HEADER OXIDOREDUCTASE 14-JAN-19 6NNE TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS IN COMPLEX WITH DIAVERDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25177 / SOURCE 3 H37RA); SOURCE 4 ORGANISM_TAXID: 419947; SOURCE 5 STRAIN: ATCC 25177 / H37RA; SOURCE 6 GENE: DFRA, MRA_2788; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ANTIFOLATE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.RIBEIRO,S.M.CHAVEZ-PACHECO,M.V.B.DIAS REVDAT 3 13-MAR-24 6NNE 1 LINK REVDAT 2 13-NOV-19 6NNE 1 JRNL REVDAT 1 17-JUL-19 6NNE 0 JRNL AUTH J.A.RIBEIRO,S.M.CHAVEZ-PACHECO,G.S.DE OLIVEIRA,C.D.S.SILVA, JRNL AUTH 2 J.H.P.GIUDICE,G.A.LIBREROS-ZUNIGA,M.V.B.DIAS JRNL TITL CRYSTAL STRUCTURES OF THE CLOSED FORM OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS DIHYDROFOLATE REDUCTASE IN COMPLEX WITH JRNL TITL 3 DIHYDROFOLATE AND ANTIFOLATES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 682 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31282477 JRNL DOI 10.1107/S205979831900901X REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 2112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3579 - 3.9311 1.00 2959 157 0.1592 0.2089 REMARK 3 2 3.9311 - 3.1210 1.00 2854 135 0.1640 0.2067 REMARK 3 3 3.1210 - 2.7268 1.00 2809 133 0.1807 0.1945 REMARK 3 4 2.7268 - 2.4775 1.00 2790 123 0.1869 0.2524 REMARK 3 5 2.4775 - 2.3000 1.00 2766 155 0.1823 0.2213 REMARK 3 6 2.3000 - 2.1644 1.00 2795 106 0.1793 0.2288 REMARK 3 7 2.1644 - 2.0561 1.00 2738 156 0.1782 0.2073 REMARK 3 8 2.0561 - 1.9666 1.00 2727 176 0.1843 0.2150 REMARK 3 9 1.9666 - 1.8909 1.00 2729 159 0.1859 0.2390 REMARK 3 10 1.8909 - 1.8256 1.00 2743 134 0.1918 0.2225 REMARK 3 11 1.8256 - 1.7686 1.00 2761 113 0.1906 0.2034 REMARK 3 12 1.7686 - 1.7180 1.00 2743 139 0.2007 0.2452 REMARK 3 13 1.7180 - 1.6728 1.00 2735 149 0.2130 0.2797 REMARK 3 14 1.6728 - 1.6320 1.00 2724 136 0.2295 0.2571 REMARK 3 15 1.6320 - 1.5949 0.97 2667 141 0.2627 0.3133 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 23.0109 0.1781 17.7877 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.1374 REMARK 3 T33: 0.1288 T12: 0.0002 REMARK 3 T13: -0.0253 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.5157 L22: 0.5214 REMARK 3 L33: 0.3599 L12: -0.5637 REMARK 3 L13: -0.5552 L23: 0.0120 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: -0.0115 S13: 0.0241 REMARK 3 S21: 0.0042 S22: -0.0023 S23: -0.0510 REMARK 3 S31: 0.0121 S32: 0.0387 S33: 0.0303 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NNE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 46.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.94300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULPHATE, 10 MM COBALT REMARK 280 CHLORIDE, 100 MM MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.83150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.19050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.08750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.19050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.83150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.08750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CO CO B 201 O HOH A 399 1.48 REMARK 500 O HOH B 327 O HOH B 393 1.86 REMARK 500 OG SER A 88 O HOH A 301 2.03 REMARK 500 O HOH B 355 O HOH B 371 2.10 REMARK 500 OE2 GLU B 84 O HOH B 301 2.11 REMARK 500 O ALA B 85 O HOH B 302 2.17 REMARK 500 O HOH A 353 O HOH B 332 2.17 REMARK 500 O4 SO4 B 204 O HOH B 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 312 O HOH B 408 3655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 72 CG - SD - CE ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 34.16 -86.95 REMARK 500 LEU A 86 51.80 -104.75 REMARK 500 PRO B 21 44.86 -87.80 REMARK 500 THR B 87 3.68 -69.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 411 DISTANCE = 6.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 201 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 38 NE2 REMARK 620 2 HOH A 317 O 88.0 REMARK 620 3 HOH A 358 O 88.5 95.3 REMARK 620 4 HOH A 363 O 93.7 87.2 176.7 REMARK 620 5 HIS B 157 NE2 173.0 91.9 84.5 93.3 REMARK 620 6 HOH B 362 O 94.4 173.1 91.3 86.2 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 201 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 38 NE2 REMARK 620 2 HOH B 313 O 94.8 REMARK 620 3 HOH B 328 O 88.6 94.0 REMARK 620 4 HOH B 368 O 97.9 90.5 171.8 REMARK 620 5 HOH B 372 O 92.1 171.4 91.3 83.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KUP A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KUP B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 DBREF 6NNE A 1 159 UNP A5U6B6 A5U6B6_MYCTA 1 159 DBREF 6NNE B 1 159 UNP A5U6B6 A5U6B6_MYCTA 1 159 SEQRES 1 A 159 MET VAL GLY LEU ILE TRP ALA GLN ALA THR SER GLY VAL SEQRES 2 A 159 ILE GLY ARG GLY GLY ASP ILE PRO TRP ARG LEU PRO GLU SEQRES 3 A 159 ASP GLN ALA HIS PHE ARG GLU ILE THR MET GLY HIS THR SEQRES 4 A 159 ILE VAL MET GLY ARG ARG THR TRP ASP SER LEU PRO ALA SEQRES 5 A 159 LYS VAL ARG PRO LEU PRO GLY ARG ARG ASN VAL VAL LEU SEQRES 6 A 159 SER ARG GLN ALA ASP PHE MET ALA SER GLY ALA GLU VAL SEQRES 7 A 159 VAL GLY SER LEU GLU GLU ALA LEU THR SER PRO GLU THR SEQRES 8 A 159 TRP VAL ILE GLY GLY GLY GLN VAL TYR ALA LEU ALA LEU SEQRES 9 A 159 PRO TYR ALA THR ARG CYS GLU VAL THR GLU VAL ASP ILE SEQRES 10 A 159 GLY LEU PRO ARG GLU ALA GLY ASP ALA LEU ALA PRO VAL SEQRES 11 A 159 LEU ASP GLU THR TRP ARG GLY GLU THR GLY GLU TRP ARG SEQRES 12 A 159 PHE SER ARG SER GLY LEU ARG TYR ARG LEU TYR SER TYR SEQRES 13 A 159 HIS ARG SER SEQRES 1 B 159 MET VAL GLY LEU ILE TRP ALA GLN ALA THR SER GLY VAL SEQRES 2 B 159 ILE GLY ARG GLY GLY ASP ILE PRO TRP ARG LEU PRO GLU SEQRES 3 B 159 ASP GLN ALA HIS PHE ARG GLU ILE THR MET GLY HIS THR SEQRES 4 B 159 ILE VAL MET GLY ARG ARG THR TRP ASP SER LEU PRO ALA SEQRES 5 B 159 LYS VAL ARG PRO LEU PRO GLY ARG ARG ASN VAL VAL LEU SEQRES 6 B 159 SER ARG GLN ALA ASP PHE MET ALA SER GLY ALA GLU VAL SEQRES 7 B 159 VAL GLY SER LEU GLU GLU ALA LEU THR SER PRO GLU THR SEQRES 8 B 159 TRP VAL ILE GLY GLY GLY GLN VAL TYR ALA LEU ALA LEU SEQRES 9 B 159 PRO TYR ALA THR ARG CYS GLU VAL THR GLU VAL ASP ILE SEQRES 10 B 159 GLY LEU PRO ARG GLU ALA GLY ASP ALA LEU ALA PRO VAL SEQRES 11 B 159 LEU ASP GLU THR TRP ARG GLY GLU THR GLY GLU TRP ARG SEQRES 12 B 159 PHE SER ARG SER GLY LEU ARG TYR ARG LEU TYR SER TYR SEQRES 13 B 159 HIS ARG SER HET CO A 201 1 HET NDP A 202 48 HET KUP A 203 19 HET SO4 A 204 5 HET SO4 A 205 5 HET CO B 201 1 HET NDP B 202 48 HET KUP B 203 19 HET SO4 B 204 5 HET SO4 B 205 5 HETNAM CO COBALT (II) ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM KUP 5-[(3,4-DIMETHOXYPHENYL)METHYL]PYRIMIDINE-2,4-DIAMINE HETNAM SO4 SULFATE ION FORMUL 3 CO 2(CO 2+) FORMUL 4 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 KUP 2(C13 H16 N4 O2) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *239(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 SER A 49 1 6 HELIX 3 AA3 PRO A 51 ARG A 55 5 5 HELIX 4 AA4 LEU A 82 LEU A 86 5 5 HELIX 5 AA5 GLY A 96 LEU A 104 1 9 HELIX 6 AA6 PRO A 105 ALA A 107 5 3 HELIX 7 AA7 LEU B 24 MET B 36 1 13 HELIX 8 AA8 ARG B 44 LEU B 50 1 7 HELIX 9 AA9 SER B 81 LEU B 86 1 6 HELIX 10 AB1 GLY B 96 LEU B 104 1 9 HELIX 11 AB2 PRO B 105 ALA B 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA1 8 THR A 91 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA1 8 VAL A 2 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N ARG A 136 O HIS A 157 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA2 8 THR A 91 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA2 8 VAL A 2 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 SHEET 1 AA4 8 GLU B 77 VAL B 79 0 SHEET 2 AA4 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA4 8 THR B 39 GLY B 43 1 N MET B 42 O LEU B 65 SHEET 4 AA4 8 THR B 91 VAL B 93 1 O TRP B 92 N THR B 39 SHEET 5 AA4 8 VAL B 2 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA4 8 ARG B 109 VAL B 115 1 O VAL B 115 N GLN B 8 SHEET 7 AA4 8 ARG B 150 HIS B 157 -1 O TYR B 156 N CYS B 110 SHEET 8 AA4 8 ARG B 136 THR B 139 -1 N ARG B 136 O HIS B 157 SHEET 1 AA5 8 GLU B 77 VAL B 79 0 SHEET 2 AA5 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA5 8 THR B 39 GLY B 43 1 N MET B 42 O LEU B 65 SHEET 4 AA5 8 THR B 91 VAL B 93 1 O TRP B 92 N THR B 39 SHEET 5 AA5 8 VAL B 2 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA5 8 ARG B 109 VAL B 115 1 O VAL B 115 N GLN B 8 SHEET 7 AA5 8 ARG B 150 HIS B 157 -1 O TYR B 156 N CYS B 110 SHEET 8 AA5 8 ARG B 143 PHE B 144 -1 N ARG B 143 O TYR B 151 SHEET 1 AA6 2 VAL B 13 GLY B 15 0 SHEET 2 AA6 2 ALA B 126 LEU B 127 -1 O ALA B 126 N ILE B 14 LINK NE2 HIS A 38 CO CO A 201 1555 1555 2.15 LINK CO CO A 201 O HOH A 317 1555 1555 2.16 LINK CO CO A 201 O HOH A 358 1555 1555 2.12 LINK CO CO A 201 O HOH A 363 1555 1555 2.10 LINK CO CO A 201 NE2 HIS B 157 1555 1555 2.10 LINK CO CO A 201 O HOH B 362 1555 1555 2.09 LINK NE2 HIS B 38 CO CO B 201 1555 1555 2.06 LINK CO CO B 201 O HOH B 313 1555 1555 2.10 LINK CO CO B 201 O HOH B 328 1555 1555 2.23 LINK CO CO B 201 O HOH B 368 1555 1555 2.15 LINK CO CO B 201 O HOH B 372 1555 1555 2.03 CISPEP 1 ARG A 55 PRO A 56 0 -7.64 CISPEP 2 GLY A 95 GLY A 96 0 -0.22 CISPEP 3 ARG B 55 PRO B 56 0 -11.14 CISPEP 4 GLY B 95 GLY B 96 0 -2.37 SITE 1 AC1 6 HIS A 38 HOH A 317 HOH A 358 HOH A 363 SITE 2 AC1 6 HIS B 157 HOH B 362 SITE 1 AC2 32 TRP A 6 ALA A 7 ILE A 14 GLY A 15 SITE 2 AC2 32 GLY A 18 ASP A 19 ILE A 20 GLY A 43 SITE 3 AC2 32 ARG A 44 ARG A 45 THR A 46 LEU A 65 SITE 4 AC2 32 SER A 66 ARG A 67 GLN A 68 GLY A 80 SITE 5 AC2 32 ILE A 94 GLY A 96 GLY A 97 GLN A 98 SITE 6 AC2 32 VAL A 99 TYR A 100 LEU A 102 KUP A 203 SITE 7 AC2 32 HOH A 316 HOH A 322 HOH A 327 HOH A 329 SITE 8 AC2 32 HOH A 336 HOH A 342 HOH A 355 HOH A 390 SITE 1 AC3 11 ILE A 5 TRP A 6 ILE A 20 ARG A 23 SITE 2 AC3 11 ASP A 27 GLN A 28 PHE A 31 ILE A 94 SITE 3 AC3 11 TYR A 100 NDP A 202 HOH A 335 SITE 1 AC4 2 ARG A 44 ARG A 45 SITE 1 AC5 4 ARG A 23 ARG B 32 MET B 36 PRO B 58 SITE 1 AC6 6 HOH A 399 HIS B 38 HOH B 313 HOH B 328 SITE 2 AC6 6 HOH B 368 HOH B 372 SITE 1 AC7 32 TRP B 6 ALA B 7 ILE B 14 GLY B 15 SITE 2 AC7 32 ARG B 16 GLY B 18 ASP B 19 ILE B 20 SITE 3 AC7 32 GLY B 43 ARG B 44 ARG B 45 THR B 46 SITE 4 AC7 32 LEU B 65 SER B 66 ARG B 67 GLN B 68 SITE 5 AC7 32 GLY B 80 ILE B 94 GLY B 96 GLY B 97 SITE 6 AC7 32 GLN B 98 VAL B 99 TYR B 100 LEU B 102 SITE 7 AC7 32 KUP B 203 HOH B 316 HOH B 324 HOH B 331 SITE 8 AC7 32 HOH B 334 HOH B 338 HOH B 363 HOH B 381 SITE 1 AC8 9 ILE B 5 TRP B 6 ASP B 27 GLN B 28 SITE 2 AC8 9 PHE B 31 LEU B 50 ILE B 94 TYR B 100 SITE 3 AC8 9 NDP B 202 SITE 1 AC9 3 GLU B 26 ALA B 29 HOH B 303 SITE 1 AD1 2 ARG B 44 ARG B 45 CRYST1 61.663 72.175 72.381 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016217 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013816 0.00000