data_6NM8
#
_entry.id 6NM8
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.398
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 6NM8 pdb_00006nm8 10.2210/pdb6nm8/pdb
WWPDB D_1000238893 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2019-02-20
2 'Structure model' 1 1 2019-02-27
3 'Structure model' 1 2 2019-11-27
4 'Structure model' 1 3 2023-10-11
5 'Structure model' 1 4 2024-11-06
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 3 'Structure model' 'Author supporting evidence'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Database references'
6 4 'Structure model' 'Refinement description'
7 5 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 3 'Structure model' pdbx_audit_support
3 4 'Structure model' chem_comp_atom
4 4 'Structure model' chem_comp_bond
5 4 'Structure model' database_2
6 4 'Structure model' pdbx_initial_refinement_model
7 4 'Structure model' struct_ncs_dom_lim
8 5 'Structure model' pdbx_entry_details
9 5 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.journal_volume'
2 2 'Structure model' '_citation.page_first'
3 2 'Structure model' '_citation.page_last'
4 3 'Structure model' '_pdbx_audit_support.funding_organization'
5 4 'Structure model' '_database_2.pdbx_DOI'
6 4 'Structure model' '_database_2.pdbx_database_accession'
7 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id'
8 4 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id'
9 4 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id'
10 4 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id'
11 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id'
12 4 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id'
13 4 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id'
14 4 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 6NM8
_pdbx_database_status.recvd_initial_deposition_date 2019-01-10
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Perry, E.' 1 ?
'Zhao, B.' 2 ?
'Fesik, S.' 3 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Bioorg. Med. Chem. Lett.'
_citation.journal_id_ASTM BMCLE8
_citation.journal_id_CSD 1127
_citation.journal_id_ISSN 1464-3405
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 29
_citation.language ?
_citation.page_first 786
_citation.page_last 790
_citation.title 'Fragment-based screening of programmed death ligand 1 (PD-L1).'
_citation.year 2019
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1016/j.bmcl.2019.01.028
_citation.pdbx_database_id_PubMed 30728114
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Perry, E.' 1 ?
primary 'Mills, J.J.' 2 ?
primary 'Zhao, B.' 3 ?
primary 'Wang, F.' 4 ?
primary 'Sun, Q.' 5 ?
primary 'Christov, P.P.' 6 ?
primary 'Tarr, J.C.' 7 ?
primary 'Rietz, T.A.' 8 ?
primary 'Olejniczak, E.T.' 9 ?
primary 'Lee, T.' 10 ?
primary 'Fesik, S.' 11 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Programmed cell death 1 ligand 1' 14811.928 2 ? V76T ? ?
2 non-polymer syn "N-({2,6-dimethoxy-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)-D-alanine" 435.512 1 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Programmed death ligand 1,B7 homolog 1,B7-H1'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;MAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKTQHSSYRQRARLLKDQLSLGN
AALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYAAALEHHHHHH
;
_entity_poly.pdbx_seq_one_letter_code_can
;MAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKTQHSSYRQRARLLKDQLSLGN
AALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYAAALEHHHHHH
;
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name "N-({2,6-dimethoxy-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)-D-alanine"
_pdbx_entity_nonpoly.comp_id KSD
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET n
1 2 ALA n
1 3 PHE n
1 4 THR n
1 5 VAL n
1 6 THR n
1 7 VAL n
1 8 PRO n
1 9 LYS n
1 10 ASP n
1 11 LEU n
1 12 TYR n
1 13 VAL n
1 14 VAL n
1 15 GLU n
1 16 TYR n
1 17 GLY n
1 18 SER n
1 19 ASN n
1 20 MET n
1 21 THR n
1 22 ILE n
1 23 GLU n
1 24 CYS n
1 25 LYS n
1 26 PHE n
1 27 PRO n
1 28 VAL n
1 29 GLU n
1 30 LYS n
1 31 GLN n
1 32 LEU n
1 33 ASP n
1 34 LEU n
1 35 ALA n
1 36 ALA n
1 37 LEU n
1 38 ILE n
1 39 VAL n
1 40 TYR n
1 41 TRP n
1 42 GLU n
1 43 MET n
1 44 GLU n
1 45 ASP n
1 46 LYS n
1 47 ASN n
1 48 ILE n
1 49 ILE n
1 50 GLN n
1 51 PHE n
1 52 VAL n
1 53 HIS n
1 54 GLY n
1 55 GLU n
1 56 GLU n
1 57 ASP n
1 58 LEU n
1 59 LYS n
1 60 THR n
1 61 GLN n
1 62 HIS n
1 63 SER n
1 64 SER n
1 65 TYR n
1 66 ARG n
1 67 GLN n
1 68 ARG n
1 69 ALA n
1 70 ARG n
1 71 LEU n
1 72 LEU n
1 73 LYS n
1 74 ASP n
1 75 GLN n
1 76 LEU n
1 77 SER n
1 78 LEU n
1 79 GLY n
1 80 ASN n
1 81 ALA n
1 82 ALA n
1 83 LEU n
1 84 GLN n
1 85 ILE n
1 86 THR n
1 87 ASP n
1 88 VAL n
1 89 LYS n
1 90 LEU n
1 91 GLN n
1 92 ASP n
1 93 ALA n
1 94 GLY n
1 95 VAL n
1 96 TYR n
1 97 ARG n
1 98 CYS n
1 99 MET n
1 100 ILE n
1 101 SER n
1 102 TYR n
1 103 GLY n
1 104 GLY n
1 105 ALA n
1 106 ASP n
1 107 TYR n
1 108 LYS n
1 109 ARG n
1 110 ILE n
1 111 THR n
1 112 VAL n
1 113 LYS n
1 114 VAL n
1 115 ASN n
1 116 ALA n
1 117 PRO n
1 118 TYR n
1 119 ALA n
1 120 ALA n
1 121 ALA n
1 122 LEU n
1 123 GLU n
1 124 HIS n
1 125 HIS n
1 126 HIS n
1 127 HIS n
1 128 HIS n
1 129 HIS n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type 'Biological sequence'
_entity_src_gen.pdbx_beg_seq_num 1
_entity_src_gen.pdbx_end_seq_num 129
_entity_src_gen.gene_src_common_name Human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'CD274, B7H1, PDCD1L1, PDCD1LG1, PDL1'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2'
89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1'
175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3'
132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4'
133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S'
121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3'
146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4'
147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2'
75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1'
156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2'
131.173
KSD non-polymer . "N-({2,6-dimethoxy-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)-D-alanine" ? 'C26 H29 N O5'
435.512
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2'
131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1'
147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S'
149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2'
165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2'
115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3'
105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3'
119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2'
204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3'
181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2'
117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MET 1 17 ? ? ? A . n
A 1 2 ALA 2 18 18 ALA ALA A . n
A 1 3 PHE 3 19 19 PHE PHE A . n
A 1 4 THR 4 20 20 THR THR A . n
A 1 5 VAL 5 21 21 VAL VAL A . n
A 1 6 THR 6 22 22 THR THR A . n
A 1 7 VAL 7 23 23 VAL VAL A . n
A 1 8 PRO 8 24 24 PRO PRO A . n
A 1 9 LYS 9 25 25 LYS LYS A . n
A 1 10 ASP 10 26 26 ASP ASP A . n
A 1 11 LEU 11 27 27 LEU LEU A . n
A 1 12 TYR 12 28 28 TYR TYR A . n
A 1 13 VAL 13 29 29 VAL VAL A . n
A 1 14 VAL 14 30 30 VAL VAL A . n
A 1 15 GLU 15 31 31 GLU GLU A . n
A 1 16 TYR 16 32 32 TYR TYR A . n
A 1 17 GLY 17 33 33 GLY GLY A . n
A 1 18 SER 18 34 34 SER SER A . n
A 1 19 ASN 19 35 35 ASN ASN A . n
A 1 20 MET 20 36 36 MET MET A . n
A 1 21 THR 21 37 37 THR THR A . n
A 1 22 ILE 22 38 38 ILE ILE A . n
A 1 23 GLU 23 39 39 GLU GLU A . n
A 1 24 CYS 24 40 40 CYS CYS A . n
A 1 25 LYS 25 41 41 LYS LYS A . n
A 1 26 PHE 26 42 42 PHE PHE A . n
A 1 27 PRO 27 43 43 PRO PRO A . n
A 1 28 VAL 28 44 44 VAL VAL A . n
A 1 29 GLU 29 45 45 GLU ALA A . n
A 1 30 LYS 30 46 46 LYS LYS A . n
A 1 31 GLN 31 47 47 GLN ALA A . n
A 1 32 LEU 32 48 48 LEU LEU A . n
A 1 33 ASP 33 49 49 ASP ASP A . n
A 1 34 LEU 34 50 50 LEU LEU A . n
A 1 35 ALA 35 51 51 ALA ALA A . n
A 1 36 ALA 36 52 52 ALA ALA A . n
A 1 37 LEU 37 53 53 LEU LEU A . n
A 1 38 ILE 38 54 54 ILE ILE A . n
A 1 39 VAL 39 55 55 VAL VAL A . n
A 1 40 TYR 40 56 56 TYR TYR A . n
A 1 41 TRP 41 57 57 TRP TRP A . n
A 1 42 GLU 42 58 58 GLU GLU A . n
A 1 43 MET 43 59 59 MET MET A . n
A 1 44 GLU 44 60 60 GLU GLU A . n
A 1 45 ASP 45 61 61 ASP ASP A . n
A 1 46 LYS 46 62 62 LYS LYS A . n
A 1 47 ASN 47 63 63 ASN ASN A . n
A 1 48 ILE 48 64 64 ILE ILE A . n
A 1 49 ILE 49 65 65 ILE ILE A . n
A 1 50 GLN 50 66 66 GLN GLN A . n
A 1 51 PHE 51 67 67 PHE PHE A . n
A 1 52 VAL 52 68 68 VAL VAL A . n
A 1 53 HIS 53 69 69 HIS HIS A . n
A 1 54 GLY 54 70 70 GLY GLY A . n
A 1 55 GLU 55 71 71 GLU GLU A . n
A 1 56 GLU 56 72 72 GLU GLU A . n
A 1 57 ASP 57 73 73 ASP ASP A . n
A 1 58 LEU 58 74 74 LEU LEU A . n
A 1 59 LYS 59 75 75 LYS LYS A . n
A 1 60 THR 60 76 76 THR THR A . n
A 1 61 GLN 61 77 77 GLN GLN A . n
A 1 62 HIS 62 78 78 HIS HIS A . n
A 1 63 SER 63 79 79 SER SER A . n
A 1 64 SER 64 80 80 SER SER A . n
A 1 65 TYR 65 81 81 TYR TYR A . n
A 1 66 ARG 66 82 82 ARG ARG A . n
A 1 67 GLN 67 83 83 GLN GLN A . n
A 1 68 ARG 68 84 84 ARG ARG A . n
A 1 69 ALA 69 85 85 ALA ALA A . n
A 1 70 ARG 70 86 86 ARG ARG A . n
A 1 71 LEU 71 87 87 LEU LEU A . n
A 1 72 LEU 72 88 88 LEU LEU A . n
A 1 73 LYS 73 89 89 LYS LYS A . n
A 1 74 ASP 74 90 90 ASP ASP A . n
A 1 75 GLN 75 91 91 GLN GLN A . n
A 1 76 LEU 76 92 92 LEU LEU A . n
A 1 77 SER 77 93 93 SER SER A . n
A 1 78 LEU 78 94 94 LEU LEU A . n
A 1 79 GLY 79 95 95 GLY GLY A . n
A 1 80 ASN 80 96 96 ASN ASN A . n
A 1 81 ALA 81 97 97 ALA ALA A . n
A 1 82 ALA 82 98 98 ALA ALA A . n
A 1 83 LEU 83 99 99 LEU LEU A . n
A 1 84 GLN 84 100 100 GLN GLN A . n
A 1 85 ILE 85 101 101 ILE ILE A . n
A 1 86 THR 86 102 102 THR THR A . n
A 1 87 ASP 87 103 103 ASP ASP A . n
A 1 88 VAL 88 104 104 VAL VAL A . n
A 1 89 LYS 89 105 105 LYS LYS A . n
A 1 90 LEU 90 106 106 LEU LEU A . n
A 1 91 GLN 91 107 107 GLN GLN A . n
A 1 92 ASP 92 108 108 ASP ASP A . n
A 1 93 ALA 93 109 109 ALA ALA A . n
A 1 94 GLY 94 110 110 GLY GLY A . n
A 1 95 VAL 95 111 111 VAL VAL A . n
A 1 96 TYR 96 112 112 TYR TYR A . n
A 1 97 ARG 97 113 113 ARG ARG A . n
A 1 98 CYS 98 114 114 CYS CYS A . n
A 1 99 MET 99 115 115 MET MET A . n
A 1 100 ILE 100 116 116 ILE ILE A . n
A 1 101 SER 101 117 117 SER SER A . n
A 1 102 TYR 102 118 118 TYR TYR A . n
A 1 103 GLY 103 119 119 GLY GLY A . n
A 1 104 GLY 104 120 120 GLY GLY A . n
A 1 105 ALA 105 121 121 ALA ALA A . n
A 1 106 ASP 106 122 122 ASP ASP A . n
A 1 107 TYR 107 123 123 TYR TYR A . n
A 1 108 LYS 108 124 124 LYS LYS A . n
A 1 109 ARG 109 125 125 ARG ARG A . n
A 1 110 ILE 110 126 126 ILE ILE A . n
A 1 111 THR 111 127 127 THR THR A . n
A 1 112 VAL 112 128 128 VAL VAL A . n
A 1 113 LYS 113 129 129 LYS LYS A . n
A 1 114 VAL 114 130 130 VAL VAL A . n
A 1 115 ASN 115 131 131 ASN ASN A . n
A 1 116 ALA 116 132 132 ALA ALA A . n
A 1 117 PRO 117 133 133 PRO PRO A . n
A 1 118 TYR 118 134 134 TYR TYR A . n
A 1 119 ALA 119 135 135 ALA ALA A . n
A 1 120 ALA 120 136 136 ALA ALA A . n
A 1 121 ALA 121 137 137 ALA ALA A . n
A 1 122 LEU 122 138 138 LEU LEU A . n
A 1 123 GLU 123 139 139 GLU GLU A . n
A 1 124 HIS 124 140 140 HIS HIS A . n
A 1 125 HIS 125 141 141 HIS HIS A . n
A 1 126 HIS 126 142 142 HIS ALA A . n
A 1 127 HIS 127 143 ? ? ? A . n
A 1 128 HIS 128 144 ? ? ? A . n
A 1 129 HIS 129 145 ? ? ? A . n
B 1 1 MET 1 17 ? ? ? B . n
B 1 2 ALA 2 18 18 ALA ALA B . n
B 1 3 PHE 3 19 19 PHE PHE B . n
B 1 4 THR 4 20 20 THR THR B . n
B 1 5 VAL 5 21 21 VAL VAL B . n
B 1 6 THR 6 22 22 THR THR B . n
B 1 7 VAL 7 23 23 VAL VAL B . n
B 1 8 PRO 8 24 24 PRO PRO B . n
B 1 9 LYS 9 25 25 LYS LYS B . n
B 1 10 ASP 10 26 26 ASP ASP B . n
B 1 11 LEU 11 27 27 LEU LEU B . n
B 1 12 TYR 12 28 28 TYR TYR B . n
B 1 13 VAL 13 29 29 VAL VAL B . n
B 1 14 VAL 14 30 30 VAL VAL B . n
B 1 15 GLU 15 31 31 GLU GLU B . n
B 1 16 TYR 16 32 32 TYR TYR B . n
B 1 17 GLY 17 33 33 GLY GLY B . n
B 1 18 SER 18 34 34 SER SER B . n
B 1 19 ASN 19 35 35 ASN ASN B . n
B 1 20 MET 20 36 36 MET MET B . n
B 1 21 THR 21 37 37 THR THR B . n
B 1 22 ILE 22 38 38 ILE ILE B . n
B 1 23 GLU 23 39 39 GLU GLU B . n
B 1 24 CYS 24 40 40 CYS CYS B . n
B 1 25 LYS 25 41 41 LYS LYS B . n
B 1 26 PHE 26 42 42 PHE PHE B . n
B 1 27 PRO 27 43 43 PRO PRO B . n
B 1 28 VAL 28 44 44 VAL VAL B . n
B 1 29 GLU 29 45 45 GLU ALA B . n
B 1 30 LYS 30 46 46 LYS LYS B . n
B 1 31 GLN 31 47 47 GLN ALA B . n
B 1 32 LEU 32 48 48 LEU LEU B . n
B 1 33 ASP 33 49 49 ASP ASP B . n
B 1 34 LEU 34 50 50 LEU LEU B . n
B 1 35 ALA 35 51 51 ALA ALA B . n
B 1 36 ALA 36 52 52 ALA ALA B . n
B 1 37 LEU 37 53 53 LEU LEU B . n
B 1 38 ILE 38 54 54 ILE ILE B . n
B 1 39 VAL 39 55 55 VAL VAL B . n
B 1 40 TYR 40 56 56 TYR TYR B . n
B 1 41 TRP 41 57 57 TRP TRP B . n
B 1 42 GLU 42 58 58 GLU GLU B . n
B 1 43 MET 43 59 59 MET MET B . n
B 1 44 GLU 44 60 60 GLU GLU B . n
B 1 45 ASP 45 61 61 ASP ASP B . n
B 1 46 LYS 46 62 62 LYS LYS B . n
B 1 47 ASN 47 63 63 ASN ASN B . n
B 1 48 ILE 48 64 64 ILE ILE B . n
B 1 49 ILE 49 65 65 ILE ILE B . n
B 1 50 GLN 50 66 66 GLN GLN B . n
B 1 51 PHE 51 67 67 PHE PHE B . n
B 1 52 VAL 52 68 68 VAL VAL B . n
B 1 53 HIS 53 69 69 HIS HIS B . n
B 1 54 GLY 54 70 70 GLY GLY B . n
B 1 55 GLU 55 71 71 GLU GLU B . n
B 1 56 GLU 56 72 72 GLU GLU B . n
B 1 57 ASP 57 73 73 ASP ASP B . n
B 1 58 LEU 58 74 74 LEU LEU B . n
B 1 59 LYS 59 75 75 LYS LYS B . n
B 1 60 THR 60 76 76 THR THR B . n
B 1 61 GLN 61 77 77 GLN GLN B . n
B 1 62 HIS 62 78 78 HIS HIS B . n
B 1 63 SER 63 79 79 SER SER B . n
B 1 64 SER 64 80 80 SER SER B . n
B 1 65 TYR 65 81 81 TYR TYR B . n
B 1 66 ARG 66 82 82 ARG ARG B . n
B 1 67 GLN 67 83 83 GLN GLN B . n
B 1 68 ARG 68 84 84 ARG ARG B . n
B 1 69 ALA 69 85 85 ALA ALA B . n
B 1 70 ARG 70 86 86 ARG ARG B . n
B 1 71 LEU 71 87 87 LEU LEU B . n
B 1 72 LEU 72 88 88 LEU LEU B . n
B 1 73 LYS 73 89 89 LYS LYS B . n
B 1 74 ASP 74 90 90 ASP ASP B . n
B 1 75 GLN 75 91 91 GLN GLN B . n
B 1 76 LEU 76 92 92 LEU LEU B . n
B 1 77 SER 77 93 93 SER SER B . n
B 1 78 LEU 78 94 94 LEU LEU B . n
B 1 79 GLY 79 95 95 GLY GLY B . n
B 1 80 ASN 80 96 96 ASN ASN B . n
B 1 81 ALA 81 97 97 ALA ALA B . n
B 1 82 ALA 82 98 98 ALA ALA B . n
B 1 83 LEU 83 99 99 LEU LEU B . n
B 1 84 GLN 84 100 100 GLN GLN B . n
B 1 85 ILE 85 101 101 ILE ILE B . n
B 1 86 THR 86 102 102 THR THR B . n
B 1 87 ASP 87 103 103 ASP ASP B . n
B 1 88 VAL 88 104 104 VAL VAL B . n
B 1 89 LYS 89 105 105 LYS LYS B . n
B 1 90 LEU 90 106 106 LEU LEU B . n
B 1 91 GLN 91 107 107 GLN GLN B . n
B 1 92 ASP 92 108 108 ASP ASP B . n
B 1 93 ALA 93 109 109 ALA ALA B . n
B 1 94 GLY 94 110 110 GLY GLY B . n
B 1 95 VAL 95 111 111 VAL VAL B . n
B 1 96 TYR 96 112 112 TYR TYR B . n
B 1 97 ARG 97 113 113 ARG ARG B . n
B 1 98 CYS 98 114 114 CYS CYS B . n
B 1 99 MET 99 115 115 MET MET B . n
B 1 100 ILE 100 116 116 ILE ILE B . n
B 1 101 SER 101 117 117 SER SER B . n
B 1 102 TYR 102 118 118 TYR TYR B . n
B 1 103 GLY 103 119 119 GLY GLY B . n
B 1 104 GLY 104 120 120 GLY GLY B . n
B 1 105 ALA 105 121 121 ALA ALA B . n
B 1 106 ASP 106 122 122 ASP ASP B . n
B 1 107 TYR 107 123 123 TYR TYR B . n
B 1 108 LYS 108 124 124 LYS LYS B . n
B 1 109 ARG 109 125 125 ARG ARG B . n
B 1 110 ILE 110 126 126 ILE ILE B . n
B 1 111 THR 111 127 127 THR THR B . n
B 1 112 VAL 112 128 128 VAL VAL B . n
B 1 113 LYS 113 129 129 LYS LYS B . n
B 1 114 VAL 114 130 130 VAL VAL B . n
B 1 115 ASN 115 131 131 ASN ASN B . n
B 1 116 ALA 116 132 132 ALA ALA B . n
B 1 117 PRO 117 133 133 PRO PRO B . n
B 1 118 TYR 118 134 134 TYR TYR B . n
B 1 119 ALA 119 135 135 ALA ALA B . n
B 1 120 ALA 120 136 136 ALA ALA B . n
B 1 121 ALA 121 137 137 ALA ALA B . n
B 1 122 LEU 122 138 138 LEU LEU B . n
B 1 123 GLU 123 139 139 GLU GLU B . n
B 1 124 HIS 124 140 140 HIS HIS B . n
B 1 125 HIS 125 141 141 HIS HIS B . n
B 1 126 HIS 126 142 142 HIS HIS B . n
B 1 127 HIS 127 143 143 HIS ALA B . n
B 1 128 HIS 128 144 ? ? ? B . n
B 1 129 HIS 129 145 ? ? ? B . n
#
_pdbx_nonpoly_scheme.asym_id C
_pdbx_nonpoly_scheme.entity_id 2
_pdbx_nonpoly_scheme.mon_id KSD
_pdbx_nonpoly_scheme.ndb_seq_num 1
_pdbx_nonpoly_scheme.pdb_seq_num 201
_pdbx_nonpoly_scheme.auth_seq_num 1
_pdbx_nonpoly_scheme.pdb_mon_id KSD
_pdbx_nonpoly_scheme.auth_mon_id DRG
_pdbx_nonpoly_scheme.pdb_strand_id A
_pdbx_nonpoly_scheme.pdb_ins_code .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A GLU 45 ? CG ? A GLU 29 CG
2 1 Y 1 A GLU 45 ? CD ? A GLU 29 CD
3 1 Y 1 A GLU 45 ? OE1 ? A GLU 29 OE1
4 1 Y 1 A GLU 45 ? OE2 ? A GLU 29 OE2
5 1 Y 1 A GLN 47 ? CG ? A GLN 31 CG
6 1 Y 1 A GLN 47 ? CD ? A GLN 31 CD
7 1 Y 1 A GLN 47 ? OE1 ? A GLN 31 OE1
8 1 Y 1 A GLN 47 ? NE2 ? A GLN 31 NE2
9 1 Y 1 A HIS 142 ? CG ? A HIS 126 CG
10 1 Y 1 A HIS 142 ? ND1 ? A HIS 126 ND1
11 1 Y 1 A HIS 142 ? CD2 ? A HIS 126 CD2
12 1 Y 1 A HIS 142 ? CE1 ? A HIS 126 CE1
13 1 Y 1 A HIS 142 ? NE2 ? A HIS 126 NE2
14 1 Y 1 B GLU 45 ? CG ? B GLU 29 CG
15 1 Y 1 B GLU 45 ? CD ? B GLU 29 CD
16 1 Y 1 B GLU 45 ? OE1 ? B GLU 29 OE1
17 1 Y 1 B GLU 45 ? OE2 ? B GLU 29 OE2
18 1 Y 1 B GLN 47 ? CG ? B GLN 31 CG
19 1 Y 1 B GLN 47 ? CD ? B GLN 31 CD
20 1 Y 1 B GLN 47 ? OE1 ? B GLN 31 OE1
21 1 Y 1 B GLN 47 ? NE2 ? B GLN 31 NE2
22 1 Y 1 B HIS 143 ? CG ? B HIS 127 CG
23 1 Y 1 B HIS 143 ? ND1 ? B HIS 127 ND1
24 1 Y 1 B HIS 143 ? CD2 ? B HIS 127 CD2
25 1 Y 1 B HIS 143 ? CE1 ? B HIS 127 CE1
26 1 Y 1 B HIS 143 ? NE2 ? B HIS 127 NE2
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 2
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 6NM8
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 33.455
_cell.length_a_esd ?
_cell.length_b 54.604
_cell.length_b_esd ?
_cell.length_c 141.272
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 8
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 6NM8
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 18
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 2 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 6NM8
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.27
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 45.77
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 8.5
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 291
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '29% PEG 4000, 0.28 M NaCl, 0.01 M Tris'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS EIGER X 9M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2017-08-13
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0003
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'APS BEAMLINE 21-ID-D'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.0003
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 21-ID-D
_diffrn_source.pdbx_synchrotron_site APS
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 6NM8
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 2.792
_reflns.d_resolution_low 50.000
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 6839
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 99.300
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 11.700
_reflns.pdbx_Rmerge_I_obs 0.120
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 6.400
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.962
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.126
_reflns.pdbx_Rpim_I_all 0.036
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
2.800 2.850 ? ? ? ? ? ? 322 100.000 ? ? ? ? 0.592 ? ? ? ? ? ? ? ? 12.600 ? 0.919 ? ? 0.617 0.172 ? 1 1 0.945 ?
2.850 2.900 ? ? ? ? ? ? 324 99.400 ? ? ? ? 0.657 ? ? ? ? ? ? ? ? 12.200 ? 0.879 ? ? 0.686 0.194 ? 2 1 0.933 ?
2.900 2.960 ? ? ? ? ? ? 318 100.000 ? ? ? ? 0.685 ? ? ? ? ? ? ? ? 12.100 ? 1.459 ? ? 0.715 0.205 ? 3 1 0.952 ?
2.960 3.020 ? ? ? ? ? ? 351 100.000 ? ? ? ? 0.487 ? ? ? ? ? ? ? ? 11.700 ? 0.920 ? ? 0.509 0.147 ? 4 1 0.951 ?
3.020 3.080 ? ? ? ? ? ? 343 98.800 ? ? ? ? 0.439 ? ? ? ? ? ? ? ? 10.900 ? 1.024 ? ? 0.461 0.137 ? 5 1 0.951 ?
3.080 3.150 ? ? ? ? ? ? 310 100.000 ? ? ? ? 0.339 ? ? ? ? ? ? ? ? 11.300 ? 0.919 ? ? 0.355 0.104 ? 6 1 0.986 ?
3.150 3.230 ? ? ? ? ? ? 348 99.700 ? ? ? ? 0.328 ? ? ? ? ? ? ? ? 11.900 ? 0.971 ? ? 0.342 0.097 ? 7 1 0.984 ?
3.230 3.320 ? ? ? ? ? ? 340 100.000 ? ? ? ? 0.263 ? ? ? ? ? ? ? ? 13.000 ? 0.962 ? ? 0.274 0.075 ? 8 1 0.988 ?
3.320 3.420 ? ? ? ? ? ? 335 100.000 ? ? ? ? 0.225 ? ? ? ? ? ? ? ? 12.800 ? 1.047 ? ? 0.234 0.065 ? 9 1 0.987 ?
3.420 3.530 ? ? ? ? ? ? 334 100.000 ? ? ? ? 0.173 ? ? ? ? ? ? ? ? 12.600 ? 0.985 ? ? 0.180 0.050 ? 10 1 0.990 ?
3.530 3.650 ? ? ? ? ? ? 348 100.000 ? ? ? ? 0.155 ? ? ? ? ? ? ? ? 12.400 ? 1.009 ? ? 0.162 0.045 ? 11 1 0.993 ?
3.650 3.800 ? ? ? ? ? ? 342 100.000 ? ? ? ? 0.122 ? ? ? ? ? ? ? ? 12.000 ? 0.967 ? ? 0.128 0.037 ? 12 1 0.994 ?
3.800 3.970 ? ? ? ? ? ? 333 100.000 ? ? ? ? 0.113 ? ? ? ? ? ? ? ? 11.400 ? 1.071 ? ? 0.118 0.035 ? 13 1 0.992 ?
3.970 4.180 ? ? ? ? ? ? 353 100.000 ? ? ? ? 0.084 ? ? ? ? ? ? ? ? 10.100 ? 0.898 ? ? 0.088 0.027 ? 14 1 0.997 ?
4.180 4.440 ? ? ? ? ? ? 335 100.000 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? 11.900 ? 0.976 ? ? 0.082 0.024 ? 15 1 0.996 ?
4.440 4.790 ? ? ? ? ? ? 364 99.700 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 12.500 ? 0.910 ? ? 0.067 0.019 ? 16 1 0.997 ?
4.790 5.270 ? ? ? ? ? ? 338 99.700 ? ? ? ? 0.074 ? ? ? ? ? ? ? ? 11.700 ? 0.901 ? ? 0.078 0.023 ? 17 1 0.995 ?
5.270 6.030 ? ? ? ? ? ? 360 100.000 ? ? ? ? 0.068 ? ? ? ? ? ? ? ? 11.400 ? 0.731 ? ? 0.071 0.021 ? 18 1 0.998 ?
6.030 7.590 ? ? ? ? ? ? 369 100.000 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? 9.600 ? 0.799 ? ? 0.082 0.025 ? 19 1 0.997 ?
7.590 50.000 ? ? ? ? ? ? 372 90.300 ? ? ? ? 0.071 ? ? ? ? ? ? ? ? 9.900 ? 0.873 ? ? 0.074 0.021 ? 20 1 0.998 ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 98.900
_refine.B_iso_mean 38.9110
_refine.B_iso_min 7.940
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 6NM8
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 2.7920
_refine.ls_d_res_low 20.2630
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 6786
_refine.ls_number_reflns_R_free 345
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 98.8600
_refine.ls_percent_reflns_R_free 5.0800
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1999
_refine.ls_R_factor_R_free 0.3041
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1947
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.360
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 6NP9
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 30.2500
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.3100
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.cycle_id final
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.d_res_high 2.7920
_refine_hist.d_res_low 20.2630
_refine_hist.pdbx_number_atoms_ligand 32
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 2020
_refine_hist.pdbx_number_residues_total 251
_refine_hist.pdbx_B_iso_mean_ligand 29.97
_refine_hist.pdbx_number_atoms_protein 1988
_refine_hist.pdbx_number_atoms_nucleic_acid 0
#
loop_
_refine_ls_restr_ncs.pdbx_ordinal
_refine_ls_restr_ncs.pdbx_refine_id
_refine_ls_restr_ncs.pdbx_ens_id
_refine_ls_restr_ncs.dom_id
_refine_ls_restr_ncs.pdbx_type
_refine_ls_restr_ncs.pdbx_auth_asym_id
_refine_ls_restr_ncs.pdbx_number
_refine_ls_restr_ncs.pdbx_rms
_refine_ls_restr_ncs.weight_position
_refine_ls_restr_ncs.ncs_model_details
_refine_ls_restr_ncs.rms_dev_position
_refine_ls_restr_ncs.rms_dev_B_iso
_refine_ls_restr_ncs.weight_B_iso
_refine_ls_restr_ncs.pdbx_asym_id
_refine_ls_restr_ncs.pdbx_weight
1 'X-RAY DIFFRACTION' 1 1 TORSIONAL A 724 8.769 ? ? ? ? ? ? ?
2 'X-RAY DIFFRACTION' 1 2 TORSIONAL B 724 8.769 ? ? ? ? ? ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'X-RAY DIFFRACTION' 2.7919 3.5145 3255 . 157 3098 98.0000 . . . 0.3762 0.0000 0.2365 . . . . . . 2 . . .
'X-RAY DIFFRACTION' 3.5145 20.2638 3531 . 188 3343 100.0000 . . . 0.2734 0.0000 0.1763 . . . . . . 2 . . .
#
loop_
_struct_ncs_dom.pdbx_ens_id
_struct_ncs_dom.id
_struct_ncs_dom.details
1 1 '(chain A and (resid 18 through 30 or resid 32 through 35 or resid 37 through 142))'
1 2 '(chain B and (resid 18 through 30 or resid 32 through 35 or resid 37 through 141 or resid 143))'
#
loop_
_struct_ncs_dom_lim.pdbx_ens_id
_struct_ncs_dom_lim.dom_id
_struct_ncs_dom_lim.pdbx_component_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.beg_label_alt_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
_struct_ncs_dom_lim.end_label_alt_id
_struct_ncs_dom_lim.beg_auth_asym_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_auth_seq_id
_struct_ncs_dom_lim.end_auth_asym_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_auth_seq_id
_struct_ncs_dom_lim.pdbx_refine_code
_struct_ncs_dom_lim.selection_details
1 1 1 A ALA 2 . A VAL 14 . A ALA 18 A VAL 30 ?
'(chain A and (resid 18 through 30 or resid 32 through 35 or resid 37 through 142))'
1 1 2 A TYR 16 . A ASN 19 . A TYR 32 A ASN 35 ?
'(chain A and (resid 18 through 30 or resid 32 through 35 or resid 37 through 142))'
1 1 3 A THR 21 . A HIS 126 . A THR 37 A HIS 142 ?
'(chain A and (resid 18 through 30 or resid 32 through 35 or resid 37 through 142))'
1 2 1 B ALA 2 . B VAL 14 . B ALA 18 B VAL 30 ?
'(chain B and (resid 18 through 30 or resid 32 through 35 or resid 37 through 141 or resid 143))'
1 2 2 B TYR 16 . B ASN 19 . B TYR 32 B ASN 35 ?
'(chain B and (resid 18 through 30 or resid 32 through 35 or resid 37 through 141 or resid 143))'
1 2 3 B THR 21 . B HIS 125 . B THR 37 B HIS 141 ?
'(chain B and (resid 18 through 30 or resid 32 through 35 or resid 37 through 141 or resid 143))'
1 2 4 B HIS 127 . B HIS 127 . B HIS 143 B HIS 143 ?
'(chain B and (resid 18 through 30 or resid 32 through 35 or resid 37 through 141 or resid 143))'
#
_struct_ncs_ens.id 1
_struct_ncs_ens.details ?
#
_struct.entry_id 6NM8
_struct.title 'IgV-V76T BMS compound 105'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 6NM8
_struct_keywords.text
;Fragment-based screening, Structure-based design, PD-L1 inhibitor, Cancer drug discovery, Immunotherapy, IMMUNE SYSTEM, immune system-inhibitor complex
;
_struct_keywords.pdbx_keywords 'immune system/inhibitor'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code PD1L1_HUMAN
_struct_ref.pdbx_db_accession Q9NZQ7
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAA
LQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPY
;
_struct_ref.pdbx_align_begin 19
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 6NM8 A 3 ? 118 ? Q9NZQ7 19 ? 134 ? 19 134
2 1 6NM8 B 3 ? 118 ? Q9NZQ7 19 ? 134 ? 19 134
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 6NM8 MET A 1 ? UNP Q9NZQ7 ? ? 'initiating methionine' 17 1
1 6NM8 ALA A 2 ? UNP Q9NZQ7 ? ? 'expression tag' 18 2
1 6NM8 THR A 60 ? UNP Q9NZQ7 VAL 76 'engineered mutation' 76 3
1 6NM8 ALA A 119 ? UNP Q9NZQ7 ? ? 'expression tag' 135 4
1 6NM8 ALA A 120 ? UNP Q9NZQ7 ? ? 'expression tag' 136 5
1 6NM8 ALA A 121 ? UNP Q9NZQ7 ? ? 'expression tag' 137 6
1 6NM8 LEU A 122 ? UNP Q9NZQ7 ? ? 'expression tag' 138 7
1 6NM8 GLU A 123 ? UNP Q9NZQ7 ? ? 'expression tag' 139 8
1 6NM8 HIS A 124 ? UNP Q9NZQ7 ? ? 'expression tag' 140 9
1 6NM8 HIS A 125 ? UNP Q9NZQ7 ? ? 'expression tag' 141 10
1 6NM8 HIS A 126 ? UNP Q9NZQ7 ? ? 'expression tag' 142 11
1 6NM8 HIS A 127 ? UNP Q9NZQ7 ? ? 'expression tag' 143 12
1 6NM8 HIS A 128 ? UNP Q9NZQ7 ? ? 'expression tag' 144 13
1 6NM8 HIS A 129 ? UNP Q9NZQ7 ? ? 'expression tag' 145 14
2 6NM8 MET B 1 ? UNP Q9NZQ7 ? ? 'initiating methionine' 17 15
2 6NM8 ALA B 2 ? UNP Q9NZQ7 ? ? 'expression tag' 18 16
2 6NM8 THR B 60 ? UNP Q9NZQ7 VAL 76 'engineered mutation' 76 17
2 6NM8 ALA B 119 ? UNP Q9NZQ7 ? ? 'expression tag' 135 18
2 6NM8 ALA B 120 ? UNP Q9NZQ7 ? ? 'expression tag' 136 19
2 6NM8 ALA B 121 ? UNP Q9NZQ7 ? ? 'expression tag' 137 20
2 6NM8 LEU B 122 ? UNP Q9NZQ7 ? ? 'expression tag' 138 21
2 6NM8 GLU B 123 ? UNP Q9NZQ7 ? ? 'expression tag' 139 22
2 6NM8 HIS B 124 ? UNP Q9NZQ7 ? ? 'expression tag' 140 23
2 6NM8 HIS B 125 ? UNP Q9NZQ7 ? ? 'expression tag' 141 24
2 6NM8 HIS B 126 ? UNP Q9NZQ7 ? ? 'expression tag' 142 25
2 6NM8 HIS B 127 ? UNP Q9NZQ7 ? ? 'expression tag' 143 26
2 6NM8 HIS B 128 ? UNP Q9NZQ7 ? ? 'expression tag' 144 27
2 6NM8 HIS B 129 ? UNP Q9NZQ7 ? ? 'expression tag' 145 28
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 1400 ?
1 MORE -4 ?
1 'SSA (A^2)' 13230 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration'
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 AA1 ASP A 33 ? ALA A 35 ? ASP A 49 ALA A 51 5 ? 3
HELX_P HELX_P2 AA2 HIS A 62 ? ARG A 66 ? HIS A 78 ARG A 82 5 ? 5
HELX_P HELX_P3 AA3 LEU A 72 ? SER A 77 ? LEU A 88 SER A 93 1 ? 6
HELX_P HELX_P4 AA4 LYS A 89 ? ALA A 93 ? LYS A 105 ALA A 109 5 ? 5
HELX_P HELX_P5 AA5 PRO A 117 ? HIS A 126 ? PRO A 133 HIS A 142 1 ? 10
HELX_P HELX_P6 AA6 ASP B 33 ? ALA B 35 ? ASP B 49 ALA B 51 5 ? 3
HELX_P HELX_P7 AA7 HIS B 62 ? ARG B 66 ? HIS B 78 ARG B 82 5 ? 5
HELX_P HELX_P8 AA8 LYS B 73 ? SER B 77 ? LYS B 89 SER B 93 5 ? 5
HELX_P HELX_P9 AA9 LYS B 89 ? ALA B 93 ? LYS B 105 ALA B 109 5 ? 5
HELX_P HELX_P10 AB1 PRO B 117 ? HIS B 125 ? PRO B 133 HIS B 141 1 ? 9
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 40 A CYS 114 1_555 ? ? ? ? ? ? ? 2.033 ? ?
disulf2 disulf ? ? B CYS 24 SG ? ? ? 1_555 B CYS 98 SG ? ? B CYS 40 B CYS 114 1_555 ? ? ? ? ? ? ? 2.000 ? ?
#
_struct_conn_type.id disulf
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 CYS A 24 ? CYS A 98 ? CYS A 40 ? 1_555 CYS A 114 ? 1_555 SG SG . . . None 'Disulfide bridge'
2 CYS B 24 ? CYS B 98 ? CYS B 40 ? 1_555 CYS B 114 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA1 ? 6 ?
AA2 ? 3 ?
AA3 ? 6 ?
AA4 ? 3 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA1 1 2 ? parallel
AA1 2 3 ? anti-parallel
AA1 3 4 ? anti-parallel
AA1 4 5 ? anti-parallel
AA1 5 6 ? anti-parallel
AA2 1 2 ? anti-parallel
AA2 2 3 ? anti-parallel
AA3 1 2 ? parallel
AA3 2 3 ? anti-parallel
AA3 3 4 ? anti-parallel
AA3 4 5 ? anti-parallel
AA3 5 6 ? anti-parallel
AA4 1 2 ? anti-parallel
AA4 2 3 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 LEU A 11 ? GLU A 15 ? LEU A 27 GLU A 31
AA1 2 ALA A 105 ? ASN A 115 ? ALA A 121 ASN A 131
AA1 3 GLY A 94 ? TYR A 102 ? GLY A 110 TYR A 118
AA1 4 LEU A 37 ? MET A 43 ? LEU A 53 MET A 59
AA1 5 LYS A 46 ? VAL A 52 ? LYS A 62 VAL A 68
AA1 6 GLU A 55 ? ASP A 57 ? GLU A 71 ASP A 73
AA2 1 MET A 20 ? ILE A 22 ? MET A 36 ILE A 38
AA2 2 LEU A 83 ? ILE A 85 ? LEU A 99 ILE A 101
AA2 3 ALA A 69 ? LEU A 71 ? ALA A 85 LEU A 87
AA3 1 LEU B 11 ? GLU B 15 ? LEU B 27 GLU B 31
AA3 2 ALA B 105 ? ASN B 115 ? ALA B 121 ASN B 131
AA3 3 GLY B 94 ? TYR B 102 ? GLY B 110 TYR B 118
AA3 4 LEU B 37 ? MET B 43 ? LEU B 53 MET B 59
AA3 5 ASN B 47 ? VAL B 52 ? ASN B 63 VAL B 68
AA3 6 GLU B 55 ? ASP B 57 ? GLU B 71 ASP B 73
AA4 1 MET B 20 ? ILE B 22 ? MET B 36 ILE B 38
AA4 2 LEU B 83 ? ILE B 85 ? LEU B 99 ILE B 101
AA4 3 ALA B 69 ? LEU B 71 ? ALA B 85 LEU B 87
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA1 1 2 N TYR A 12 ? N TYR A 28 O THR A 111 ? O THR A 127
AA1 2 3 O ILE A 110 ? O ILE A 126 N TYR A 96 ? N TYR A 112
AA1 3 4 O MET A 99 ? O MET A 115 N TYR A 40 ? N TYR A 56
AA1 4 5 N TRP A 41 ? N TRP A 57 O ILE A 48 ? O ILE A 64
AA1 5 6 N GLN A 50 ? N GLN A 66 O ASP A 57 ? O ASP A 73
AA2 1 2 N MET A 20 ? N MET A 36 O ILE A 85 ? O ILE A 101
AA2 2 3 O GLN A 84 ? O GLN A 100 N ARG A 70 ? N ARG A 86
AA3 1 2 N TYR B 12 ? N TYR B 28 O LYS B 113 ? O LYS B 129
AA3 2 3 O ILE B 110 ? O ILE B 126 N TYR B 96 ? N TYR B 112
AA3 3 4 O MET B 99 ? O MET B 115 N TYR B 40 ? N TYR B 56
AA3 4 5 N TRP B 41 ? N TRP B 57 O ILE B 48 ? O ILE B 64
AA3 5 6 N GLN B 50 ? N GLN B 66 O ASP B 57 ? O ASP B 73
AA4 1 2 N ILE B 22 ? N ILE B 38 O LEU B 83 ? O LEU B 99
AA4 2 3 O GLN B 84 ? O GLN B 100 N ARG B 70 ? N ARG B 86
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id KSD
_struct_site.pdbx_auth_seq_id 201
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 12
_struct_site.details 'binding site for residue KSD A 201'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 12 TYR A 40 ? TYR A 56 . ? 1_555 ?
2 AC1 12 GLN A 50 ? GLN A 66 . ? 1_555 ?
3 AC1 12 VAL A 52 ? VAL A 68 . ? 1_555 ?
4 AC1 12 SER A 101 ? SER A 117 . ? 1_555 ?
5 AC1 12 ALA B 2 ? ALA B 18 . ? 1_555 ?
6 AC1 12 PHE B 3 ? PHE B 19 . ? 1_555 ?
7 AC1 12 THR B 4 ? THR B 20 . ? 1_555 ?
8 AC1 12 TYR B 40 ? TYR B 56 . ? 1_555 ?
9 AC1 12 LYS B 59 ? LYS B 75 . ? 1_455 ?
10 AC1 12 ALA B 105 ? ALA B 121 . ? 1_555 ?
11 AC1 12 ASP B 106 ? ASP B 122 . ? 1_555 ?
12 AC1 12 TYR B 107 ? TYR B 123 . ? 1_555 ?
#
_pdbx_entry_details.entry_id 6NM8
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 CA
_pdbx_validate_rmsd_angle.auth_asym_id_1 A
_pdbx_validate_rmsd_angle.auth_comp_id_1 CYS
_pdbx_validate_rmsd_angle.auth_seq_id_1 40
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 CB
_pdbx_validate_rmsd_angle.auth_asym_id_2 A
_pdbx_validate_rmsd_angle.auth_comp_id_2 CYS
_pdbx_validate_rmsd_angle.auth_seq_id_2 40
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 SG
_pdbx_validate_rmsd_angle.auth_asym_id_3 A
_pdbx_validate_rmsd_angle.auth_comp_id_3 CYS
_pdbx_validate_rmsd_angle.auth_seq_id_3 40
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 121.42
_pdbx_validate_rmsd_angle.angle_target_value 114.20
_pdbx_validate_rmsd_angle.angle_deviation 7.22
_pdbx_validate_rmsd_angle.angle_standard_deviation 1.10
_pdbx_validate_rmsd_angle.linker_flag N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 TYR A 32 ? ? -35.87 134.76
2 1 LYS A 46 ? ? -113.92 -153.93
3 1 GLU A 60 ? ? 50.95 -112.94
4 1 SER A 79 ? ? -27.74 -60.09
5 1 SER A 80 ? ? -67.90 2.11
6 1 LYS B 46 ? ? -124.19 -138.32
7 1 SER B 79 ? ? -26.74 -57.12
8 1 GLN B 83 ? ? 52.71 14.73
9 1 LEU B 88 ? ? -69.02 92.94
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A MET 17 ? A MET 1
2 1 Y 1 A HIS 143 ? A HIS 127
3 1 Y 1 A HIS 144 ? A HIS 128
4 1 Y 1 A HIS 145 ? A HIS 129
5 1 Y 1 B MET 17 ? B MET 1
6 1 Y 1 B HIS 144 ? B HIS 128
7 1 Y 1 B HIS 145 ? B HIS 129
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
GLN N N N N 88
GLN CA C N S 89
GLN C C N N 90
GLN O O N N 91
GLN CB C N N 92
GLN CG C N N 93
GLN CD C N N 94
GLN OE1 O N N 95
GLN NE2 N N N 96
GLN OXT O N N 97
GLN H H N N 98
GLN H2 H N N 99
GLN HA H N N 100
GLN HB2 H N N 101
GLN HB3 H N N 102
GLN HG2 H N N 103
GLN HG3 H N N 104
GLN HE21 H N N 105
GLN HE22 H N N 106
GLN HXT H N N 107
GLU N N N N 108
GLU CA C N S 109
GLU C C N N 110
GLU O O N N 111
GLU CB C N N 112
GLU CG C N N 113
GLU CD C N N 114
GLU OE1 O N N 115
GLU OE2 O N N 116
GLU OXT O N N 117
GLU H H N N 118
GLU H2 H N N 119
GLU HA H N N 120
GLU HB2 H N N 121
GLU HB3 H N N 122
GLU HG2 H N N 123
GLU HG3 H N N 124
GLU HE2 H N N 125
GLU HXT H N N 126
GLY N N N N 127
GLY CA C N N 128
GLY C C N N 129
GLY O O N N 130
GLY OXT O N N 131
GLY H H N N 132
GLY H2 H N N 133
GLY HA2 H N N 134
GLY HA3 H N N 135
GLY HXT H N N 136
HIS N N N N 137
HIS CA C N S 138
HIS C C N N 139
HIS O O N N 140
HIS CB C N N 141
HIS CG C Y N 142
HIS ND1 N Y N 143
HIS CD2 C Y N 144
HIS CE1 C Y N 145
HIS NE2 N Y N 146
HIS OXT O N N 147
HIS H H N N 148
HIS H2 H N N 149
HIS HA H N N 150
HIS HB2 H N N 151
HIS HB3 H N N 152
HIS HD1 H N N 153
HIS HD2 H N N 154
HIS HE1 H N N 155
HIS HE2 H N N 156
HIS HXT H N N 157
ILE N N N N 158
ILE CA C N S 159
ILE C C N N 160
ILE O O N N 161
ILE CB C N S 162
ILE CG1 C N N 163
ILE CG2 C N N 164
ILE CD1 C N N 165
ILE OXT O N N 166
ILE H H N N 167
ILE H2 H N N 168
ILE HA H N N 169
ILE HB H N N 170
ILE HG12 H N N 171
ILE HG13 H N N 172
ILE HG21 H N N 173
ILE HG22 H N N 174
ILE HG23 H N N 175
ILE HD11 H N N 176
ILE HD12 H N N 177
ILE HD13 H N N 178
ILE HXT H N N 179
KSD C4 C Y N 180
KSD C14 C N N 181
KSD C5 C Y N 182
KSD C6 C Y N 183
KSD C11 C Y N 184
KSD C7 C Y N 185
KSD C8 C Y N 186
KSD C9 C Y N 187
KSD C10 C Y N 188
KSD C12 C Y N 189
KSD C13 C N N 190
KSD N1 N N N 191
KSD C3 C Y N 192
KSD C1 C Y N 193
KSD C15 C Y N 194
KSD C16 C Y N 195
KSD C17 C Y N 196
KSD C18 C Y N 197
KSD C19 C Y N 198
KSD C2 C Y N 199
KSD C20 C Y N 200
KSD C21 C N N 201
KSD C22 C N N 202
KSD C23 C N N 203
KSD C24 C N R 204
KSD C25 C N N 205
KSD C26 C N N 206
KSD O1 O N N 207
KSD O2 O N N 208
KSD O3 O N N 209
KSD O4 O N N 210
KSD O5 O N N 211
KSD H1 H N N 212
KSD H2 H N N 213
KSD H3 H N N 214
KSD H4 H N N 215
KSD H5 H N N 216
KSD H6 H N N 217
KSD H7 H N N 218
KSD H8 H N N 219
KSD H9 H N N 220
KSD H10 H N N 221
KSD H11 H N N 222
KSD H12 H N N 223
KSD H13 H N N 224
KSD H15 H N N 225
KSD H16 H N N 226
KSD H17 H N N 227
KSD H18 H N N 228
KSD H19 H N N 229
KSD H20 H N N 230
KSD H21 H N N 231
KSD H22 H N N 232
KSD H23 H N N 233
KSD H24 H N N 234
KSD H25 H N N 235
KSD H26 H N N 236
KSD H27 H N N 237
KSD H28 H N N 238
KSD H29 H N N 239
KSD H30 H N N 240
LEU N N N N 241
LEU CA C N S 242
LEU C C N N 243
LEU O O N N 244
LEU CB C N N 245
LEU CG C N N 246
LEU CD1 C N N 247
LEU CD2 C N N 248
LEU OXT O N N 249
LEU H H N N 250
LEU H2 H N N 251
LEU HA H N N 252
LEU HB2 H N N 253
LEU HB3 H N N 254
LEU HG H N N 255
LEU HD11 H N N 256
LEU HD12 H N N 257
LEU HD13 H N N 258
LEU HD21 H N N 259
LEU HD22 H N N 260
LEU HD23 H N N 261
LEU HXT H N N 262
LYS N N N N 263
LYS CA C N S 264
LYS C C N N 265
LYS O O N N 266
LYS CB C N N 267
LYS CG C N N 268
LYS CD C N N 269
LYS CE C N N 270
LYS NZ N N N 271
LYS OXT O N N 272
LYS H H N N 273
LYS H2 H N N 274
LYS HA H N N 275
LYS HB2 H N N 276
LYS HB3 H N N 277
LYS HG2 H N N 278
LYS HG3 H N N 279
LYS HD2 H N N 280
LYS HD3 H N N 281
LYS HE2 H N N 282
LYS HE3 H N N 283
LYS HZ1 H N N 284
LYS HZ2 H N N 285
LYS HZ3 H N N 286
LYS HXT H N N 287
MET N N N N 288
MET CA C N S 289
MET C C N N 290
MET O O N N 291
MET CB C N N 292
MET CG C N N 293
MET SD S N N 294
MET CE C N N 295
MET OXT O N N 296
MET H H N N 297
MET H2 H N N 298
MET HA H N N 299
MET HB2 H N N 300
MET HB3 H N N 301
MET HG2 H N N 302
MET HG3 H N N 303
MET HE1 H N N 304
MET HE2 H N N 305
MET HE3 H N N 306
MET HXT H N N 307
PHE N N N N 308
PHE CA C N S 309
PHE C C N N 310
PHE O O N N 311
PHE CB C N N 312
PHE CG C Y N 313
PHE CD1 C Y N 314
PHE CD2 C Y N 315
PHE CE1 C Y N 316
PHE CE2 C Y N 317
PHE CZ C Y N 318
PHE OXT O N N 319
PHE H H N N 320
PHE H2 H N N 321
PHE HA H N N 322
PHE HB2 H N N 323
PHE HB3 H N N 324
PHE HD1 H N N 325
PHE HD2 H N N 326
PHE HE1 H N N 327
PHE HE2 H N N 328
PHE HZ H N N 329
PHE HXT H N N 330
PRO N N N N 331
PRO CA C N S 332
PRO C C N N 333
PRO O O N N 334
PRO CB C N N 335
PRO CG C N N 336
PRO CD C N N 337
PRO OXT O N N 338
PRO H H N N 339
PRO HA H N N 340
PRO HB2 H N N 341
PRO HB3 H N N 342
PRO HG2 H N N 343
PRO HG3 H N N 344
PRO HD2 H N N 345
PRO HD3 H N N 346
PRO HXT H N N 347
SER N N N N 348
SER CA C N S 349
SER C C N N 350
SER O O N N 351
SER CB C N N 352
SER OG O N N 353
SER OXT O N N 354
SER H H N N 355
SER H2 H N N 356
SER HA H N N 357
SER HB2 H N N 358
SER HB3 H N N 359
SER HG H N N 360
SER HXT H N N 361
THR N N N N 362
THR CA C N S 363
THR C C N N 364
THR O O N N 365
THR CB C N R 366
THR OG1 O N N 367
THR CG2 C N N 368
THR OXT O N N 369
THR H H N N 370
THR H2 H N N 371
THR HA H N N 372
THR HB H N N 373
THR HG1 H N N 374
THR HG21 H N N 375
THR HG22 H N N 376
THR HG23 H N N 377
THR HXT H N N 378
TRP N N N N 379
TRP CA C N S 380
TRP C C N N 381
TRP O O N N 382
TRP CB C N N 383
TRP CG C Y N 384
TRP CD1 C Y N 385
TRP CD2 C Y N 386
TRP NE1 N Y N 387
TRP CE2 C Y N 388
TRP CE3 C Y N 389
TRP CZ2 C Y N 390
TRP CZ3 C Y N 391
TRP CH2 C Y N 392
TRP OXT O N N 393
TRP H H N N 394
TRP H2 H N N 395
TRP HA H N N 396
TRP HB2 H N N 397
TRP HB3 H N N 398
TRP HD1 H N N 399
TRP HE1 H N N 400
TRP HE3 H N N 401
TRP HZ2 H N N 402
TRP HZ3 H N N 403
TRP HH2 H N N 404
TRP HXT H N N 405
TYR N N N N 406
TYR CA C N S 407
TYR C C N N 408
TYR O O N N 409
TYR CB C N N 410
TYR CG C Y N 411
TYR CD1 C Y N 412
TYR CD2 C Y N 413
TYR CE1 C Y N 414
TYR CE2 C Y N 415
TYR CZ C Y N 416
TYR OH O N N 417
TYR OXT O N N 418
TYR H H N N 419
TYR H2 H N N 420
TYR HA H N N 421
TYR HB2 H N N 422
TYR HB3 H N N 423
TYR HD1 H N N 424
TYR HD2 H N N 425
TYR HE1 H N N 426
TYR HE2 H N N 427
TYR HH H N N 428
TYR HXT H N N 429
VAL N N N N 430
VAL CA C N S 431
VAL C C N N 432
VAL O O N N 433
VAL CB C N N 434
VAL CG1 C N N 435
VAL CG2 C N N 436
VAL OXT O N N 437
VAL H H N N 438
VAL H2 H N N 439
VAL HA H N N 440
VAL HB H N N 441
VAL HG11 H N N 442
VAL HG12 H N N 443
VAL HG13 H N N 444
VAL HG21 H N N 445
VAL HG22 H N N 446
VAL HG23 H N N 447
VAL HXT H N N 448
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
GLN N CA sing N N 83
GLN N H sing N N 84
GLN N H2 sing N N 85
GLN CA C sing N N 86
GLN CA CB sing N N 87
GLN CA HA sing N N 88
GLN C O doub N N 89
GLN C OXT sing N N 90
GLN CB CG sing N N 91
GLN CB HB2 sing N N 92
GLN CB HB3 sing N N 93
GLN CG CD sing N N 94
GLN CG HG2 sing N N 95
GLN CG HG3 sing N N 96
GLN CD OE1 doub N N 97
GLN CD NE2 sing N N 98
GLN NE2 HE21 sing N N 99
GLN NE2 HE22 sing N N 100
GLN OXT HXT sing N N 101
GLU N CA sing N N 102
GLU N H sing N N 103
GLU N H2 sing N N 104
GLU CA C sing N N 105
GLU CA CB sing N N 106
GLU CA HA sing N N 107
GLU C O doub N N 108
GLU C OXT sing N N 109
GLU CB CG sing N N 110
GLU CB HB2 sing N N 111
GLU CB HB3 sing N N 112
GLU CG CD sing N N 113
GLU CG HG2 sing N N 114
GLU CG HG3 sing N N 115
GLU CD OE1 doub N N 116
GLU CD OE2 sing N N 117
GLU OE2 HE2 sing N N 118
GLU OXT HXT sing N N 119
GLY N CA sing N N 120
GLY N H sing N N 121
GLY N H2 sing N N 122
GLY CA C sing N N 123
GLY CA HA2 sing N N 124
GLY CA HA3 sing N N 125
GLY C O doub N N 126
GLY C OXT sing N N 127
GLY OXT HXT sing N N 128
HIS N CA sing N N 129
HIS N H sing N N 130
HIS N H2 sing N N 131
HIS CA C sing N N 132
HIS CA CB sing N N 133
HIS CA HA sing N N 134
HIS C O doub N N 135
HIS C OXT sing N N 136
HIS CB CG sing N N 137
HIS CB HB2 sing N N 138
HIS CB HB3 sing N N 139
HIS CG ND1 sing Y N 140
HIS CG CD2 doub Y N 141
HIS ND1 CE1 doub Y N 142
HIS ND1 HD1 sing N N 143
HIS CD2 NE2 sing Y N 144
HIS CD2 HD2 sing N N 145
HIS CE1 NE2 sing Y N 146
HIS CE1 HE1 sing N N 147
HIS NE2 HE2 sing N N 148
HIS OXT HXT sing N N 149
ILE N CA sing N N 150
ILE N H sing N N 151
ILE N H2 sing N N 152
ILE CA C sing N N 153
ILE CA CB sing N N 154
ILE CA HA sing N N 155
ILE C O doub N N 156
ILE C OXT sing N N 157
ILE CB CG1 sing N N 158
ILE CB CG2 sing N N 159
ILE CB HB sing N N 160
ILE CG1 CD1 sing N N 161
ILE CG1 HG12 sing N N 162
ILE CG1 HG13 sing N N 163
ILE CG2 HG21 sing N N 164
ILE CG2 HG22 sing N N 165
ILE CG2 HG23 sing N N 166
ILE CD1 HD11 sing N N 167
ILE CD1 HD12 sing N N 168
ILE CD1 HD13 sing N N 169
ILE OXT HXT sing N N 170
KSD C21 O2 sing N N 171
KSD O2 C19 sing N N 172
KSD C19 C20 doub Y N 173
KSD C19 C18 sing Y N 174
KSD N1 C23 sing N N 175
KSD N1 C24 sing N N 176
KSD C20 C15 sing Y N 177
KSD C13 C1 sing N N 178
KSD C26 C24 sing N N 179
KSD C23 C18 sing N N 180
KSD C18 C17 doub Y N 181
KSD C24 C25 sing N N 182
KSD C14 O1 sing N N 183
KSD C14 C6 sing N N 184
KSD C10 C9 doub Y N 185
KSD C10 C11 sing Y N 186
KSD C9 C8 sing Y N 187
KSD C11 C12 doub Y N 188
KSD C15 O1 sing N N 189
KSD C15 C16 doub Y N 190
KSD C1 C6 doub Y N 191
KSD C1 C2 sing Y N 192
KSD C8 C7 doub Y N 193
KSD C12 C7 sing Y N 194
KSD C7 C2 sing N N 195
KSD C6 C5 sing Y N 196
KSD C17 C16 sing Y N 197
KSD C17 O3 sing N N 198
KSD C25 O4 doub N N 199
KSD C25 O5 sing N N 200
KSD C2 C3 doub Y N 201
KSD O3 C22 sing N N 202
KSD C5 C4 doub Y N 203
KSD C3 C4 sing Y N 204
KSD C4 H1 sing N N 205
KSD C14 H2 sing N N 206
KSD C14 H3 sing N N 207
KSD C5 H4 sing N N 208
KSD C11 H5 sing N N 209
KSD C8 H6 sing N N 210
KSD C9 H7 sing N N 211
KSD C10 H8 sing N N 212
KSD C12 H9 sing N N 213
KSD C13 H10 sing N N 214
KSD C13 H11 sing N N 215
KSD C13 H12 sing N N 216
KSD N1 H13 sing N N 217
KSD C3 H15 sing N N 218
KSD C16 H16 sing N N 219
KSD C20 H17 sing N N 220
KSD C21 H18 sing N N 221
KSD C21 H19 sing N N 222
KSD C21 H20 sing N N 223
KSD C22 H21 sing N N 224
KSD C22 H22 sing N N 225
KSD C22 H23 sing N N 226
KSD C23 H24 sing N N 227
KSD C23 H25 sing N N 228
KSD C24 H26 sing N N 229
KSD C26 H27 sing N N 230
KSD C26 H28 sing N N 231
KSD C26 H29 sing N N 232
KSD O5 H30 sing N N 233
LEU N CA sing N N 234
LEU N H sing N N 235
LEU N H2 sing N N 236
LEU CA C sing N N 237
LEU CA CB sing N N 238
LEU CA HA sing N N 239
LEU C O doub N N 240
LEU C OXT sing N N 241
LEU CB CG sing N N 242
LEU CB HB2 sing N N 243
LEU CB HB3 sing N N 244
LEU CG CD1 sing N N 245
LEU CG CD2 sing N N 246
LEU CG HG sing N N 247
LEU CD1 HD11 sing N N 248
LEU CD1 HD12 sing N N 249
LEU CD1 HD13 sing N N 250
LEU CD2 HD21 sing N N 251
LEU CD2 HD22 sing N N 252
LEU CD2 HD23 sing N N 253
LEU OXT HXT sing N N 254
LYS N CA sing N N 255
LYS N H sing N N 256
LYS N H2 sing N N 257
LYS CA C sing N N 258
LYS CA CB sing N N 259
LYS CA HA sing N N 260
LYS C O doub N N 261
LYS C OXT sing N N 262
LYS CB CG sing N N 263
LYS CB HB2 sing N N 264
LYS CB HB3 sing N N 265
LYS CG CD sing N N 266
LYS CG HG2 sing N N 267
LYS CG HG3 sing N N 268
LYS CD CE sing N N 269
LYS CD HD2 sing N N 270
LYS CD HD3 sing N N 271
LYS CE NZ sing N N 272
LYS CE HE2 sing N N 273
LYS CE HE3 sing N N 274
LYS NZ HZ1 sing N N 275
LYS NZ HZ2 sing N N 276
LYS NZ HZ3 sing N N 277
LYS OXT HXT sing N N 278
MET N CA sing N N 279
MET N H sing N N 280
MET N H2 sing N N 281
MET CA C sing N N 282
MET CA CB sing N N 283
MET CA HA sing N N 284
MET C O doub N N 285
MET C OXT sing N N 286
MET CB CG sing N N 287
MET CB HB2 sing N N 288
MET CB HB3 sing N N 289
MET CG SD sing N N 290
MET CG HG2 sing N N 291
MET CG HG3 sing N N 292
MET SD CE sing N N 293
MET CE HE1 sing N N 294
MET CE HE2 sing N N 295
MET CE HE3 sing N N 296
MET OXT HXT sing N N 297
PHE N CA sing N N 298
PHE N H sing N N 299
PHE N H2 sing N N 300
PHE CA C sing N N 301
PHE CA CB sing N N 302
PHE CA HA sing N N 303
PHE C O doub N N 304
PHE C OXT sing N N 305
PHE CB CG sing N N 306
PHE CB HB2 sing N N 307
PHE CB HB3 sing N N 308
PHE CG CD1 doub Y N 309
PHE CG CD2 sing Y N 310
PHE CD1 CE1 sing Y N 311
PHE CD1 HD1 sing N N 312
PHE CD2 CE2 doub Y N 313
PHE CD2 HD2 sing N N 314
PHE CE1 CZ doub Y N 315
PHE CE1 HE1 sing N N 316
PHE CE2 CZ sing Y N 317
PHE CE2 HE2 sing N N 318
PHE CZ HZ sing N N 319
PHE OXT HXT sing N N 320
PRO N CA sing N N 321
PRO N CD sing N N 322
PRO N H sing N N 323
PRO CA C sing N N 324
PRO CA CB sing N N 325
PRO CA HA sing N N 326
PRO C O doub N N 327
PRO C OXT sing N N 328
PRO CB CG sing N N 329
PRO CB HB2 sing N N 330
PRO CB HB3 sing N N 331
PRO CG CD sing N N 332
PRO CG HG2 sing N N 333
PRO CG HG3 sing N N 334
PRO CD HD2 sing N N 335
PRO CD HD3 sing N N 336
PRO OXT HXT sing N N 337
SER N CA sing N N 338
SER N H sing N N 339
SER N H2 sing N N 340
SER CA C sing N N 341
SER CA CB sing N N 342
SER CA HA sing N N 343
SER C O doub N N 344
SER C OXT sing N N 345
SER CB OG sing N N 346
SER CB HB2 sing N N 347
SER CB HB3 sing N N 348
SER OG HG sing N N 349
SER OXT HXT sing N N 350
THR N CA sing N N 351
THR N H sing N N 352
THR N H2 sing N N 353
THR CA C sing N N 354
THR CA CB sing N N 355
THR CA HA sing N N 356
THR C O doub N N 357
THR C OXT sing N N 358
THR CB OG1 sing N N 359
THR CB CG2 sing N N 360
THR CB HB sing N N 361
THR OG1 HG1 sing N N 362
THR CG2 HG21 sing N N 363
THR CG2 HG22 sing N N 364
THR CG2 HG23 sing N N 365
THR OXT HXT sing N N 366
TRP N CA sing N N 367
TRP N H sing N N 368
TRP N H2 sing N N 369
TRP CA C sing N N 370
TRP CA CB sing N N 371
TRP CA HA sing N N 372
TRP C O doub N N 373
TRP C OXT sing N N 374
TRP CB CG sing N N 375
TRP CB HB2 sing N N 376
TRP CB HB3 sing N N 377
TRP CG CD1 doub Y N 378
TRP CG CD2 sing Y N 379
TRP CD1 NE1 sing Y N 380
TRP CD1 HD1 sing N N 381
TRP CD2 CE2 doub Y N 382
TRP CD2 CE3 sing Y N 383
TRP NE1 CE2 sing Y N 384
TRP NE1 HE1 sing N N 385
TRP CE2 CZ2 sing Y N 386
TRP CE3 CZ3 doub Y N 387
TRP CE3 HE3 sing N N 388
TRP CZ2 CH2 doub Y N 389
TRP CZ2 HZ2 sing N N 390
TRP CZ3 CH2 sing Y N 391
TRP CZ3 HZ3 sing N N 392
TRP CH2 HH2 sing N N 393
TRP OXT HXT sing N N 394
TYR N CA sing N N 395
TYR N H sing N N 396
TYR N H2 sing N N 397
TYR CA C sing N N 398
TYR CA CB sing N N 399
TYR CA HA sing N N 400
TYR C O doub N N 401
TYR C OXT sing N N 402
TYR CB CG sing N N 403
TYR CB HB2 sing N N 404
TYR CB HB3 sing N N 405
TYR CG CD1 doub Y N 406
TYR CG CD2 sing Y N 407
TYR CD1 CE1 sing Y N 408
TYR CD1 HD1 sing N N 409
TYR CD2 CE2 doub Y N 410
TYR CD2 HD2 sing N N 411
TYR CE1 CZ doub Y N 412
TYR CE1 HE1 sing N N 413
TYR CE2 CZ sing Y N 414
TYR CE2 HE2 sing N N 415
TYR CZ OH sing N N 416
TYR OH HH sing N N 417
TYR OXT HXT sing N N 418
VAL N CA sing N N 419
VAL N H sing N N 420
VAL N H2 sing N N 421
VAL CA C sing N N 422
VAL CA CB sing N N 423
VAL CA HA sing N N 424
VAL C O doub N N 425
VAL C OXT sing N N 426
VAL CB CG1 sing N N 427
VAL CB CG2 sing N N 428
VAL CB HB sing N N 429
VAL CG1 HG11 sing N N 430
VAL CG1 HG12 sing N N 431
VAL CG1 HG13 sing N N 432
VAL CG2 HG21 sing N N 433
VAL CG2 HG22 sing N N 434
VAL CG2 HG23 sing N N 435
VAL OXT HXT sing N N 436
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'National Institutes of Health/National Center for Research Resources (NIH/NCRR)' 'United States' 5T32GM065086 1
'National Science Foundation (NSF, United States)' 'United States' 0922862 2
'National Institutes of Health/National Center for Research Resources (NIH/NCRR)' 'United States' 'S10 RR025677' 3
'National Institutes of Health/National Center for Research Resources (NIH/NCRR)' 'United States' 'S10 RR026915' 4
'Department of Energy (DOE, United States)' 'United States' DE-AC02-06CH11357 5
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 6NP9
_pdbx_initial_refinement_model.details ?
#
_atom_sites.entry_id 6NM8
_atom_sites.fract_transf_matrix[1][1] 0.029891
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.018314
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.007079
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_