HEADER BIOSYNTHETIC PROTEIN 14-JAN-19 6NND TITLE STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM TUBERCULOSIS TITLE 2 IN COMPLEX WITH NADPH AND DIHYDROFOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: FOLA, DFRA, RV2763C, MTV002.28C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ANTIFOLATE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.RIBEIRO,S.M.CHAVEZ-PACHECO,M.V.B.DIAS REVDAT 4 13-MAR-24 6NND 1 LINK REVDAT 3 20-NOV-19 6NND 1 LINK REVDAT 2 13-NOV-19 6NND 1 JRNL REVDAT 1 17-JUL-19 6NND 0 JRNL AUTH J.A.RIBEIRO,S.M.CHAVEZ-PACHECO,G.S.DE OLIVEIRA,C.D.S.SILVA, JRNL AUTH 2 J.H.P.GIUDICE,G.A.LIBREROS-ZUNIGA,M.V.B.DIAS JRNL TITL CRYSTAL STRUCTURES OF THE CLOSED FORM OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS DIHYDROFOLATE REDUCTASE IN COMPLEX WITH JRNL TITL 3 DIHYDROFOLATE AND ANTIFOLATES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 682 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31282477 JRNL DOI 10.1107/S205979831900901X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 34608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5807 - 3.9965 0.99 2712 160 0.1624 0.1751 REMARK 3 2 3.9965 - 3.1724 1.00 2604 142 0.1583 0.1972 REMARK 3 3 3.1724 - 2.7714 1.00 2536 171 0.1733 0.2187 REMARK 3 4 2.7714 - 2.5180 1.00 2596 115 0.1741 0.2302 REMARK 3 5 2.5180 - 2.3376 1.00 2585 102 0.1597 0.2103 REMARK 3 6 2.3376 - 2.1997 1.00 2559 116 0.1695 0.2176 REMARK 3 7 2.1997 - 2.0896 1.00 2541 142 0.1641 0.2271 REMARK 3 8 2.0896 - 1.9986 1.00 2530 150 0.1830 0.2138 REMARK 3 9 1.9986 - 1.9217 1.00 2525 134 0.1778 0.2403 REMARK 3 10 1.9217 - 1.8554 1.00 2499 151 0.1749 0.2295 REMARK 3 11 1.8554 - 1.7973 1.00 2530 135 0.1899 0.2303 REMARK 3 12 1.7973 - 1.7460 0.97 2438 131 0.2112 0.2871 REMARK 3 13 1.7460 - 1.7000 0.87 2191 113 0.2451 0.2999 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 22.8196 0.0286 17.9971 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.1568 REMARK 3 T33: 0.1412 T12: -0.0014 REMARK 3 T13: -0.0224 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.3599 L22: 0.5712 REMARK 3 L33: 0.2408 L12: -0.4731 REMARK 3 L13: -0.5177 L23: 0.1061 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: -0.0392 S13: 0.0452 REMARK 3 S21: -0.0355 S22: -0.0197 S23: -0.0743 REMARK 3 S31: -0.0077 S32: 0.0175 S33: -0.0089 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 984 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34680 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.563 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.60700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULPHATE, 10 MM COLBALT REMARK 280 CHLORIDE, 100 MM MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.49050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.05500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.43150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.05500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.49050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.43150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 134 O HOH B 301 2.13 REMARK 500 NH2 ARG B 67 O HOH B 302 2.15 REMARK 500 OE2 GLU A 83 OH TYR A 106 2.18 REMARK 500 O HOH B 346 O HOH B 359 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 445 O HOH B 327 2555 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 143 CG - CD - NE ANGL. DEV. = -16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 36.03 -84.51 REMARK 500 LEU A 86 48.51 -103.15 REMARK 500 PRO B 21 43.31 -84.14 REMARK 500 LEU B 86 59.60 -104.90 REMARK 500 ASP B 132 -166.41 -77.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 202 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 38 NE2 REMARK 620 2 HOH A 314 O 90.2 REMARK 620 3 HOH A 353 O 90.1 96.0 REMARK 620 4 HIS B 157 NE2 175.5 91.4 85.6 REMARK 620 5 HOH B 383 O 91.5 85.1 178.1 92.8 REMARK 620 6 HOH B 395 O 91.7 174.7 89.0 87.1 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 203 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 138 OE1 REMARK 620 2 HIS A 157 NE2 83.1 REMARK 620 3 HIS B 30 ND1 103.4 122.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 202 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 415 O REMARK 620 2 HOH A 416 O 95.3 REMARK 620 3 HIS B 38 NE2 92.2 171.1 REMARK 620 4 HOH B 322 O 176.0 81.5 91.2 REMARK 620 5 HOH B 357 O 91.9 92.8 91.8 86.0 REMARK 620 6 HOH B 361 O 86.9 84.9 90.7 95.0 177.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DHF A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DHF B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NNC RELATED DB: PDB DBREF 6NND A 1 159 UNP P9WNX1 DYR_MYCTU 3 161 DBREF 6NND B 1 159 UNP P9WNX1 DYR_MYCTU 3 161 SEQRES 1 A 159 MET VAL GLY LEU ILE TRP ALA GLN ALA THR SER GLY VAL SEQRES 2 A 159 ILE GLY ARG GLY GLY ASP ILE PRO TRP ARG LEU PRO GLU SEQRES 3 A 159 ASP GLN ALA HIS PHE ARG GLU ILE THR MET GLY HIS THR SEQRES 4 A 159 ILE VAL MET GLY ARG ARG THR TRP ASP SER LEU PRO ALA SEQRES 5 A 159 LYS VAL ARG PRO LEU PRO GLY ARG ARG ASN VAL VAL LEU SEQRES 6 A 159 SER ARG GLN ALA ASP PHE MET ALA SER GLY ALA GLU VAL SEQRES 7 A 159 VAL GLY SER LEU GLU GLU ALA LEU THR SER PRO GLU THR SEQRES 8 A 159 TRP VAL ILE GLY GLY GLY GLN VAL TYR ALA LEU ALA LEU SEQRES 9 A 159 PRO TYR ALA THR ARG CYS GLU VAL THR GLU VAL ASP ILE SEQRES 10 A 159 GLY LEU PRO ARG GLU ALA GLY ASP ALA LEU ALA PRO VAL SEQRES 11 A 159 LEU ASP GLU THR TRP ARG GLY GLU THR GLY GLU TRP ARG SEQRES 12 A 159 PHE SER ARG SER GLY LEU ARG TYR ARG LEU TYR SER TYR SEQRES 13 A 159 HIS ARG SER SEQRES 1 B 159 MET VAL GLY LEU ILE TRP ALA GLN ALA THR SER GLY VAL SEQRES 2 B 159 ILE GLY ARG GLY GLY ASP ILE PRO TRP ARG LEU PRO GLU SEQRES 3 B 159 ASP GLN ALA HIS PHE ARG GLU ILE THR MET GLY HIS THR SEQRES 4 B 159 ILE VAL MET GLY ARG ARG THR TRP ASP SER LEU PRO ALA SEQRES 5 B 159 LYS VAL ARG PRO LEU PRO GLY ARG ARG ASN VAL VAL LEU SEQRES 6 B 159 SER ARG GLN ALA ASP PHE MET ALA SER GLY ALA GLU VAL SEQRES 7 B 159 VAL GLY SER LEU GLU GLU ALA LEU THR SER PRO GLU THR SEQRES 8 B 159 TRP VAL ILE GLY GLY GLY GLN VAL TYR ALA LEU ALA LEU SEQRES 9 B 159 PRO TYR ALA THR ARG CYS GLU VAL THR GLU VAL ASP ILE SEQRES 10 B 159 GLY LEU PRO ARG GLU ALA GLY ASP ALA LEU ALA PRO VAL SEQRES 11 B 159 LEU ASP GLU THR TRP ARG GLY GLU THR GLY GLU TRP ARG SEQRES 12 B 159 PHE SER ARG SER GLY LEU ARG TYR ARG LEU TYR SER TYR SEQRES 13 B 159 HIS ARG SER HET NDP A 201 48 HET CO A 202 1 HET CO A 203 1 HET DHF A 204 32 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HET SO4 A 208 5 HET NDP B 201 48 HET CO B 202 1 HET DHF B 203 32 HET SO4 B 204 5 HET SO4 B 205 5 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM CO COBALT (II) ION HETNAM DHF DIHYDROFOLIC ACID HETNAM SO4 SULFATE ION FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 CO 3(CO 2+) FORMUL 6 DHF 2(C19 H21 N7 O6) FORMUL 7 SO4 6(O4 S 2-) FORMUL 16 HOH *316(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 PRO A 51 ARG A 55 5 5 HELIX 4 AA4 SER A 81 LEU A 86 5 6 HELIX 5 AA5 GLY A 96 LEU A 104 1 9 HELIX 6 AA6 PRO A 105 ALA A 107 5 3 HELIX 7 AA7 LEU B 24 MET B 36 1 13 HELIX 8 AA8 ARG B 44 LEU B 50 1 7 HELIX 9 AA9 PRO B 51 ARG B 55 5 5 HELIX 10 AB1 SER B 81 LEU B 86 1 6 HELIX 11 AB2 GLY B 96 LEU B 104 1 9 HELIX 12 AB3 PRO B 105 ALA B 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA1 8 THR A 91 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA1 8 VAL A 2 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N GLU A 138 O SER A 155 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA2 8 THR A 91 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA2 8 VAL A 2 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 SHEET 1 AA4 8 GLU B 77 VAL B 79 0 SHEET 2 AA4 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA4 8 THR B 39 GLY B 43 1 N MET B 42 O LEU B 65 SHEET 4 AA4 8 THR B 91 VAL B 93 1 O TRP B 92 N THR B 39 SHEET 5 AA4 8 VAL B 2 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA4 8 ARG B 109 VAL B 115 1 O VAL B 115 N GLN B 8 SHEET 7 AA4 8 ARG B 150 HIS B 157 -1 O TYR B 154 N VAL B 112 SHEET 8 AA4 8 ARG B 136 THR B 139 -1 N ARG B 136 O HIS B 157 SHEET 1 AA5 8 GLU B 77 VAL B 79 0 SHEET 2 AA5 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA5 8 THR B 39 GLY B 43 1 N MET B 42 O LEU B 65 SHEET 4 AA5 8 THR B 91 VAL B 93 1 O TRP B 92 N THR B 39 SHEET 5 AA5 8 VAL B 2 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA5 8 ARG B 109 VAL B 115 1 O VAL B 115 N GLN B 8 SHEET 7 AA5 8 ARG B 150 HIS B 157 -1 O TYR B 154 N VAL B 112 SHEET 8 AA5 8 ARG B 143 PHE B 144 -1 N ARG B 143 O TYR B 151 SHEET 1 AA6 2 VAL B 13 GLY B 15 0 SHEET 2 AA6 2 ALA B 126 LEU B 127 -1 O ALA B 126 N ILE B 14 LINK NE2 HIS A 38 CO CO A 202 1555 1555 2.14 LINK OE1 GLU A 138 CO CO A 203 1555 1555 2.12 LINK NE2 HIS A 157 CO CO A 203 1555 1555 2.18 LINK CO CO A 202 O HOH A 314 1555 1555 2.12 LINK CO CO A 202 O HOH A 353 1555 1555 2.17 LINK CO CO A 202 NE2 HIS B 157 1555 1555 2.12 LINK CO CO A 202 O HOH B 383 1555 1555 2.10 LINK CO CO A 202 O HOH B 395 1555 1555 2.14 LINK CO CO A 203 ND1 HIS B 30 1555 1555 1.98 LINK O HOH A 415 CO CO B 202 1555 1555 1.98 LINK O HOH A 416 CO CO B 202 1555 1555 1.84 LINK NE2 HIS B 38 CO CO B 202 1555 1555 2.12 LINK CO CO B 202 O HOH B 322 1555 1555 2.08 LINK CO CO B 202 O HOH B 357 1555 1555 2.12 LINK CO CO B 202 O HOH B 361 1555 1555 2.16 CISPEP 1 ARG A 55 PRO A 56 0 2.73 CISPEP 2 GLY A 95 GLY A 96 0 5.79 CISPEP 3 ARG B 55 PRO B 56 0 4.65 CISPEP 4 GLY B 95 GLY B 96 0 5.44 SITE 1 AC1 34 TRP A 6 ALA A 7 ILE A 14 GLY A 15 SITE 2 AC1 34 ARG A 16 GLY A 18 ASP A 19 ILE A 20 SITE 3 AC1 34 GLY A 43 ARG A 44 ARG A 45 THR A 46 SITE 4 AC1 34 LEU A 65 SER A 66 ARG A 67 GLY A 80 SITE 5 AC1 34 ILE A 94 GLY A 96 GLY A 97 GLN A 98 SITE 6 AC1 34 VAL A 99 TYR A 100 LEU A 102 DHF A 204 SITE 7 AC1 34 HOH A 324 HOH A 332 HOH A 333 HOH A 339 SITE 8 AC1 34 HOH A 340 HOH A 356 HOH A 365 HOH A 367 SITE 9 AC1 34 HOH A 410 HOH A 411 SITE 1 AC2 6 HIS A 38 HOH A 314 HOH A 353 HIS B 157 SITE 2 AC2 6 HOH B 383 HOH B 395 SITE 1 AC3 3 GLU A 138 HIS A 157 HIS B 30 SITE 1 AC4 19 TRP A 6 ALA A 7 ASP A 27 GLN A 28 SITE 2 AC4 19 ALA A 29 PHE A 31 ARG A 32 LEU A 50 SITE 3 AC4 19 VAL A 54 LEU A 57 ARG A 60 ILE A 94 SITE 4 AC4 19 THR A 113 NDP A 201 HOH A 308 HOH A 309 SITE 5 AC4 19 HOH A 323 HOH A 338 HOH A 379 SITE 1 AC5 8 ARG A 23 PRO A 51 HOH A 330 HOH A 352 SITE 2 AC5 8 ARG B 32 MET B 36 PRO B 58 HOH B 334 SITE 1 AC6 3 ARG A 44 ARG A 45 HOH A 307 SITE 1 AC7 4 ARG A 136 GLU B 26 ALA B 29 ARG B 146 SITE 1 AC8 3 ARG A 32 MET A 36 ARG B 23 SITE 1 AC9 35 TRP B 6 ALA B 7 ILE B 14 GLY B 15 SITE 2 AC9 35 ARG B 16 GLY B 18 ASP B 19 ILE B 20 SITE 3 AC9 35 GLY B 43 ARG B 44 ARG B 45 THR B 46 SITE 4 AC9 35 SER B 49 LEU B 65 SER B 66 ARG B 67 SITE 5 AC9 35 GLN B 68 GLY B 80 ILE B 94 GLY B 96 SITE 6 AC9 35 GLY B 97 GLN B 98 VAL B 99 TYR B 100 SITE 7 AC9 35 LEU B 102 DHF B 203 HOH B 302 HOH B 311 SITE 8 AC9 35 HOH B 318 HOH B 332 HOH B 358 HOH B 364 SITE 9 AC9 35 HOH B 376 HOH B 390 HOH B 405 SITE 1 AD1 6 HOH A 415 HOH A 416 HIS B 38 HOH B 322 SITE 2 AD1 6 HOH B 357 HOH B 361 SITE 1 AD2 18 ILE B 5 TRP B 6 ALA B 7 ASP B 27 SITE 2 AD2 18 GLN B 28 PHE B 31 ARG B 32 LEU B 50 SITE 3 AD2 18 VAL B 54 LEU B 57 ARG B 60 ILE B 94 SITE 4 AD2 18 TYR B 100 NDP B 201 HOH B 305 HOH B 330 SITE 5 AD2 18 HOH B 334 HOH B 341 SITE 1 AD3 2 ARG B 152 HOH B 308 SITE 1 AD4 3 ARG B 44 ARG B 45 HOH B 402 CRYST1 60.981 70.863 72.110 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016399 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013868 0.00000 CONECT 295 2539 CONECT 1052 2540 CONECT 1226 2540 CONECT 1469 2540 CONECT 1540 2641 CONECT 2471 2539 CONECT 2491 2492 2493 2494 2513 CONECT 2492 2491 CONECT 2493 2491 CONECT 2494 2491 2495 CONECT 2495 2494 2496 CONECT 2496 2495 2497 2498 CONECT 2497 2496 2502 CONECT 2498 2496 2499 2500 CONECT 2499 2498 CONECT 2500 2498 2501 2502 CONECT 2501 2500 2535 CONECT 2502 2497 2500 2503 CONECT 2503 2502 2504 2512 CONECT 2504 2503 2505 CONECT 2505 2504 2506 CONECT 2506 2505 2507 2512 CONECT 2507 2506 2508 2509 CONECT 2508 2507 CONECT 2509 2507 2510 CONECT 2510 2509 2511 CONECT 2511 2510 2512 CONECT 2512 2503 2506 2511 CONECT 2513 2491 2514 CONECT 2514 2513 2515 2516 2517 CONECT 2515 2514 CONECT 2516 2514 CONECT 2517 2514 2518 CONECT 2518 2517 2519 CONECT 2519 2518 2520 2521 CONECT 2520 2519 2525 CONECT 2521 2519 2522 2523 CONECT 2522 2521 CONECT 2523 2521 2524 2525 CONECT 2524 2523 CONECT 2525 2520 2523 2526 CONECT 2526 2525 2527 2534 CONECT 2527 2526 2528 CONECT 2528 2527 2529 2532 CONECT 2529 2528 2530 2531 CONECT 2530 2529 CONECT 2531 2529 CONECT 2532 2528 2533 CONECT 2533 2532 2534 CONECT 2534 2526 2533 CONECT 2535 2501 2536 2537 2538 CONECT 2536 2535 CONECT 2537 2535 CONECT 2538 2535 CONECT 2539 295 2471 2697 2736 CONECT 2539 2930 2942 CONECT 2540 1052 1226 1469 CONECT 2541 2542 2552 CONECT 2542 2541 2543 2544 CONECT 2543 2542 CONECT 2544 2542 2545 CONECT 2545 2544 2546 2547 CONECT 2546 2545 CONECT 2547 2545 2548 2552 CONECT 2548 2547 2549 CONECT 2549 2548 2550 2553 CONECT 2550 2549 2551 CONECT 2551 2550 2552 CONECT 2552 2541 2547 2551 CONECT 2553 2549 2554 CONECT 2554 2553 2558 CONECT 2555 2556 2560 2561 CONECT 2556 2555 2557 CONECT 2557 2556 2558 CONECT 2558 2554 2557 2559 CONECT 2559 2558 2560 CONECT 2560 2555 2559 CONECT 2561 2555 2562 2563 CONECT 2562 2561 CONECT 2563 2561 2564 CONECT 2564 2563 2565 2570 CONECT 2565 2564 2566 CONECT 2566 2565 2567 CONECT 2567 2566 2568 2569 CONECT 2568 2567 CONECT 2569 2567 CONECT 2570 2564 2571 2572 CONECT 2571 2570 CONECT 2572 2570 CONECT 2573 2574 2575 2576 2577 CONECT 2574 2573 CONECT 2575 2573 CONECT 2576 2573 CONECT 2577 2573 CONECT 2578 2579 2580 2581 2582 CONECT 2579 2578 CONECT 2580 2578 CONECT 2581 2578 CONECT 2582 2578 CONECT 2583 2584 2585 2586 2587 CONECT 2584 2583 CONECT 2585 2583 CONECT 2586 2583 CONECT 2587 2583 CONECT 2588 2589 2590 2591 2592 CONECT 2589 2588 CONECT 2590 2588 CONECT 2591 2588 CONECT 2592 2588 CONECT 2593 2594 2595 2596 2615 CONECT 2594 2593 CONECT 2595 2593 CONECT 2596 2593 2597 CONECT 2597 2596 2598 CONECT 2598 2597 2599 2600 CONECT 2599 2598 2604 CONECT 2600 2598 2601 2602 CONECT 2601 2600 CONECT 2602 2600 2603 2604 CONECT 2603 2602 2637 CONECT 2604 2599 2602 2605 CONECT 2605 2604 2606 2614 CONECT 2606 2605 2607 CONECT 2607 2606 2608 CONECT 2608 2607 2609 2614 CONECT 2609 2608 2610 2611 CONECT 2610 2609 CONECT 2611 2609 2612 CONECT 2612 2611 2613 CONECT 2613 2612 2614 CONECT 2614 2605 2608 2613 CONECT 2615 2593 2616 CONECT 2616 2615 2617 2618 2619 CONECT 2617 2616 CONECT 2618 2616 CONECT 2619 2616 2620 CONECT 2620 2619 2621 CONECT 2621 2620 2622 2623 CONECT 2622 2621 2627 CONECT 2623 2621 2624 2625 CONECT 2624 2623 CONECT 2625 2623 2626 2627 CONECT 2626 2625 CONECT 2627 2622 2625 2628 CONECT 2628 2627 2629 2636 CONECT 2629 2628 2630 CONECT 2630 2629 2631 2634 CONECT 2631 2630 2632 2633 CONECT 2632 2631 CONECT 2633 2631 CONECT 2634 2630 2635 CONECT 2635 2634 2636 CONECT 2636 2628 2635 CONECT 2637 2603 2638 2639 2640 CONECT 2638 2637 CONECT 2639 2637 CONECT 2640 2637 CONECT 2641 1540 2798 2799 2869 CONECT 2641 2904 2908 CONECT 2642 2643 2653 CONECT 2643 2642 2644 2645 CONECT 2644 2643 CONECT 2645 2643 2646 CONECT 2646 2645 2647 2648 CONECT 2647 2646 CONECT 2648 2646 2649 2653 CONECT 2649 2648 2650 CONECT 2650 2649 2651 2654 CONECT 2651 2650 2652 CONECT 2652 2651 2653 CONECT 2653 2642 2648 2652 CONECT 2654 2650 2655 CONECT 2655 2654 2659 CONECT 2656 2657 2661 2662 CONECT 2657 2656 2658 CONECT 2658 2657 2659 CONECT 2659 2655 2658 2660 CONECT 2660 2659 2661 CONECT 2661 2656 2660 CONECT 2662 2656 2663 2664 CONECT 2663 2662 CONECT 2664 2662 2665 CONECT 2665 2664 2666 2671 CONECT 2666 2665 2667 CONECT 2667 2666 2668 CONECT 2668 2667 2669 2670 CONECT 2669 2668 CONECT 2670 2668 CONECT 2671 2665 2672 2673 CONECT 2672 2671 CONECT 2673 2671 CONECT 2674 2675 2676 2677 2678 CONECT 2675 2674 CONECT 2676 2674 CONECT 2677 2674 CONECT 2678 2674 CONECT 2679 2680 2681 2682 2683 CONECT 2680 2679 CONECT 2681 2679 CONECT 2682 2679 CONECT 2683 2679 CONECT 2697 2539 CONECT 2736 2539 CONECT 2798 2641 CONECT 2799 2641 CONECT 2869 2641 CONECT 2904 2641 CONECT 2908 2641 CONECT 2930 2539 CONECT 2942 2539 MASTER 402 0 13 12 36 0 40 6 2997 2 210 26 END