK 3 2 4.9481 - 3.9280 1.00 3266 190 0.1473 0.1676 REMARK 3 3 3.9280 - 3.4316 1.00 3264 148 0.1693 0.1886 REMARK 3 4 3.4316 - 3.1179 1.00 3205 185 0.1820 0.2028 REMARK 3 5 3.1179 - 2.8944 1.00 3183 177 0.1888 0.2255 REMARK 3 6 2.8944 - 2.7238 1.00 3184 185 0.1935 0.2376 REMARK 3 7 2.7238 - 2.5874 1.00 3186 151 0.2149 0.2378 REMARK 3 8 2.5874 - 2.4748 1.00 3185 162 0.2183 0.2533 REMARK 3 9 2.4748 - 2.3795 1.00 3160 169 0.2235 0.2355 REMARK 3 10 2.3795 - 2.2974 0.99 3127 163 0.2460 0.3021 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 48.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.15140 REMARK 3 B22 (A**2) : 3.15140 REMARK 3 B33 (A**2) : -6.30270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2228 REMARK 3 ANGLE : 1.017 3037 REMARK 3 CHIRALITY : 0.071 320 REMARK 3 PLANARITY : 0.004 386 REMARK 3 DIHEDRAL : 12.715 827 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 61.3837 -15.6503 16.1326 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.1363 REMARK 3 T33: 0.1549 T12: 0.0287 REMARK 3 T13: -0.0161 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.5216 L22: 0.4035 REMARK 3 L33: 0.5173 L12: 0.2462 REMARK 3 L13: 0.2257 L23: -0.0651 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.0460 S13: -0.0921 REMARK 3 S21: 0.0444 S22: -0.0368 S23: 0.0085 REMARK 3 S31: 0.0992 S32: -0.0146 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33970 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.297 REMARK 200 RESOLUTION RANGE LOW (A) : 49.975 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.45000 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34500 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M MAGNESIUM SULPHATE, 0.1 M HEPES, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.40067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.70033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 113.40067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.70033 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.40067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 56.70033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 113.40067 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 56.70033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -262.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 122.16000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 122.16000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 122.16000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 573 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 743 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 PHE A 6 REMARK 465 PHE A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 CYS A 13 REMARK 465 VAL A 14 REMARK 465 ALA A 15 REMARK 465 VAL A 16 REMARK 465 GLY A 17 REMARK 465 ARG A 18 REMARK 465 ARG A 19 REMARK 465 PHE A 20 REMARK 465 ILE A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 ASP A 24 REMARK 465 ASN A 25 REMARK 465 LYS A 26 REMARK 465 SER A 27 REMARK 465 ILE A 28 REMARK 465 ASP A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 ALA A 32 REMARK 465 PHE A 33 REMARK 465 ILE A 34 REMARK 465 SER A 35 REMARK 465 ASP A 36 REMARK 465 ASP A 37 REMARK 465 ASP A 38 REMARK 465 ALA A 39 REMARK 465 LEU A 40 REMARK 465 ARG A 41 REMARK 465 GLY A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 ALA A 45 REMARK 465 SER A 46 REMARK 465 ALA A 47 REMARK 465 LEU A 48 REMARK 465 ASP A 49 REMARK 465 THR A 50 REMARK 465 GLU A 51 REMARK 465 GLY A 52 REMARK 465 HIS A 53 REMARK 465 ALA A 54 REMARK 465 LEU A 55 REMARK 465 PRO A 56 REMARK 465 PHE A 57 REMARK 465 ASP A 58 REMARK 465 VAL A 59 REMARK 465 HIS A 60 REMARK 465 LEU A 61 REMARK 465 GLN A 62 REMARK 465 GLN A 63 REMARK 465 PRO A 64 REMARK 465 HIS A 65 REMARK 465 SER A 66 REMARK 465 SER A 67 REMARK 465 GLY A 68 REMARK 465 ASP A 69 REMARK 465 GLY A 70 REMARK 465 THR A 71 REMARK 465 ALA A 72 REMARK 465 GLY A 73 REMARK 465 ASP A 74 REMARK 465 THR A 75 REMARK 465 SER A 76 REMARK 465 LEU A 94A REMARK 465 LEU A 94B REMARK 465 THR A 94C REMARK 465 ASN A 94D REMARK 465 VAL A 145 REMARK 465 LYS A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 GLY A 149 REMARK 465 SER A 150 REMARK 465 ASP A 151 REMARK 465 ASP A 152 REMARK 465 GLY A 153 REMARK 465 ASP A 154 REMARK 465 GLY A 155 REMARK 465 PRO A 354 REMARK 465 LEU A 355 REMARK 465 ARG A 356 REMARK 465 GLY A 357 REMARK 465 ASP A 358 REMARK 465 ASN A 359 REMARK 465 TYR A 360 REMARK 465 MET A 361 REMARK 465 ALA A 362 REMARK 465 ILE A 363 REMARK 465 ARG A 364 REMARK 465 TYR A 365 REMARK 465 THR A 366 REMARK 465 PRO A 367 REMARK 465 PRO A 368 REMARK 465 PRO A 369 REMARK 465 TYR A 370 REMARK 465 SER A 371 REMARK 465 ASN A 372 REMARK 465 LEU A 373 REMARK 465 GLN A 374 REMARK 465 GLU A 375 REMARK 465 VAL A 376 REMARK 465 VAL A 377 REMARK 465 GLY A 378 REMARK 465 LEU A 379 REMARK 465 GLY A 380 REMARK 465 ASP A 381 REMARK 465 GLY A 382 REMARK 465 SER A 383 REMARK 465 ILE A 384 REMARK 465 THR A 385 REMARK 465 PRO A 386 REMARK 465 SER A 387 REMARK 465 THR A 388 REMARK 465 GLY A 389 REMARK 465 ASN A 390 REMARK 465 GLY A 391 REMARK 465 GLU A 392 REMARK 465 ASP A 393 REMARK 465 ALA A 394 REMARK 465 SER A 395 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 206 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 742 O HOH A 747 1.91 REMARK 500 O HOH A 634 O HOH A 693 1.93 REMARK 500 O HOH A 656 O HOH A 728 1.95 REMARK 500 O HOH A 679 O HOH A 720 1.97 REMARK 500 O HOH A 740 O HOH A 741 2.00 REMARK 500 O HOH A 538 O HOH A 539 2.01 REMARK 500 O HOH A 678 O HOH A 699 2.09 REMARK 500 OE1 GLU A 188 O HOH A 501 2.10 REMARK 500 O HOH A 539 O HOH A 662 2.11 REMARK 500 O HOH A 710 O HOH A 713 2.15 REMARK 500 O HOH A 685 O HOH A 722 2.17 REMARK 500 O HOH A 548 O HOH A 619 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 660 O HOH A 715 12545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 103 -159.64 -147.80 REMARK 500 SER A 112 -80.51 -127.04 REMARK 500 LYS A 239 -103.38 -123.09 REMARK 500 TYR A 244 -3.54 75.53 REMARK 500 TYR A 281 55.89 -112.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 DBREF 6NL1 A 1 395 UNP B6SBM0 B6SBM0_9TRYP 1 395 SEQADV 6NL1 GLY A -2 UNP B6SBM0 EXPRESSION TAG SEQADV 6NL1 SER A -1 UNP B6SBM0 EXPRESSION TAG SEQADV 6NL1 HIS A 0 UNP B6SBM0 EXPRESSION TAG SEQRES 1 A 398 GLY SER HIS MET ARG LYS GLN LEU PHE PHE THR LEU ALA SEQRES 2 A 398 ARG PRO CYS VAL ALA VAL GLY ARG ARG PHE ILE SER GLY SEQRES 3 A 398 ASP ASN LYS SER ILE ASP SER SER ALA PHE ILE SER ASP SEQRES 4 A 398 ASP ASP ALA LEU ARG GLY GLU LEU ALA SER ALA LEU ASP SEQRES 5 A 398 THR GLU GLY HIS ALA LEU PRO PHE ASP VAL HIS LEU GLN SEQRES 6 A 398 GLN PRO HIS SER SER GLY ASP GLY THR ALA GLY ASP THR SEQRES 7 A 398 SER THR ILE GLN LEU GLU LYS LEU SER HIS PRO PRO ALA SEQRES 8 A 398 ARG PHE ASP LEU LEU THR ASN SER PHE VAL TYR LYS TRP SEQRES 9 A 398 GLN THR LYS ALA ALA LEU ALA ARG LYS VAL SER GLY PRO SEQRES 10 A 398 MET ARG GLU TRP ALA ALA GLU LEU LYS TYR ARG THR GLY SEQRES 11 A 398 VAL HIS ILE GLU LEU GLU PRO THR TYR PRO GLU ARG LEU SEQRES 12 A 398 SER GLU ASN ALA VAL LYS GLY SER GLY SER ASP ASP GLY SEQRES 13 A 398 ASP GLY THR GLN TRP GLY ALA TYR GLU THR ALA ASP ASP SEQRES 14 A 398 VAL ASP ILE THR VAL TYR LEU PHE GLY SER GLU ARG GLY SEQRES 15 A 398 ILE PHE ASN CYS HIS LYS LEU MET GLU ALA ALA ILE GLN SEQRES 16 A 398 GLN ASP PRO VAL TYR VAL ARG LEU GLY ILE PHE ARG ARG SEQRES 17 A 398 LEU ALA ASN SER SER GLU VAL GLU TRP LEU MET LEU ARG SEQRES 18 A 398 ARG ILE ASN ARG GLU LEU ARG PRO PRO ASP ILE PRO PRO SEQRES 19 A 398 ILE SER LEU LYS LEU PRO GLY LYS TRP THR LEU LEU TYR SEQRES 20 A 398 GLU ARG TYR LYS GLU ALA ALA ILE ARG THR LEU TRP GLU SEQRES 21 A 398 GLU THR GLY ILE THR VAL ASP ALA SER ASN VAL TYR PRO SEQRES 22 A 398 THR GLY HIS LEU TYR GLN THR VAL PRO GLN TYR TYR TRP SEQRES 23 A 398 ARG VAL PRO VAL ARG TYR PHE VAL ALA GLU VAL PRO SER SEQRES 24 A 398 ASP ILE ARG VAL GLU GLY PRO GLN VAL VAL PRO LEU GLN SEQRES 25 A 398 TYR MET ARG ASN TRP ASP ALA ARG LEU LEU ARG GLN SER SEQRES 26 A 398 PRO ASP PRO ILE ASP ARG ALA TRP ALA GLN LEU ALA ASP SEQRES 27 A 398 PRO ALA THR GLY CYS ALA TRP MET LYS ALA SER MET ILE SEQRES 28 A 398 ASP GLN LEU GLN LYS PRO LEU ARG GLY ASP ASN TYR MET SEQRES 29 A 398 ALA ILE ARG TYR THR PRO PRO PRO TYR SER ASN LEU GLN SEQRES 30 A 398 GLU VAL VAL GLY LEU GLY ASP GLY SER ILE THR PRO SER SEQRES 31 A 398 THR GLY ASN GLY GLU ASP ALA SER HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 HOH *248(H2 O) HELIX 1 AA1 PRO A 87 ASP A 94 5 5 HELIX 2 AA2 ALA A 105 ARG A 109 1 5 HELIX 3 AA3 LYS A 110 SER A 112 5 3 HELIX 4 AA4 ARG A 116 GLY A 127 1 12 HELIX 5 AA5 TYR A 136 GLU A 142 5 7 HELIX 6 AA6 THR A 163 ASP A 166 5 4 HELIX 7 AA7 SER A 176 ILE A 191 1 16 HELIX 8 AA8 ARG A 246 GLY A 260 1 15 HELIX 9 AA9 ASP A 264 VAL A 268 5 5 HELIX 10 AB1 VAL A 278 TYR A 282 5 5 HELIX 11 AB2 VAL A 306 TYR A 310 5 5 HELIX 12 AB3 ASP A 315 ARG A 320 1 6 HELIX 13 AB4 ASP A 324 ALA A 334 1 11 HELIX 14 AB5 LYS A 344 GLN A 352 1 9 SHEET 1 AA1 4 GLU A 81 LEU A 83 0 SHEET 2 AA1 4 PHE A 97 LYS A 104 -1 O VAL A 98 N LEU A 83 SHEET 3 AA1 4 ASP A 168 GLY A 175 -1 O VAL A 171 N TRP A 101 SHEET 4 AA1 4 HIS A 129 PRO A 134 -1 N GLU A 131 O TYR A 172 SHEET 1 AA2 5 ILE A 232 LYS A 235 0 SHEET 2 AA2 5 GLU A 213 ILE A 220 -1 N LEU A 217 O LYS A 235 SHEET 3 AA2 5 TYR A 197 ARG A 204 -1 N ILE A 202 O LEU A 215 SHEET 4 AA2 5 VAL A 287 GLU A 293 1 O PHE A 290 N GLY A 201 SHEET 5 AA2 5 TYR A 269 LEU A 274 -1 N LEU A 274 O VAL A 287 SHEET 1 AA3 3 ILE A 232 LYS A 235 0 SHEET 2 AA3 3 GLU A 213 ILE A 220 -1 N LEU A 217 O LYS A 235 SHEET 3 AA3 3 CYS A 340 MET A 343 -1 O MET A 343 N TRP A 214 SITE 1 AC1 7 ARG A 199 LYS A 235 LEU A 236 TYR A 289 SITE 2 AC1 7 HOH A 519 HOH A 525 HOH A 593 SITE 1 AC2 5 ARG A 116 ALA A 120 LYS A 123 HOH A 552 SITE 2 AC2 5 HOH A 567 SITE 1 AC3 1 ARG A 204 SITE 1 AC4 5 LEU A 215 THR A 338 CYS A 340 TRP A 342 SITE 2 AC4 5 HOH A 603 CRYST1 122.160 122.160 170.101 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008186 0.004726 0.000000 0.00000 SCALE2 0.000000 0.009452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005879 0.00000