HEADER LYASE 11-JAN-19 6NMO TITLE CRYSTAL STRUCTURE OF 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE TITLE 2 SYNTHASE (ISPF) BURKHOLDERIA PSEUDOMALLEI IN COMPLEX WITH LIGAND SR-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: MECPS; COMPND 5 EC: 4.6.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI (STRAIN 1710B); SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: ISPF, BURPS1710B_2511; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 11-OCT-23 6NMO 1 LINK REVDAT 3 11-MAR-20 6NMO 1 JRNL REMARK REVDAT 2 22-JAN-20 6NMO 1 TITLE KEYWDS JRNL REVDAT 1 15-JAN-20 6NMO 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,P.G.PIERCE,M.ROUFFET,D.D.LORIMER, JRNL AUTH 2 P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF 2C-METHYL-D-ERYTHRITOL JRNL TITL 2 2,4-CYCLODIPHOSPHATE SYNTHASE (ISPF) BURKHOLDERIA JRNL TITL 3 PSEUDOMALLEI IN COMPLEX WITH LIGAND SR-4. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 79693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.470 REMARK 3 FREE R VALUE TEST SET COUNT : 1965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5098 - 3.4942 1.00 5925 169 0.1301 0.1546 REMARK 3 2 3.4942 - 2.7736 1.00 5858 147 0.1376 0.1501 REMARK 3 3 2.7736 - 2.4230 1.00 5825 145 0.1362 0.1630 REMARK 3 4 2.4230 - 2.2015 1.00 5843 142 0.1251 0.1499 REMARK 3 5 2.2015 - 2.0437 1.00 5782 158 0.1211 0.1697 REMARK 3 6 2.0437 - 1.9232 1.00 5791 136 0.1188 0.1497 REMARK 3 7 1.9232 - 1.8269 0.99 5735 152 0.1167 0.1645 REMARK 3 8 1.8269 - 1.7474 0.98 5715 149 0.1114 0.1669 REMARK 3 9 1.7474 - 1.6801 0.96 5609 134 0.1154 0.1576 REMARK 3 10 1.6801 - 1.6221 0.95 5471 132 0.1104 0.1540 REMARK 3 11 1.6221 - 1.5714 0.93 5404 127 0.1108 0.1556 REMARK 3 12 1.5714 - 1.5265 0.90 5262 133 0.1159 0.1697 REMARK 3 13 1.5265 - 1.4863 0.84 4831 129 0.1262 0.1865 REMARK 3 14 1.4863 - 1.4500 0.81 4677 112 0.1515 0.2289 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3740 REMARK 3 ANGLE : 0.946 5090 REMARK 3 CHIRALITY : 0.089 587 REMARK 3 PLANARITY : 0.005 696 REMARK 3 DIHEDRAL : 18.753 1391 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79703 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 44.489 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 9.687 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.55 REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3QHD, NATIVE PROTEIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HAMPTON RESEARCH INDEX, CONDITION C9:: REMARK 280 0.5% (V/V) JEFFAMINE ED-2003, 1100MM SODIUM MALONATE DIBASIC, REMARK 280 100MM HEPES FREE ACID / NAOH PH 7.0: BUPSA.00122.A.D11.PD00455 REMARK 280 AT 22MG/ML + 9MM COMPOUND BSI109013/SR-4: CRYO: 20% EG AND : REMARK 280 TRAY 302690C9: PUCK: PHR5-8, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.54000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.54000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 428 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 468 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 334 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 ALA A 162 REMARK 465 SER B 0 REMARK 465 ALA B 160 REMARK 465 ALA B 161 REMARK 465 ALA B 162 REMARK 465 ALA C 160 REMARK 465 ALA C 161 REMARK 465 ALA C 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 HIS B 36 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 65 CG OD1 OD2 REMARK 470 THR B 66 OG1 CG2 REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 MET C 1 CG SD CE REMARK 470 GLU C 30 CG CD OE1 OE2 REMARK 470 ASP C 65 CG OD1 OD2 REMARK 470 LYS C 71 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 134 O HOH B 301 2.12 REMARK 500 O HOH A 323 O HOH A 434 2.16 REMARK 500 OH TYR C 29 O HOH C 301 2.17 REMARK 500 O HOH C 301 O HOH C 364 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 352 O HOH A 352 2555 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 29 148.74 -170.55 REMARK 500 SER B 37 -130.18 60.37 REMARK 500 TYR C 29 149.55 -174.39 REMARK 500 SER C 37 -121.14 48.80 REMARK 500 SER C 37 -121.24 48.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 HIS A 12 NE2 93.8 REMARK 620 3 HIS A 44 ND1 96.9 103.9 REMARK 620 4 MLI A 203 O7 170.6 90.4 90.2 REMARK 620 5 HOH A 304 O 91.6 83.7 168.0 80.5 REMARK 620 6 HOH A 315 O 91.1 164.1 90.5 82.7 81.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD2 REMARK 620 2 HIS B 12 NE2 97.6 REMARK 620 3 HIS B 44 ND1 91.7 120.6 REMARK 620 4 HOH C 425 O 124.7 113.2 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD2 REMARK 620 2 HIS C 12 NE2 85.3 REMARK 620 3 HIS C 44 ND1 91.6 94.5 REMARK 620 4 QMS C 202 N2 95.6 168.8 96.6 REMARK 620 5 QMS C 202 N1 171.3 101.2 93.7 76.9 REMARK 620 6 HOH C 325 O 91.1 85.8 177.3 83.0 83.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QMS C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUPSA.00122.A RELATED DB: TARGETTRACK DBREF 6NMO A 1 162 UNP Q3JRA0 ISPF_BURP1 1 162 DBREF 6NMO B 1 162 UNP Q3JRA0 ISPF_BURP1 1 162 DBREF 6NMO C 1 162 UNP Q3JRA0 ISPF_BURP1 1 162 SEQADV 6NMO SER A 0 UNP Q3JRA0 EXPRESSION TAG SEQADV 6NMO SER B 0 UNP Q3JRA0 EXPRESSION TAG SEQADV 6NMO SER C 0 UNP Q3JRA0 EXPRESSION TAG SEQRES 1 A 163 SER MET ASP PHE ARG ILE GLY GLN GLY TYR ASP VAL HIS SEQRES 2 A 163 GLN LEU VAL PRO GLY ARG PRO LEU ILE ILE GLY GLY VAL SEQRES 3 A 163 THR ILE PRO TYR GLU ARG GLY LEU LEU GLY HIS SER ASP SEQRES 4 A 163 ALA ASP VAL LEU LEU HIS ALA ILE THR ASP ALA LEU PHE SEQRES 5 A 163 GLY ALA ALA ALA LEU GLY ASP ILE GLY ARG HIS PHE SER SEQRES 6 A 163 ASP THR ASP PRO ARG PHE LYS GLY ALA ASP SER ARG ALA SEQRES 7 A 163 LEU LEU ARG GLU CYS ALA SER ARG VAL ALA GLN ALA GLY SEQRES 8 A 163 PHE ALA ILE ARG ASN VAL ASP SER THR ILE ILE ALA GLN SEQRES 9 A 163 ALA PRO LYS LEU ALA PRO HIS ILE ASP ALA MET ARG ALA SEQRES 10 A 163 ASN ILE ALA ALA ASP LEU ASP LEU PRO LEU ASP ARG VAL SEQRES 11 A 163 ASN VAL LYS ALA LYS THR ASN GLU LYS LEU GLY TYR LEU SEQRES 12 A 163 GLY ARG GLY GLU GLY ILE GLU ALA GLN ALA ALA ALA LEU SEQRES 13 A 163 VAL VAL ARG GLU ALA ALA ALA SEQRES 1 B 163 SER MET ASP PHE ARG ILE GLY GLN GLY TYR ASP VAL HIS SEQRES 2 B 163 GLN LEU VAL PRO GLY ARG PRO LEU ILE ILE GLY GLY VAL SEQRES 3 B 163 THR ILE PRO TYR GLU ARG GLY LEU LEU GLY HIS SER ASP SEQRES 4 B 163 ALA ASP VAL LEU LEU HIS ALA ILE THR ASP ALA LEU PHE SEQRES 5 B 163 GLY ALA ALA ALA LEU GLY ASP ILE GLY ARG HIS PHE SER SEQRES 6 B 163 ASP THR ASP PRO ARG PHE LYS GLY ALA ASP SER ARG ALA SEQRES 7 B 163 LEU LEU ARG GLU CYS ALA SER ARG VAL ALA GLN ALA GLY SEQRES 8 B 163 PHE ALA ILE ARG ASN VAL ASP SER THR ILE ILE ALA GLN SEQRES 9 B 163 ALA PRO LYS LEU ALA PRO HIS ILE ASP ALA MET ARG ALA SEQRES 10 B 163 ASN ILE ALA ALA ASP LEU ASP LEU PRO LEU ASP ARG VAL SEQRES 11 B 163 ASN VAL LYS ALA LYS THR ASN GLU LYS LEU GLY TYR LEU SEQRES 12 B 163 GLY ARG GLY GLU GLY ILE GLU ALA GLN ALA ALA ALA LEU SEQRES 13 B 163 VAL VAL ARG GLU ALA ALA ALA SEQRES 1 C 163 SER MET ASP PHE ARG ILE GLY GLN GLY TYR ASP VAL HIS SEQRES 2 C 163 GLN LEU VAL PRO GLY ARG PRO LEU ILE ILE GLY GLY VAL SEQRES 3 C 163 THR ILE PRO TYR GLU ARG GLY LEU LEU GLY HIS SER ASP SEQRES 4 C 163 ALA ASP VAL LEU LEU HIS ALA ILE THR ASP ALA LEU PHE SEQRES 5 C 163 GLY ALA ALA ALA LEU GLY ASP ILE GLY ARG HIS PHE SER SEQRES 6 C 163 ASP THR ASP PRO ARG PHE LYS GLY ALA ASP SER ARG ALA SEQRES 7 C 163 LEU LEU ARG GLU CYS ALA SER ARG VAL ALA GLN ALA GLY SEQRES 8 C 163 PHE ALA ILE ARG ASN VAL ASP SER THR ILE ILE ALA GLN SEQRES 9 C 163 ALA PRO LYS LEU ALA PRO HIS ILE ASP ALA MET ARG ALA SEQRES 10 C 163 ASN ILE ALA ALA ASP LEU ASP LEU PRO LEU ASP ARG VAL SEQRES 11 C 163 ASN VAL LYS ALA LYS THR ASN GLU LYS LEU GLY TYR LEU SEQRES 12 C 163 GLY ARG GLY GLU GLY ILE GLU ALA GLN ALA ALA ALA LEU SEQRES 13 C 163 VAL VAL ARG GLU ALA ALA ALA HET ZN A 201 1 HET DMS A 202 4 HET MLI A 203 7 HET MLI B 201 7 HET ZN B 202 1 HET EDO B 203 4 HET EDO B 204 4 HET MLI B 205 14 HET ZN C 201 1 HET QMS C 202 15 HET EDO C 203 4 HETNAM ZN ZINC ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM MLI MALONATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM QMS N-(QUINOLIN-8-YL)METHANESULFONAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 ZN 3(ZN 2+) FORMUL 5 DMS C2 H6 O S FORMUL 6 MLI 3(C3 H2 O4 2-) FORMUL 9 EDO 3(C2 H6 O2) FORMUL 13 QMS C10 H10 N2 O2 S FORMUL 15 HOH *514(H2 O) HELIX 1 AA1 ASP A 40 ALA A 54 1 15 HELIX 2 AA2 ASP A 58 PHE A 63 1 6 HELIX 3 AA3 ASP A 67 LYS A 71 5 5 HELIX 4 AA4 ASP A 74 ALA A 89 1 16 HELIX 5 AA5 LEU A 107 PRO A 109 5 3 HELIX 6 AA6 HIS A 110 ASP A 123 1 14 HELIX 7 AA7 PRO A 125 VAL A 129 5 5 HELIX 8 AA8 LEU A 139 ARG A 144 1 6 HELIX 9 AA9 ASP B 40 ALA B 54 1 15 HELIX 10 AB1 ASP B 58 PHE B 63 1 6 HELIX 11 AB2 ASP B 67 LYS B 71 5 5 HELIX 12 AB3 ASP B 74 ALA B 89 1 16 HELIX 13 AB4 LEU B 107 PRO B 109 5 3 HELIX 14 AB5 HIS B 110 ASP B 123 1 14 HELIX 15 AB6 PRO B 125 VAL B 129 5 5 HELIX 16 AB7 LEU B 139 ARG B 144 1 6 HELIX 17 AB8 ASP C 40 ALA C 54 1 15 HELIX 18 AB9 ASP C 58 PHE C 63 1 6 HELIX 19 AC1 ASP C 74 ALA C 89 1 16 HELIX 20 AC2 LEU C 107 PRO C 109 5 3 HELIX 21 AC3 HIS C 110 ASP C 123 1 14 HELIX 22 AC4 PRO C 125 VAL C 129 5 5 HELIX 23 AC5 LEU C 139 ARG C 144 1 6 SHEET 1 AA1 5 ARG A 31 LEU A 33 0 SHEET 2 AA1 5 PHE A 3 PRO A 16 -1 N VAL A 15 O GLY A 32 SHEET 3 AA1 5 GLY A 147 ARG A 158 -1 O ALA A 150 N ASP A 10 SHEET 4 AA1 5 PHE A 91 ILE A 101 -1 N ARG A 94 O LEU A 155 SHEET 5 AA1 5 LYS A 132 LYS A 134 1 O LYS A 132 N ILE A 100 SHEET 1 AA2 2 LEU A 20 ILE A 22 0 SHEET 2 AA2 2 VAL A 25 ILE A 27 -1 O ILE A 27 N LEU A 20 SHEET 1 AA3 5 GLY B 32 LEU B 33 0 SHEET 2 AA3 5 ASP B 2 VAL B 15 -1 N VAL B 15 O GLY B 32 SHEET 3 AA3 5 GLY B 147 ARG B 158 -1 O ALA B 150 N ASP B 10 SHEET 4 AA3 5 PHE B 91 ILE B 101 -1 N ALA B 92 O VAL B 157 SHEET 5 AA3 5 LYS B 132 LYS B 134 1 O LYS B 132 N ILE B 100 SHEET 1 AA4 2 LEU B 20 ILE B 22 0 SHEET 2 AA4 2 VAL B 25 ILE B 27 -1 O ILE B 27 N LEU B 20 SHEET 1 AA5 5 ARG C 31 LEU C 33 0 SHEET 2 AA5 5 PHE C 3 PRO C 16 -1 N VAL C 15 O GLY C 32 SHEET 3 AA5 5 GLY C 147 ARG C 158 -1 O ALA C 150 N ASP C 10 SHEET 4 AA5 5 PHE C 91 ILE C 101 -1 N ARG C 94 O LEU C 155 SHEET 5 AA5 5 LYS C 132 LYS C 134 1 O LYS C 132 N ILE C 100 SHEET 1 AA6 2 LEU C 20 ILE C 22 0 SHEET 2 AA6 2 VAL C 25 ILE C 27 -1 O ILE C 27 N LEU C 20 LINK OD2 ASP A 10 ZN ZN A 201 1555 1555 2.04 LINK NE2 HIS A 12 ZN ZN A 201 1555 1555 2.07 LINK ND1 HIS A 44 ZN ZN A 201 1555 1555 2.11 LINK ZN ZN A 201 O7 MLI A 203 1555 1555 2.18 LINK ZN ZN A 201 O HOH A 304 1555 1555 2.40 LINK ZN ZN A 201 O HOH A 315 1555 1555 2.22 LINK OD2 ASP B 10 ZN ZN B 202 1555 1555 1.95 LINK NE2 HIS B 12 ZN ZN B 202 1555 1555 2.05 LINK ND1 HIS B 44 ZN ZN B 202 1555 1555 2.05 LINK ZN ZN B 202 O HOH C 425 1555 1555 2.06 LINK OD2 ASP C 10 ZN ZN C 201 1555 1555 2.06 LINK NE2 HIS C 12 ZN ZN C 201 1555 1555 2.10 LINK ND1 HIS C 44 ZN ZN C 201 1555 1555 2.18 LINK ZN ZN C 201 N2 QMS C 202 1555 1555 2.04 LINK ZN ZN C 201 N1 QMS C 202 1555 1555 2.24 LINK ZN ZN C 201 O HOH C 325 1555 1555 2.19 CISPEP 1 ALA A 104 PRO A 105 0 -6.63 CISPEP 2 ALA B 104 PRO B 105 0 -3.43 CISPEP 3 ALA C 104 PRO C 105 0 -4.63 SITE 1 AC1 6 ASP A 10 HIS A 12 HIS A 44 MLI A 203 SITE 2 AC1 6 HOH A 304 HOH A 315 SITE 1 AC2 8 ALA A 102 GLN A 103 PRO A 105 LYS A 106 SITE 2 AC2 8 LEU A 107 LYS A 134 THR A 135 HOH A 332 SITE 1 AC3 11 HIS A 12 GLY A 35 HIS A 36 SER A 37 SITE 2 AC3 11 HIS A 44 ZN A 201 HOH A 304 HOH A 315 SITE 3 AC3 11 HOH A 327 HOH A 385 HOH B 367 SITE 1 AC4 13 GLY A 140 TYR A 141 ARG A 144 GLY B 140 SITE 2 AC4 13 TYR B 141 ARG B 144 HOH B 322 HOH B 344 SITE 3 AC4 13 HOH B 351 HOH B 378 HOH B 401 TYR C 141 SITE 4 AC4 13 ARG C 144 SITE 1 AC5 6 ASP B 10 HIS B 12 HIS B 44 HOH B 308 SITE 2 AC5 6 HOH C 306 HOH C 425 SITE 1 AC6 5 LYS B 106 LEU B 107 ALA B 108 HOH B 315 SITE 2 AC6 5 HOH B 336 SITE 1 AC7 3 HOH B 328 HOH B 389 ALA C 108 SITE 1 AC8 12 TYR A 9 TYR A 141 GLU A 149 TYR B 9 SITE 2 AC8 12 GLU B 149 HOH B 309 HOH B 311 HOH B 317 SITE 3 AC8 12 TYR C 9 TYR C 141 LEU C 142 GLU C 149 SITE 1 AC9 5 ASP C 10 HIS C 12 HIS C 44 QMS C 202 SITE 2 AC9 5 HOH C 325 SITE 1 AD1 13 LYS A 134 GLU A 137 ASP C 10 HIS C 12 SITE 2 AD1 13 LEU C 34 GLY C 35 HIS C 36 ALA C 39 SITE 3 AD1 13 HIS C 44 ILE C 59 ZN C 201 HOH C 325 SITE 4 AD1 13 HOH C 356 SITE 1 AD2 5 LYS C 106 LEU C 107 ALA C 108 HOH C 311 SITE 2 AD2 5 HOH C 367 CRYST1 117.080 67.600 60.810 90.00 96.48 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008541 0.000000 0.000971 0.00000 SCALE2 0.000000 0.014793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016550 0.00000