HEADER BIOSYNTHETIC PROTEIN 14-JAN-19 6NNC TITLE STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM TUBERCULOSIS TITLE 2 IN COMPLEX WITH NADPH AND PEMETREXED COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: FOLA, DFRA, RV2763C, MTV002.28C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIFOLATE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.RIBEIRO,S.M.CHAVEZ-PACHECO,M.V.B.DIAS REVDAT 3 13-MAR-24 6NNC 1 LINK REVDAT 2 13-NOV-19 6NNC 1 JRNL REVDAT 1 17-JUL-19 6NNC 0 JRNL AUTH J.A.RIBEIRO,S.M.CHAVEZ-PACHECO,G.S.DE OLIVEIRA,C.D.S.SILVA, JRNL AUTH 2 J.H.P.GIUDICE,G.A.LIBREROS-ZUNIGA,M.V.B.DIAS JRNL TITL CRYSTAL STRUCTURES OF THE CLOSED FORM OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS DIHYDROFOLATE REDUCTASE IN COMPLEX WITH JRNL TITL 3 DIHYDROFOLATE AND ANTIFOLATES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 682 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31282477 JRNL DOI 10.1107/S205979831900901X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 29234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1637 - 4.0009 0.99 2736 138 0.1513 0.1935 REMARK 3 2 4.0009 - 3.1765 1.00 2599 149 0.1496 0.1896 REMARK 3 3 3.1765 - 2.7752 1.00 2588 133 0.1623 0.2136 REMARK 3 4 2.7752 - 2.5216 1.00 2554 139 0.1668 0.2040 REMARK 3 5 2.5216 - 2.3409 0.99 2535 140 0.1611 0.1952 REMARK 3 6 2.3409 - 2.2029 0.99 2524 120 0.1634 0.2046 REMARK 3 7 2.2029 - 2.0926 0.99 2521 142 0.1684 0.2080 REMARK 3 8 2.0926 - 2.0016 0.98 2499 126 0.1765 0.2397 REMARK 3 9 2.0016 - 1.9245 0.98 2476 154 0.1694 0.2301 REMARK 3 10 1.9245 - 1.8581 0.96 2380 130 0.1711 0.2127 REMARK 3 11 1.8581 - 1.8000 0.92 2337 114 0.1838 0.2366 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 22.9291 0.1282 17.7536 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.1238 REMARK 3 T33: 0.1161 T12: -0.0093 REMARK 3 T13: -0.0296 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.1986 L22: 0.4743 REMARK 3 L33: 0.2465 L12: -0.4486 REMARK 3 L13: -0.4724 L23: 0.0551 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.0102 S13: 0.0593 REMARK 3 S21: -0.0118 S22: -0.0063 S23: -0.0711 REMARK 3 S31: -0.0065 S32: 0.0114 S33: 0.0011 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 154 OR REMARK 3 RESID 156 THROUGH 159)) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 154 OR REMARK 3 RESID 156 THROUGH 159)) REMARK 3 ATOM PAIRS NUMBER : 972 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NNC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29295 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULPHATE, 100 MM MES, REMARK 280 10 MM COBALT CHLORIDE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.67300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.10800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.35900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.10800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.67300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.35900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 143 O HOH B 301 1.98 REMARK 500 O HOH B 387 O HOH B 448 2.07 REMARK 500 OG SER B 159 O HOH B 302 2.13 REMARK 500 O HOH B 403 O HOH B 439 2.13 REMARK 500 O HOH B 376 O HOH B 377 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 427 O HOH B 441 2555 2.08 REMARK 500 OD1 ASP B 70 O HOH B 406 2654 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 72 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 MET B 72 CB - CG - SD ANGL. DEV. = -25.2 DEGREES REMARK 500 LEU B 102 CB - CG - CD2 ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 -159.16 -140.42 REMARK 500 PRO A 21 38.19 -88.17 REMARK 500 LEU A 86 59.46 -98.29 REMARK 500 ASP A 132 -161.48 -78.11 REMARK 500 PRO B 21 42.57 -85.80 REMARK 500 LEU B 86 66.43 -100.18 REMARK 500 ASP B 132 -163.95 -75.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 202 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 38 NE2 REMARK 620 2 HOH A 327 O 92.7 REMARK 620 3 HOH A 345 O 89.2 84.3 REMARK 620 4 HOH A 346 O 89.5 177.7 95.0 REMARK 620 5 HIS B 157 NE2 173.1 94.0 90.0 83.7 REMARK 620 6 HOH B 391 O 92.5 92.9 176.9 87.7 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 202 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 383 O REMARK 620 2 HIS B 38 NE2 173.7 REMARK 620 3 HOH B 309 O 81.7 92.8 REMARK 620 4 HOH B 335 O 92.7 89.8 84.2 REMARK 620 5 HOH B 344 O 86.1 91.4 94.9 178.6 REMARK 620 6 HOH B 395 O 96.9 88.8 175.1 91.2 89.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LYA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LYA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 DBREF 6NNC A 1 159 UNP P9WNX1 DYR_MYCTU 3 161 DBREF 6NNC B 1 159 UNP P9WNX1 DYR_MYCTU 3 161 SEQRES 1 A 159 MET VAL GLY LEU ILE TRP ALA GLN ALA THR SER GLY VAL SEQRES 2 A 159 ILE GLY ARG GLY GLY ASP ILE PRO TRP ARG LEU PRO GLU SEQRES 3 A 159 ASP GLN ALA HIS PHE ARG GLU ILE THR MET GLY HIS THR SEQRES 4 A 159 ILE VAL MET GLY ARG ARG THR TRP ASP SER LEU PRO ALA SEQRES 5 A 159 LYS VAL ARG PRO LEU PRO GLY ARG ARG ASN VAL VAL LEU SEQRES 6 A 159 SER ARG GLN ALA ASP PHE MET ALA SER GLY ALA GLU VAL SEQRES 7 A 159 VAL GLY SER LEU GLU GLU ALA LEU THR SER PRO GLU THR SEQRES 8 A 159 TRP VAL ILE GLY GLY GLY GLN VAL TYR ALA LEU ALA LEU SEQRES 9 A 159 PRO TYR ALA THR ARG CYS GLU VAL THR GLU VAL ASP ILE SEQRES 10 A 159 GLY LEU PRO ARG GLU ALA GLY ASP ALA LEU ALA PRO VAL SEQRES 11 A 159 LEU ASP GLU THR TRP ARG GLY GLU THR GLY GLU TRP ARG SEQRES 12 A 159 PHE SER ARG SER GLY LEU ARG TYR ARG LEU TYR SER TYR SEQRES 13 A 159 HIS ARG SER SEQRES 1 B 159 MET VAL GLY LEU ILE TRP ALA GLN ALA THR SER GLY VAL SEQRES 2 B 159 ILE GLY ARG GLY GLY ASP ILE PRO TRP ARG LEU PRO GLU SEQRES 3 B 159 ASP GLN ALA HIS PHE ARG GLU ILE THR MET GLY HIS THR SEQRES 4 B 159 ILE VAL MET GLY ARG ARG THR TRP ASP SER LEU PRO ALA SEQRES 5 B 159 LYS VAL ARG PRO LEU PRO GLY ARG ARG ASN VAL VAL LEU SEQRES 6 B 159 SER ARG GLN ALA ASP PHE MET ALA SER GLY ALA GLU VAL SEQRES 7 B 159 VAL GLY SER LEU GLU GLU ALA LEU THR SER PRO GLU THR SEQRES 8 B 159 TRP VAL ILE GLY GLY GLY GLN VAL TYR ALA LEU ALA LEU SEQRES 9 B 159 PRO TYR ALA THR ARG CYS GLU VAL THR GLU VAL ASP ILE SEQRES 10 B 159 GLY LEU PRO ARG GLU ALA GLY ASP ALA LEU ALA PRO VAL SEQRES 11 B 159 LEU ASP GLU THR TRP ARG GLY GLU THR GLY GLU TRP ARG SEQRES 12 B 159 PHE SER ARG SER GLY LEU ARG TYR ARG LEU TYR SER TYR SEQRES 13 B 159 HIS ARG SER HET NDP A 201 48 HET CO A 202 1 HET LYA A 203 31 HET SO4 A 204 5 HET SO4 A 205 5 HET NDP B 201 48 HET CO B 202 1 HET LYA B 203 31 HET SO4 B 204 5 HET SO4 B 205 5 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM CO COBALT (II) ION HETNAM LYA 2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3- HETNAM 2 LYA D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC HETNAM 3 LYA ACID HETNAM SO4 SULFATE ION HETSYN LYA LY231514 FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 CO 2(CO 2+) FORMUL 5 LYA 2(C20 H21 N5 O6) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *316(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 PRO A 51 ARG A 55 5 5 HELIX 4 AA4 SER A 81 LEU A 86 5 6 HELIX 5 AA5 GLY A 96 LEU A 104 1 9 HELIX 6 AA6 PRO A 105 ALA A 107 5 3 HELIX 7 AA7 LEU B 24 MET B 36 1 13 HELIX 8 AA8 ARG B 44 LEU B 50 1 7 HELIX 9 AA9 PRO B 51 ARG B 55 5 5 HELIX 10 AB1 SER B 81 LEU B 86 1 6 HELIX 11 AB2 GLY B 96 LEU B 104 1 9 HELIX 12 AB3 PRO B 105 ALA B 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N ILE A 40 O VAL A 63 SHEET 4 AA1 8 THR A 91 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA1 8 VAL A 2 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N ARG A 136 O HIS A 157 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N ILE A 40 O VAL A 63 SHEET 4 AA2 8 THR A 91 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA2 8 VAL A 2 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 SHEET 1 AA4 8 GLU B 77 VAL B 79 0 SHEET 2 AA4 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA4 8 THR B 39 GLY B 43 1 N MET B 42 O LEU B 65 SHEET 4 AA4 8 THR B 91 VAL B 93 1 O TRP B 92 N THR B 39 SHEET 5 AA4 8 VAL B 2 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA4 8 ARG B 109 VAL B 115 1 O THR B 113 N GLN B 8 SHEET 7 AA4 8 ARG B 150 HIS B 157 -1 O TYR B 154 N VAL B 112 SHEET 8 AA4 8 ARG B 136 THR B 139 -1 N ARG B 136 O HIS B 157 SHEET 1 AA5 8 GLU B 77 VAL B 79 0 SHEET 2 AA5 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA5 8 THR B 39 GLY B 43 1 N MET B 42 O LEU B 65 SHEET 4 AA5 8 THR B 91 VAL B 93 1 O TRP B 92 N THR B 39 SHEET 5 AA5 8 VAL B 2 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA5 8 ARG B 109 VAL B 115 1 O THR B 113 N GLN B 8 SHEET 7 AA5 8 ARG B 150 HIS B 157 -1 O TYR B 154 N VAL B 112 SHEET 8 AA5 8 ARG B 143 PHE B 144 -1 N ARG B 143 O TYR B 151 SHEET 1 AA6 2 VAL B 13 GLY B 15 0 SHEET 2 AA6 2 ALA B 126 LEU B 127 -1 O ALA B 126 N ILE B 14 LINK NE2 HIS A 38 CO CO A 202 1555 1555 2.16 LINK CO CO A 202 O HOH A 327 1555 1555 2.18 LINK CO CO A 202 O HOH A 345 1555 1555 2.15 LINK CO CO A 202 O HOH A 346 1555 1555 2.19 LINK CO CO A 202 NE2 HIS B 157 1555 1555 2.08 LINK CO CO A 202 O HOH B 391 1555 1555 2.16 LINK O HOH A 383 CO CO B 202 1555 1555 2.03 LINK NE2 HIS B 38 CO CO B 202 1555 1555 2.17 LINK CO CO B 202 O HOH B 309 1555 1555 2.15 LINK CO CO B 202 O HOH B 335 1555 1555 2.19 LINK CO CO B 202 O HOH B 344 1555 1555 2.30 LINK CO CO B 202 O HOH B 395 1555 1555 2.10 CISPEP 1 ARG A 55 PRO A 56 0 0.14 CISPEP 2 GLY A 95 GLY A 96 0 6.04 CISPEP 3 ARG B 55 PRO B 56 0 1.66 CISPEP 4 GLY B 95 GLY B 96 0 5.29 SITE 1 AC1 35 TRP A 6 ALA A 7 ILE A 14 GLY A 15 SITE 2 AC1 35 ARG A 16 GLY A 18 ASP A 19 ILE A 20 SITE 3 AC1 35 GLY A 43 ARG A 44 ARG A 45 THR A 46 SITE 4 AC1 35 LEU A 65 SER A 66 ARG A 67 GLN A 68 SITE 5 AC1 35 GLY A 80 ILE A 94 GLY A 96 GLY A 97 SITE 6 AC1 35 GLN A 98 VAL A 99 TYR A 100 LEU A 102 SITE 7 AC1 35 ALA A 126 LYA A 203 HOH A 306 HOH A 318 SITE 8 AC1 35 HOH A 325 HOH A 337 HOH A 338 HOH A 351 SITE 9 AC1 35 HOH A 360 HOH A 379 HOH A 399 SITE 1 AC2 6 HIS A 38 HOH A 327 HOH A 345 HOH A 346 SITE 2 AC2 6 HIS B 157 HOH B 391 SITE 1 AC3 20 ILE A 5 TRP A 6 ALA A 7 ASP A 27 SITE 2 AC3 20 GLN A 28 PHE A 31 ARG A 32 LEU A 50 SITE 3 AC3 20 LEU A 57 ARG A 60 ILE A 94 TYR A 100 SITE 4 AC3 20 THR A 113 NDP A 201 HOH A 324 HOH A 350 SITE 5 AC3 20 HOH A 362 HOH A 393 HOH A 401 HOH A 411 SITE 1 AC4 6 ARG A 23 PRO A 51 HOH A 309 HOH A 367 SITE 2 AC4 6 ARG B 32 PRO B 58 SITE 1 AC5 2 ARG A 44 ARG A 45 SITE 1 AC6 33 TRP B 6 ALA B 7 ILE B 14 GLY B 15 SITE 2 AC6 33 ARG B 16 GLY B 18 ASP B 19 ILE B 20 SITE 3 AC6 33 GLY B 43 ARG B 44 ARG B 45 THR B 46 SITE 4 AC6 33 LEU B 65 SER B 66 ARG B 67 GLN B 68 SITE 5 AC6 33 GLY B 80 ILE B 94 GLY B 96 GLY B 97 SITE 6 AC6 33 GLN B 98 VAL B 99 TYR B 100 LEU B 102 SITE 7 AC6 33 LYA B 203 HOH B 321 HOH B 322 HOH B 331 SITE 8 AC6 33 HOH B 333 HOH B 358 HOH B 372 HOH B 382 SITE 9 AC6 33 HOH B 389 SITE 1 AC7 6 HOH A 383 HIS B 38 HOH B 309 HOH B 335 SITE 2 AC7 6 HOH B 344 HOH B 395 SITE 1 AC8 21 ILE B 5 TRP B 6 ALA B 7 ASP B 27 SITE 2 AC8 21 GLN B 28 ALA B 29 PHE B 31 ARG B 32 SITE 3 AC8 21 LEU B 50 VAL B 54 ARG B 60 ILE B 94 SITE 4 AC8 21 TYR B 100 NDP B 201 HOH B 304 HOH B 307 SITE 5 AC8 21 HOH B 310 HOH B 311 HOH B 355 HOH B 369 SITE 6 AC8 21 HOH B 371 SITE 1 AC9 3 ARG B 44 ARG B 45 HOH B 394 SITE 1 AD1 4 ARG A 136 HOH A 304 ALA B 29 ARG B 146 CRYST1 61.346 70.718 72.216 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016301 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013847 0.00000