HEADER DNA BINDING PROTEIN/DNA 08-JAN-19 6NLD OBSLTE 10-APR-19 6NLD 6OEB TITLE CRYSTAL STRUCTURE OF HMCES SRAP DOMAIN IN COMPLEX WITH 3' OVERHANG DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: EMBRYONIC STEM CELL-SPECIFIC 5-HYDROXYMETHYLCYTOSINE- COMPND 3 BINDING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SRAP DOMAIN (UNP RESIDUES 1-270); COMPND 6 SYNONYM: ES CELL-SPECIFIC 5HMC-BINDING PROTEIN, PUTATIVE PEPTIDASE COMPND 7 SRAPD1, SRAP DOMAIN-CONTAINING PROTEIN 1, HMCES; COMPND 8 EC: 3.4.-.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA (5'-D(*CP*CP*AP*GP*AP*CP*GP*TP*T)-3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*GP*TP*CP*TP*GP*G)-3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HMCES, C3ORF37, DC12, SRAPD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS SRAP DOMAIN, HMCES, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, DNA BINDING PROTEIN, DNA-PROTEIN COMPLEX, DNA- KEYWDS 3 DAMAGE PROTEIN, 3' OVERHANG, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.HALABELIAN,M.RAVICHANDRAN,Y.LI,H.ZENG,C.BOUNTRA,A.M.EDWARDS, AUTHOR 2 C.H.ARROWSMITH,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 10-APR-19 6NLD 1 OBSLTE REVDAT 1 30-JAN-19 6NLD 0 JRNL AUTH L.HALABELIAN,Y.LI,M.RAVICHANDRAN,H.ZENG,C.BOUNTRA, JRNL AUTH 2 A.M.EDWARDS,C.H.ARROWSMITH JRNL TITL CRYSTAL STRUCTURE OF HMCES SRAP DOMAIN IN COMPLEX WITH 3' JRNL TITL 2 OVERHANG DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1315 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1845 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2040 REMARK 3 NUCLEIC ACID ATOMS : 302 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.42000 REMARK 3 B22 (A**2) : 3.49000 REMARK 3 B33 (A**2) : -5.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.769 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2477 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2059 ; 0.002 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3419 ; 1.511 ; 1.581 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4799 ; 1.314 ; 1.696 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 7.635 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;30.713 ;21.864 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 332 ;15.499 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;10.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2580 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 538 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1040 ; 3.593 ; 4.804 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1039 ; 3.573 ; 4.801 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1300 ; 5.046 ; 7.196 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1301 ; 5.045 ; 7.200 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1437 ; 4.018 ; 5.120 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1438 ; 4.017 ; 5.123 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2120 ; 6.001 ; 7.587 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2884 ; 7.668 ;54.106 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2884 ; 7.667 ;54.121 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NLD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26541 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 48.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.04600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 5KO9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2 M AMMONIUM SULFATE, REMARK 280 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 24.25858 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.57550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.51783 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 24.25858 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.57550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 74.51783 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -24.25858 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -25.57550 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -74.51783 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 149 REMARK 465 GLU A 150 REMARK 465 LYS A 151 REMARK 465 SER A 152 REMARK 465 GLY A 153 REMARK 465 SER A 154 REMARK 465 ILE A 155 REMARK 465 GLY A 156 REMARK 465 ALA A 157 REMARK 465 ALA A 158 REMARK 465 ASP A 159 REMARK 465 SER A 160 REMARK 465 ALA A 271 REMARK 465 GLU A 272 REMARK 465 ASN A 273 REMARK 465 LEU A 274 REMARK 465 TYR A 275 REMARK 465 PHE A 276 REMARK 465 GLN A 277 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 24 NE CZ NH1 NH2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ARG A 130 NE CZ NH1 NH2 REMARK 470 ILE A 147 CG1 CG2 CD1 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 ASN A 163 CG OD1 ND2 REMARK 470 TRP A 164 CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 REMARK 470 TRP A 164 CH2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 ARG A 260 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 47 -20.08 87.52 REMARK 500 GLU A 187 64.19 -116.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 101 DBREF 6NLD A 1 270 UNP Q96FZ2 HMCES_HUMAN 1 270 DBREF 6NLD B 1 9 PDB 6NLD 6NLD 1 9 DBREF 6NLD C 1 6 PDB 6NLD 6NLD 1 6 SEQADV 6NLD ALA A 271 UNP Q96FZ2 EXPRESSION TAG SEQADV 6NLD GLU A 272 UNP Q96FZ2 EXPRESSION TAG SEQADV 6NLD ASN A 273 UNP Q96FZ2 EXPRESSION TAG SEQADV 6NLD LEU A 274 UNP Q96FZ2 EXPRESSION TAG SEQADV 6NLD TYR A 275 UNP Q96FZ2 EXPRESSION TAG SEQADV 6NLD PHE A 276 UNP Q96FZ2 EXPRESSION TAG SEQADV 6NLD GLN A 277 UNP Q96FZ2 EXPRESSION TAG SEQRES 1 A 277 MET CYS GLY ARG THR SER CYS HIS LEU PRO ARG ASP VAL SEQRES 2 A 277 LEU THR ARG ALA CYS ALA TYR GLN ASP ARG ARG GLY GLN SEQRES 3 A 277 GLN ARG LEU PRO GLU TRP ARG ASP PRO ASP LYS TYR CYS SEQRES 4 A 277 PRO SER TYR ASN LYS SER PRO GLN SER ASN SER PRO VAL SEQRES 5 A 277 LEU LEU SER ARG LEU HIS PHE GLU LYS ASP ALA ASP SER SEQRES 6 A 277 SER GLU ARG ILE ILE ALA PRO MET ARG TRP GLY LEU VAL SEQRES 7 A 277 PRO SER TRP PHE LYS GLU SER ASP PRO SER LYS LEU GLN SEQRES 8 A 277 PHE ASN THR THR ASN CYS ARG SER ASP THR VAL MET GLU SEQRES 9 A 277 LYS ARG SER PHE LYS VAL PRO LEU GLY LYS GLY ARG ARG SEQRES 10 A 277 CYS VAL VAL LEU ALA ASP GLY PHE TYR GLU TRP GLN ARG SEQRES 11 A 277 CYS GLN GLY THR ASN GLN ARG GLN PRO TYR PHE ILE TYR SEQRES 12 A 277 PHE PRO GLN ILE LYS THR GLU LYS SER GLY SER ILE GLY SEQRES 13 A 277 ALA ALA ASP SER PRO GLU ASN TRP GLU LYS VAL TRP ASP SEQRES 14 A 277 ASN TRP ARG LEU LEU THR MET ALA GLY ILE PHE ASP CYS SEQRES 15 A 277 TRP GLU PRO PRO GLU GLY GLY ASP VAL LEU TYR SER TYR SEQRES 16 A 277 THR ILE ILE THR VAL ASP SER CYS LYS GLY LEU SER ASP SEQRES 17 A 277 ILE HIS HIS ARG MET PRO ALA ILE LEU ASP GLY GLU GLU SEQRES 18 A 277 ALA VAL SER LYS TRP LEU ASP PHE GLY GLU VAL SER THR SEQRES 19 A 277 GLN GLU ALA LEU LYS LEU ILE HIS PRO THR GLU ASN ILE SEQRES 20 A 277 THR PHE HIS ALA VAL SER SER VAL VAL ASN ASN SER ARG SEQRES 21 A 277 ASN ASN THR PRO GLU CYS LEU ALA PRO VAL ALA GLU ASN SEQRES 22 A 277 LEU TYR PHE GLN SEQRES 1 B 9 DC DC DA DG DA DC DG DT DT SEQRES 1 C 6 DG DT DC DT DG DG HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET UNX A 306 1 HET UNX A 307 1 HET UNX A 308 1 HET UNX A 309 1 HET UNX A 310 1 HET UNX A 311 1 HET UNX B 101 1 HET EDO C 101 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 6(C2 H6 O2) FORMUL 9 UNX 7(X) FORMUL 17 HOH *72(H2 O) HELIX 1 AA1 PRO A 10 ALA A 17 1 8 HELIX 2 AA2 ASP A 34 TYR A 38 5 5 HELIX 3 AA3 LEU A 57 PHE A 59 5 3 HELIX 4 AA4 ASP A 86 LEU A 90 5 5 HELIX 5 AA5 THR A 101 GLU A 104 5 4 HELIX 6 AA6 LYS A 105 LYS A 114 1 10 HELIX 7 AA7 GLU A 162 ASN A 170 1 9 HELIX 8 AA8 CYS A 203 SER A 207 5 5 HELIX 9 AA9 GLY A 219 ASP A 228 1 10 HELIX 10 AB1 SER A 233 LYS A 239 1 7 HELIX 11 AB2 SER A 253 ASN A 258 5 6 HELIX 12 AB3 THR A 263 LEU A 267 5 5 SHEET 1 AA1 5 SER A 41 LYS A 44 0 SHEET 2 AA1 5 THR A 5 CYS A 7 -1 N THR A 5 O LYS A 44 SHEET 3 AA1 5 GLY A 124 ARG A 130 -1 O GLY A 124 N SER A 6 SHEET 4 AA1 5 ARG A 137 TYR A 143 -1 O ILE A 142 N PHE A 125 SHEET 5 AA1 5 THR A 248 ALA A 251 -1 O THR A 248 N TYR A 143 SHEET 1 AA2 2 TYR A 20 GLN A 21 0 SHEET 2 AA2 2 GLN A 27 ARG A 28 -1 O ARG A 28 N TYR A 20 SHEET 1 AA3 7 GLU A 31 TRP A 32 0 SHEET 2 AA3 7 ARG A 68 TRP A 75 1 O ILE A 70 N GLU A 31 SHEET 3 AA3 7 ASN A 49 SER A 55 -1 N LEU A 54 O ILE A 69 SHEET 4 AA3 7 ARG A 117 ALA A 122 -1 O VAL A 119 N LEU A 53 SHEET 5 AA3 7 LEU A 174 TRP A 183 -1 O MET A 176 N VAL A 120 SHEET 6 AA3 7 LEU A 192 ASP A 201 -1 O LEU A 192 N TRP A 183 SHEET 7 AA3 7 ARG A 212 PRO A 214 -1 O MET A 213 N VAL A 200 SHEET 1 AA4 3 ARG A 212 PRO A 214 0 SHEET 2 AA4 3 LEU A 192 ASP A 201 -1 N VAL A 200 O MET A 213 SHEET 3 AA4 3 ASN A 96 ARG A 98 1 N CYS A 97 O THR A 199 SHEET 1 AA5 4 ASN A 96 ARG A 98 0 SHEET 2 AA5 4 LEU A 192 ASP A 201 1 O THR A 199 N CYS A 97 SHEET 3 AA5 4 ARG A 68 TRP A 75 1 N ARG A 74 O TYR A 195 SHEET 4 AA5 4 GLU A 31 TRP A 32 1 N GLU A 31 O ILE A 70 SITE 1 AC1 6 LYS A 37 ASN A 49 VAL A 191 LEU A 192 SITE 2 AC1 6 TYR A 193 EDO A 302 SITE 1 AC2 5 ASP A 34 PHE A 59 PRO A 72 TYR A 193 SITE 2 AC2 5 EDO A 301 SITE 1 AC3 6 ALA A 17 LEU A 53 ARG A 68 THR A 175 SITE 2 AC3 6 GLU A 220 HOH A 431 SITE 1 AC4 4 HIS A 8 PRO A 40 SER A 41 ASN A 262 SITE 1 AC5 5 ARG A 16 ASP A 34 PRO A 35 ASP A 36 SITE 2 AC5 5 HOH A 455 SITE 1 AC6 2 ASN A 93 DG C 5 CRYST1 55.728 51.151 149.210 90.00 92.77 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017944 0.000000 0.000868 0.00000 SCALE2 0.000000 0.019550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006710 0.00000