HEADER IMMUNE SYSTEM 14-JAN-19 6NNF TITLE CRYSTAL STRUCTURE OF HIV-1 BG505 SOSIP.664 PREFUSION ENV TRIMER BOUND TITLE 2 TO VRC01 FR3-03 SCFV IN COMPLEX WITH CRYSTALLIZATION CHAPERONES TITLE 3 3H109L FAB AND 35O22 SCFV AT 3.5 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP41; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: GP41; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 35O22 SCFV HEAVY CHAIN; COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 35O22 SCFV LIGHT CHAIN; COMPND 14 CHAIN: E; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: ENVELOPE GLYCOPROTEIN GP120; COMPND 18 CHAIN: G; COMPND 19 FRAGMENT: GP120; COMPND 20 ENGINEERED: YES; COMPND 21 MUTATION: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: 3H109L FAB HEAVY CHAIN; COMPND 24 CHAIN: H; COMPND 25 ENGINEERED: YES; COMPND 26 MOL_ID: 6; COMPND 27 MOLECULE: 3H109L FAB LIGHT CHAIN; COMPND 28 CHAIN: L; COMPND 29 ENGINEERED: YES; COMPND 30 MUTATION: YES; COMPND 31 MOL_ID: 7; COMPND 32 MOLECULE: VRC01 FR3-03 HEAVY CHAIN; COMPND 33 CHAIN: U; COMPND 34 ENGINEERED: YES; COMPND 35 MOL_ID: 8; COMPND 36 MOLECULE: VRC01 FR3-03 LIGHT CHAIN; COMPND 37 CHAIN: V; COMPND 38 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: ENV; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 24 ORGANISM_TAXID: 11676; SOURCE 25 GENE: ENV; SOURCE 26 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 27 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 29 MOL_ID: 5; SOURCE 30 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 31 ORGANISM_COMMON: HUMAN; SOURCE 32 ORGANISM_TAXID: 9606; SOURCE 33 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 34 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 35 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 36 MOL_ID: 6; SOURCE 37 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 38 ORGANISM_COMMON: HUMAN; SOURCE 39 ORGANISM_TAXID: 9606; SOURCE 40 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 41 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 42 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 43 MOL_ID: 7; SOURCE 44 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 45 ORGANISM_COMMON: HUMAN; SOURCE 46 ORGANISM_TAXID: 9606; SOURCE 47 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 48 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 49 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 50 MOL_ID: 8; SOURCE 51 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 52 ORGANISM_COMMON: HUMAN; SOURCE 53 ORGANISM_TAXID: 9606; SOURCE 54 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 55 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 56 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HIV-1 ENVELOPE PREFUSION TRIMER, CD4-BINDING SITE ANTIBODIES, KEYWDS 2 CHIMERIC ANTIBODIES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.-T.LAI,P.D.KWONG REVDAT 3 11-OCT-23 6NNF 1 HETSYN LINK REVDAT 2 29-JUL-20 6NNF 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 27-FEB-19 6NNF 0 JRNL AUTH Q.LIU,Y.T.LAI,P.ZHANG,M.K.LOUDER,A.PEGU,R.RAWI,M.ASOKAN, JRNL AUTH 2 X.CHEN,C.H.SHEN,G.Y.CHUANG,E.S.YANG,H.MIAO,Y.WANG,A.S.FAUCI, JRNL AUTH 3 P.D.KWONG,J.R.MASCOLA,P.LUSSO JRNL TITL IMPROVEMENT OF ANTIBODY FUNCTIONALITY BY STRUCTURE-GUIDED JRNL TITL 2 PARATOPE ENGRAFTMENT. JRNL REF NAT COMMUN V. 10 721 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30760721 JRNL DOI 10.1038/S41467-019-08658-4 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 34.8 REMARK 3 NUMBER OF REFLECTIONS : 27126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8424 - 5.9448 0.93 6942 366 0.2440 0.2463 REMARK 3 2 5.9448 - 4.7205 0.94 7011 365 0.2420 0.2913 REMARK 3 3 4.7205 - 4.1243 0.72 5326 295 0.2255 0.2999 REMARK 3 4 4.1243 - 3.7475 0.38 2778 146 0.2333 0.3539 REMARK 3 5 3.7475 - 3.4790 0.21 1581 91 0.2530 0.3647 REMARK 3 6 3.4790 - 3.2740 0.14 1002 53 0.2789 0.4239 REMARK 3 7 3.2740 - 3.1101 0.08 576 33 0.3202 0.4295 REMARK 3 8 3.1101 - 2.9747 0.05 349 22 0.3329 0.5450 REMARK 3 9 2.9747 - 2.8602 0.02 134 7 0.3645 0.3597 REMARK 3 10 2.8602 - 2.7615 0.01 47 2 0.4211 0.2046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 AFTER DATA WAS COLLECTED AND PROCESSED, UCLA ANISOTROPY SERVER WAS REMARK 3 USED TO PERFORM ELLIPTICAL TRUNCATION TO DETERMINE THE DIFFRACTION REMARK 3 LIMITS ALONG THREE PRINCIPLE DIRECTIONS. TO ACCOUNT FOR THE LOW REMARK 3 COMPLETENESS DUE TO THE HIGH ANISOTROPY, AUTHORS CALCULATED AN " REMARK 3 EFFECTIVE RESOLUTION" BY THE FOLLOWING FORMULA: EFFECTIVE REMARK 3 RESOLUTION = HIGHEST RESOLUTION / (OVERALL COMPLETENESS)^(1/3) REMARK 3 NOTE: HIGHEST RESOLUTION WAS DETERMINED BY UCLA ANISOTROPY SERVER. REMARK 4 REMARK 4 6NNF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238985. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36136 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 40.7 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.88200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TVP, 4LST REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 72 MM IMIDAZOLE PH 6.5, 72 MM, REMARK 280 EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 157.59500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 157.59500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 157.59500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E, G, H, L, U, V, A, C, REMARK 350 AND CHAINS: F, I, J, K, M, N, O, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 65.43500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -113.33674 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 130.87000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 512 REMARK 465 VAL B 513 REMARK 465 GLY B 514 REMARK 465 ILE B 515 REMARK 465 GLY B 516 REMARK 465 GLN B 550 REMARK 465 GLN B 551 REMARK 465 GLN B 552 REMARK 465 SER B 553 REMARK 465 ASN B 554 REMARK 465 LEU B 555 REMARK 465 LEU B 556 REMARK 465 ARG B 557 REMARK 465 ALA B 558 REMARK 465 PRO B 559 REMARK 465 GLU B 560 REMARK 465 ALA B 561 REMARK 465 GLN B 562 REMARK 465 GLN B 563 REMARK 465 HIS B 564 REMARK 465 LEU B 565 REMARK 465 LEU B 566 REMARK 465 ASP B 664 REMARK 465 VAL D 111 REMARK 465 SER D 112 REMARK 465 SER D 113 REMARK 465 ALA D 114 REMARK 465 SER D 115 REMARK 465 THR D 116 REMARK 465 GLY D 117 REMARK 465 GLY D 118 REMARK 465 GLY D 119 REMARK 465 GLY D 120 REMARK 465 SER D 121 REMARK 465 GLY D 122 REMARK 465 GLY D 123 REMARK 465 GLY D 124 REMARK 465 GLY D 125 REMARK 465 SER D 126 REMARK 465 GLY D 127 REMARK 465 GLY D 128 REMARK 465 GLY D 129 REMARK 465 GLY D 130 REMARK 465 SER D 131 REMARK 465 GLY D 132 REMARK 465 GLY D 133 REMARK 465 GLY D 134 REMARK 465 GLY D 135 REMARK 465 GLN E 108 REMARK 465 SER E 109 REMARK 465 GLY E 110 REMARK 465 GLY E 111 REMARK 465 LEU E 112 REMARK 465 VAL E 113 REMARK 465 PRO E 114 REMARK 465 ARG E 115 REMARK 465 GLY E 116 REMARK 465 SER E 117 REMARK 465 HIS E 118 REMARK 465 HIS E 119 REMARK 465 HIS E 120 REMARK 465 HIS E 121 REMARK 465 HIS E 122 REMARK 465 HIS E 123 REMARK 465 HIS E 124 REMARK 465 HIS E 125 REMARK 465 ALA G 31 REMARK 465 ALA G 58 REMARK 465 LYS G 59 REMARK 465 ALA G 60 REMARK 465 TYR G 61 REMARK 465 GLU G 62 REMARK 465 THR G 63 REMARK 465 GLU G 64 REMARK 465 LYS G 65 REMARK 465 HIS G 66 REMARK 465 ILE G 146 REMARK 465 THR G 147 REMARK 465 ASP G 148 REMARK 465 ASP G 149 REMARK 465 MET G 150 REMARK 465 GLU G 185A REMARK 465 ASN G 185B REMARK 465 GLN G 185C REMARK 465 GLY G 185D REMARK 465 ASN G 185E REMARK 465 ARG G 185F REMARK 465 SER G 185G REMARK 465 ASN G 185H REMARK 465 ASN G 185I REMARK 465 SER G 185J REMARK 465 ASN G 185K REMARK 465 ASN G 399 REMARK 465 THR G 400 REMARK 465 SER G 401 REMARK 465 VAL G 402 REMARK 465 GLN G 403 REMARK 465 GLY G 404 REMARK 465 SER G 405 REMARK 465 ASN G 406 REMARK 465 SER G 407 REMARK 465 THR G 408 REMARK 465 GLY G 409 REMARK 465 SER G 410 REMARK 465 GLY G 458 REMARK 465 GLY G 459 REMARK 465 SER G 460 REMARK 465 THR G 461 REMARK 465 VAL G 506 REMARK 465 GLY G 507 REMARK 465 ARG G 508 REMARK 465 ARG G 509 REMARK 465 ARG G 510 REMARK 465 ARG G 511 REMARK 465 ARG G 512 REMARK 465 ARG G 513 REMARK 465 LYS H 127 REMARK 465 SER H 128 REMARK 465 THR H 129 REMARK 465 SER H 130 REMARK 465 GLY H 131 REMARK 465 LYS H 212 REMARK 465 SER H 213 REMARK 465 CYS H 214 REMARK 465 ASP H 215 REMARK 465 LYS H 216 REMARK 465 GLY H 217 REMARK 465 LEU H 218 REMARK 465 GLU H 219 REMARK 465 VAL H 220 REMARK 465 LEU H 221 REMARK 465 PHE H 222 REMARK 465 GLN H 223 REMARK 465 SER L 3 REMARK 465 VAL L 4 REMARK 465 THR L 5 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 465 GLY U 112 REMARK 465 GLY U 113 REMARK 465 LEU U 114 REMARK 465 VAL U 115 REMARK 465 PRO U 116 REMARK 465 ARG U 117 REMARK 465 GLY U 118 REMARK 465 SER U 119 REMARK 465 HIS U 120 REMARK 465 HIS U 121 REMARK 465 HIS U 122 REMARK 465 HIS U 123 REMARK 465 HIS U 124 REMARK 465 HIS U 125 REMARK 465 HIS U 126 REMARK 465 HIS U 127 REMARK 465 GLU V 1 REMARK 465 ILE V 2 REMARK 465 VAL V 106 REMARK 465 GLY V 107 REMARK 465 GLY V 108 REMARK 465 GLY V 109 REMARK 465 GLY V 110 REMARK 465 SER V 111 REMARK 465 GLY V 112 REMARK 465 GLY V 113 REMARK 465 GLY V 114 REMARK 465 GLY V 115 REMARK 465 SER V 116 REMARK 465 GLY V 117 REMARK 465 GLY V 118 REMARK 465 GLY V 119 REMARK 465 GLY V 120 REMARK 465 SER V 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 519 84.63 -69.80 REMARK 500 SER B 546 -101.89 45.43 REMARK 500 LEU B 568 -9.13 -157.64 REMARK 500 THR B 569 -148.84 -75.53 REMARK 500 THR B 606 -163.47 -129.68 REMARK 500 SER B 615 105.83 -160.19 REMARK 500 ASN B 625 -95.64 -143.40 REMARK 500 GLN B 652 48.95 -89.57 REMARK 500 GLN B 653 -45.11 -148.45 REMARK 500 GLN D 6 -161.57 -114.93 REMARK 500 THR D 12 -163.07 -116.57 REMARK 500 CYS D 22 93.13 -161.94 REMARK 500 ARG D 66 -35.72 -133.34 REMARK 500 ASP D 72 -142.99 -85.81 REMARK 500 ARG D 82A -81.20 -113.70 REMARK 500 SER D 100B 57.67 -146.55 REMARK 500 TYR D 101 -64.02 -99.90 REMARK 500 LEU D 109 -155.67 -91.91 REMARK 500 GLN E 1 35.90 -154.75 REMARK 500 GLN E 6 -129.19 -129.33 REMARK 500 ALA E 8 -80.32 54.25 REMARK 500 CYS E 23 100.08 -165.30 REMARK 500 VAL E 27B 17.31 -146.76 REMARK 500 CYS E 27C 136.43 -171.62 REMARK 500 CYS E 28 -39.54 -140.28 REMARK 500 PRO E 40 102.07 -59.62 REMARK 500 ARG E 42 -150.43 -129.78 REMARK 500 ASP E 51 -65.78 64.52 REMARK 500 PRO E 60 0.41 -66.29 REMARK 500 ASP E 77 85.45 53.38 REMARK 500 GLU E 81 30.52 -90.93 REMARK 500 THR E 92 -165.24 -122.80 REMARK 500 SER E 95 -154.94 -134.51 REMARK 500 ASN G 94 101.68 -166.83 REMARK 500 LEU G 122 56.74 -95.03 REMARK 500 CYS G 126 71.34 -69.65 REMARK 500 ASN G 136 -94.18 -158.44 REMARK 500 GLU G 153 -92.34 -89.64 REMARK 500 THR G 163 -167.10 -125.21 REMARK 500 THR G 198 -59.27 -121.71 REMARK 500 GLN G 258 -54.28 62.89 REMARK 500 ASN G 262 19.64 55.70 REMARK 500 GLU G 268 -106.96 59.04 REMARK 500 ARG G 273 -107.89 -114.82 REMARK 500 SER G 274 134.38 65.63 REMARK 500 PRO G 313 90.53 -67.49 REMARK 500 ARG G 327 -157.10 -129.24 REMARK 500 PHE G 376 -162.86 -166.74 REMARK 500 ASN G 392 67.64 -159.11 REMARK 500 ASP G 412 -84.11 -102.50 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NM6 RELATED DB: PDB DBREF 6NNF B 512 664 UNP Q2N0S6 Q2N0S6_9HIV1 509 661 DBREF 6NNF D 1 135 PDB 6NNF 6NNF 1 135 DBREF 6NNF E 0 125 PDB 6NNF 6NNF 0 125 DBREF 6NNF G 31 508 UNP Q2N0S6 Q2N0S6_9HIV1 30 505 DBREF 6NNF H 1 223 PDB 6NNF 6NNF 1 223 DBREF 6NNF L 3 213 PDB 6NNF 6NNF 3 213 DBREF 6NNF U 1 127 PDB 6NNF 6NNF 1 127 DBREF 6NNF V 1 121 PDB 6NNF 6NNF 1 121 SEQADV 6NNF PRO B 559 UNP Q2N0S6 ILE 556 ENGINEERED MUTATION SEQADV 6NNF CYS B 605 UNP Q2N0S6 THR 602 ENGINEERED MUTATION SEQADV 6NNF ALA G 137 UNP Q2N0S6 ASN 136 ENGINEERED MUTATION SEQADV 6NNF ASN G 332 UNP Q2N0S6 THR 330 ENGINEERED MUTATION SEQADV 6NNF CYS G 501 UNP Q2N0S6 ALA 498 ENGINEERED MUTATION SEQADV 6NNF ARG G 509 UNP Q2N0S6 EXPRESSION TAG SEQADV 6NNF ARG G 510 UNP Q2N0S6 EXPRESSION TAG SEQADV 6NNF ARG G 511 UNP Q2N0S6 EXPRESSION TAG SEQADV 6NNF ARG G 512 UNP Q2N0S6 EXPRESSION TAG SEQADV 6NNF ARG G 513 UNP Q2N0S6 EXPRESSION TAG SEQRES 1 B 153 ALA VAL GLY ILE GLY ALA VAL PHE LEU GLY PHE LEU GLY SEQRES 2 B 153 ALA ALA GLY SER THR MET GLY ALA ALA SER MET THR LEU SEQRES 3 B 153 THR VAL GLN ALA ARG ASN LEU LEU SER GLY ILE VAL GLN SEQRES 4 B 153 GLN GLN SER ASN LEU LEU ARG ALA PRO GLU ALA GLN GLN SEQRES 5 B 153 HIS LEU LEU LYS LEU THR VAL TRP GLY ILE LYS GLN LEU SEQRES 6 B 153 GLN ALA ARG VAL LEU ALA VAL GLU ARG TYR LEU ARG ASP SEQRES 7 B 153 GLN GLN LEU LEU GLY ILE TRP GLY CYS SER GLY LYS LEU SEQRES 8 B 153 ILE CYS CYS THR ASN VAL PRO TRP ASN SER SER TRP SER SEQRES 9 B 153 ASN ARG ASN LEU SER GLU ILE TRP ASP ASN MET THR TRP SEQRES 10 B 153 LEU GLN TRP ASP LYS GLU ILE SER ASN TYR THR GLN ILE SEQRES 11 B 153 ILE TYR GLY LEU LEU GLU GLU SER GLN ASN GLN GLN GLU SEQRES 12 B 153 LYS ASN GLU GLN ASP LEU LEU ALA LEU ASP SEQRES 1 D 153 GLN GLY GLN LEU VAL GLN SER GLY ALA THR THR THR LYS SEQRES 2 D 153 PRO GLY SER SER VAL LYS ILE SER CYS LYS THR SER GLY SEQRES 3 D 153 TYR ARG PHE ASN PHE TYR HIS ILE ASN TRP ILE ARG GLN SEQRES 4 D 153 THR ALA GLY ARG GLY PRO GLU TRP MET GLY TRP ILE SER SEQRES 5 D 153 PRO TYR SER GLY ASP LYS ASN LEU ALA PRO ALA PHE GLN SEQRES 6 D 153 ASP ARG VAL ASN MET THR THR ASP THR GLU VAL PRO VAL SEQRES 7 D 153 THR SER PHE THR SER THR GLY ALA ALA TYR MET GLU ILE SEQRES 8 D 153 ARG ASN LEU THR SER ASP ASP THR GLY THR TYR PHE CYS SEQRES 9 D 153 ALA LYS GLY LEU LEU ARG ASP GLY SER SER THR TRP LEU SEQRES 10 D 153 PRO TYR LEU TRP GLY GLN GLY THR LEU LEU THR VAL SER SEQRES 11 D 153 SER ALA SER THR GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 12 D 153 SER GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 1 E 130 SER GLN SER VAL LEU THR GLN SER ALA SER VAL SER GLY SEQRES 2 E 130 SER LEU GLY GLN SER VAL THR ILE SER CYS THR GLY PRO SEQRES 3 E 130 ASN SER VAL CYS CYS SER HIS LYS SER ILE SER TRP TYR SEQRES 4 E 130 GLN TRP PRO PRO GLY ARG ALA PRO THR LEU ILE ILE TYR SEQRES 5 E 130 GLU ASP ASN GLU ARG ALA PRO GLY ILE SER PRO ARG PHE SEQRES 6 E 130 SER GLY TYR LYS SER TYR TRP SER ALA TYR LEU THR ILE SEQRES 7 E 130 SER ASP LEU ARG PRO GLU ASP GLU THR THR TYR TYR CYS SEQRES 8 E 130 CYS SER TYR THR HIS ASN SER GLY CYS VAL PHE GLY THR SEQRES 9 E 130 GLY THR LYS VAL SER VAL LEU GLY GLN SER GLY GLY LEU SEQRES 10 E 130 VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 G 481 ALA GLU ASN LEU TRP VAL THR VAL TYR TYR GLY VAL PRO SEQRES 2 G 481 VAL TRP LYS ASP ALA GLU THR THR LEU PHE CYS ALA SER SEQRES 3 G 481 ASP ALA LYS ALA TYR GLU THR GLU LYS HIS ASN VAL TRP SEQRES 4 G 481 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 5 G 481 GLU ILE HIS LEU GLU ASN VAL THR GLU GLU PHE ASN MET SEQRES 6 G 481 TRP LYS ASN ASN MET VAL GLU GLN MET HIS THR ASP ILE SEQRES 7 G 481 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 8 G 481 LEU THR PRO LEU CYS VAL THR LEU GLN CYS THR ASN VAL SEQRES 9 G 481 THR ASN ALA ILE THR ASP ASP MET ARG GLY GLU LEU LYS SEQRES 10 G 481 ASN CYS SER PHE ASN MET THR THR GLU LEU ARG ASP LYS SEQRES 11 G 481 LYS GLN LYS VAL TYR SER LEU PHE TYR ARG LEU ASP VAL SEQRES 12 G 481 VAL GLN ILE ASN GLU ASN GLN GLY ASN ARG SER ASN ASN SEQRES 13 G 481 SER ASN LYS GLU TYR ARG LEU ILE ASN CYS ASN THR SER SEQRES 14 G 481 ALA ILE THR GLN ALA CYS PRO LYS VAL SER PHE GLU PRO SEQRES 15 G 481 ILE PRO ILE HIS TYR CYS ALA PRO ALA GLY PHE ALA ILE SEQRES 16 G 481 LEU LYS CYS LYS ASP LYS LYS PHE ASN GLY THR GLY PRO SEQRES 17 G 481 CYS PRO SER VAL SER THR VAL GLN CYS THR HIS GLY ILE SEQRES 18 G 481 LYS PRO VAL VAL SER THR GLN LEU LEU LEU ASN GLY SER SEQRES 19 G 481 LEU ALA GLU GLU GLU VAL MET ILE ARG SER GLU ASN ILE SEQRES 20 G 481 THR ASN ASN ALA LYS ASN ILE LEU VAL GLN PHE ASN THR SEQRES 21 G 481 PRO VAL GLN ILE ASN CYS THR ARG PRO ASN ASN ASN THR SEQRES 22 G 481 ARG LYS SER ILE ARG ILE GLY PRO GLY GLN ALA PHE TYR SEQRES 23 G 481 ALA THR GLY ASP ILE ILE GLY ASP ILE ARG GLN ALA HIS SEQRES 24 G 481 CYS ASN VAL SER LYS ALA THR TRP ASN GLU THR LEU GLY SEQRES 25 G 481 LYS VAL VAL LYS GLN LEU ARG LYS HIS PHE GLY ASN ASN SEQRES 26 G 481 THR ILE ILE ARG PHE ALA ASN SER SER GLY GLY ASP LEU SEQRES 27 G 481 GLU VAL THR THR HIS SER PHE ASN CYS GLY GLY GLU PHE SEQRES 28 G 481 PHE TYR CYS ASN THR SER GLY LEU PHE ASN SER THR TRP SEQRES 29 G 481 ILE SER ASN THR SER VAL GLN GLY SER ASN SER THR GLY SEQRES 30 G 481 SER ASN ASP SER ILE THR LEU PRO CYS ARG ILE LYS GLN SEQRES 31 G 481 ILE ILE ASN MET TRP GLN ARG ILE GLY GLN ALA MET TYR SEQRES 32 G 481 ALA PRO PRO ILE GLN GLY VAL ILE ARG CYS VAL SER ASN SEQRES 33 G 481 ILE THR GLY LEU ILE LEU THR ARG ASP GLY GLY SER THR SEQRES 34 G 481 ASN SER THR THR GLU THR PHE ARG PRO GLY GLY GLY ASP SEQRES 35 G 481 MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS SEQRES 36 G 481 VAL VAL LYS ILE GLU PRO LEU GLY VAL ALA PRO THR ARG SEQRES 37 G 481 CYS LYS ARG ARG VAL VAL GLY ARG ARG ARG ARG ARG ARG SEQRES 1 H 244 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 244 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 244 GLY SER ILE SER ASN TYR TYR TRP SER TRP ILE ARG GLN SEQRES 4 H 244 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE SER SEQRES 5 H 244 ASP SER GLU SER THR ASN TYR ASN PRO SER LEU LYS SER SEQRES 6 H 244 ARG VAL ILE ILE SER VAL ASP THR SER LYS ASN GLN LEU SEQRES 7 H 244 SER LEU LYS LEU ASN SER VAL THR ALA ALA ASP SER ALA SEQRES 8 H 244 ILE TYR TYR CYS ALA ARG ALA GLN GLN GLY LYS ARG ILE SEQRES 9 H 244 TYR GLY MET VAL SER PHE GLY GLU PHE PHE TYR TYR TYR SEQRES 10 H 244 TYR MET ASP VAL TRP GLY LYS GLY THR THR VAL THR VAL SEQRES 11 H 244 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 244 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 244 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 244 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 244 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 244 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 244 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 244 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 H 244 CYS ASP LYS GLY LEU GLU VAL LEU PHE GLN SEQRES 1 L 217 SER VAL THR SER TYR VAL ARG PRO LEU SER VAL ALA LEU SEQRES 2 L 217 GLY GLU THR ALA SER ILE SER CYS GLY ARG GLN ALA LEU SEQRES 3 L 217 GLY SER ARG ALA VAL GLN TRP TYR GLN HIS ARG PRO GLY SEQRES 4 L 217 GLN ALA PRO ILE LEU LEU ILE TYR ASN ASN GLN ASP ARG SEQRES 5 L 217 PRO SER GLY ILE PRO GLU ARG PHE SER GLY THR PRO ASP SEQRES 6 L 217 ILE ASN PHE GLY THR ARG ALA THR LEU THR ILE SER GLY SEQRES 7 L 217 VAL GLU ALA GLY ASP GLU ALA ASP TYR TYR CYS HIS MET SEQRES 8 L 217 TRP ASP SER ARG SER GLY PHE SER TRP SER PHE GLY GLY SEQRES 9 L 217 ALA THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA ALA SEQRES 10 L 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 L 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 L 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 L 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 L 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 L 217 LEU SER LEU THR PRO MET GLN TRP LYS MET HIS LYS SER SEQRES 16 L 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 L 217 LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 U 142 GLN VAL GLN LEU VAL GLN SER GLY GLY GLN MET LYS LYS SEQRES 2 U 142 PRO GLY GLU SER MET ARG ILE SER CYS ARG ALA SER GLY SEQRES 3 U 142 TYR GLU PHE ILE ASP CYS THR LEU ASN TRP ILE ARG LEU SEQRES 4 U 142 ALA PRO GLY LYS ARG PRO GLU TRP MET GLY TRP LEU LYS SEQRES 5 U 142 PRO ARG GLY GLY ALA VAL ASN TYR ALA ARG PRO LEU GLN SEQRES 6 U 142 GLY ARG VAL THR MET THR ARG GLN LEU SER GLN ASP PRO SEQRES 7 U 142 ASP ASP PRO ASP TRP GLY THR ALA PHE LEU GLU LEU ARG SEQRES 8 U 142 SER LEU THR VAL ASP ASP THR ALA VAL TYR PHE CYS THR SEQRES 9 U 142 ARG GLY LYS ASN CYS ASP TYR ASN TRP ASP PHE GLU HIS SEQRES 10 U 142 TRP GLY ARG GLY THR PRO VAL ILE VAL GLY GLY LEU VAL SEQRES 11 U 142 PRO ARG GLY SER HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 V 115 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 V 115 SER PRO GLY GLU THR ALA ILE ILE SER CYS ARG THR SER SEQRES 3 V 115 GLN TYR GLY SER LEU ALA TRP TYR GLN GLN ARG PRO GLY SEQRES 4 V 115 GLN ALA PRO ARG LEU VAL ILE TYR SER GLY SER THR ARG SEQRES 5 V 115 ALA ALA GLY ILE PRO ASP ARG PHE SER GLY SER ARG TRP SEQRES 6 V 115 GLY PRO ASP TYR ASN LEU THR ILE SER ASN LEU GLU SER SEQRES 7 V 115 GLY ASP PHE GLY VAL TYR TYR CYS GLN GLN TYR GLU PHE SEQRES 8 V 115 PHE GLY GLN GLY THR LYS VAL GLN VAL GLY GLY GLY GLY SEQRES 9 V 115 SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET MAN A 4 11 HET MAN A 5 11 HET MAN A 6 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET MAN F 5 11 HET NAG I 1 14 HET NAG I 2 14 HET NAG J 1 14 HET NAG J 2 14 HET BMA J 3 11 HET MAN J 4 11 HET NAG K 1 14 HET NAG K 2 14 HET NAG M 1 14 HET NAG M 2 14 HET NAG N 1 14 HET NAG N 2 14 HET NAG O 1 14 HET NAG O 2 14 HET BMA O 3 11 HET MAN O 4 11 HET MAN O 5 11 HET MAN O 6 11 HET MAN O 7 11 HET MAN O 8 11 HET MAN O 9 11 HET MAN O 10 11 HET NAG P 1 14 HET NAG P 2 14 HET NAG Q 1 14 HET NAG Q 2 14 HET NAG B 701 14 HET NAG B 702 14 HET NAG G 614 14 HET NAG G 617 14 HET NAG G 638 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 9 NAG 27(C8 H15 N O6) FORMUL 9 BMA 4(C6 H12 O6) FORMUL 9 MAN 13(C6 H12 O6) HELIX 1 AA1 THR B 529 SER B 534 1 6 HELIX 2 AA2 LEU B 537 ASN B 543 1 7 HELIX 3 AA3 THR B 569 ILE B 595 1 27 HELIX 4 AA4 LEU B 619 ASP B 624 1 6 HELIX 5 AA5 THR B 627 SER B 636 1 10 HELIX 6 AA6 TYR B 638 LEU B 661 1 24 HELIX 7 AA7 ARG D 28 TYR D 32 5 5 HELIX 8 AA8 THR D 83 ASP D 86 5 4 HELIX 9 AA9 ARG E 79 GLU E 83 5 5 HELIX 10 AB1 ALA G 70 CYS G 74 5 5 HELIX 11 AB2 ASN G 99 LEU G 116 1 18 HELIX 12 AB3 TYR G 177 LEU G 179 5 3 HELIX 13 AB4 SER G 334 GLY G 354 1 21 HELIX 14 AB5 ASP G 368 THR G 373 1 6 HELIX 15 AB6 THR G 387 LEU G 390 5 4 HELIX 16 AB7 ARG G 476 SER G 481 1 6 HELIX 17 AB8 SER H 28 TYR H 32 5 5 HELIX 18 AB9 THR H 83 SER H 87 5 5 HELIX 19 AC1 SER H 154 ALA H 156 5 3 HELIX 20 AC2 SER H 185 GLY H 188 5 4 HELIX 21 AC3 LYS H 199 ASN H 202 5 4 HELIX 22 AC4 SER L 122 ALA L 128 1 7 HELIX 23 AC5 THR L 182 MET L 188 1 7 HELIX 24 AC6 ARG U 61 GLN U 64 5 4 HELIX 25 AC7 THR U 83 THR U 87 5 5 SHEET 1 AA1 3 ILE B 603 PRO B 609 0 SHEET 2 AA1 3 TRP G 35 TYR G 40 -1 O VAL G 36 N VAL B 608 SHEET 3 AA1 3 LEU G 494 THR G 499 -1 O GLY G 495 N TYR G 39 SHEET 1 AA2 2 LEU D 4 GLN D 6 0 SHEET 2 AA2 2 CYS D 22 THR D 24 -1 O LYS D 23 N VAL D 5 SHEET 1 AA3 3 LYS D 19 ILE D 20 0 SHEET 2 AA3 3 ALA D 78 GLU D 81 -1 O MET D 80 N ILE D 20 SHEET 3 AA3 3 ASN D 68 THR D 71 -1 N ASN D 68 O GLU D 81 SHEET 1 AA4 5 LYS D 57 LEU D 59 0 SHEET 2 AA4 5 PRO D 45 ILE D 51 -1 N TRP D 50 O ASN D 58 SHEET 3 AA4 5 ILE D 34 THR D 40 -1 N ARG D 38 O GLU D 46 SHEET 4 AA4 5 GLY D 88 LYS D 94 -1 O ALA D 93 N ASN D 35 SHEET 5 AA4 5 LEU D 102 TRP D 103 -1 O LEU D 102 N LYS D 94 SHEET 1 AA5 5 LYS D 57 LEU D 59 0 SHEET 2 AA5 5 PRO D 45 ILE D 51 -1 N TRP D 50 O ASN D 58 SHEET 3 AA5 5 ILE D 34 THR D 40 -1 N ARG D 38 O GLU D 46 SHEET 4 AA5 5 GLY D 88 LYS D 94 -1 O ALA D 93 N ASN D 35 SHEET 5 AA5 5 THR D 107 LEU D 108 -1 O THR D 107 N TYR D 90 SHEET 1 AA6 6 SER E 9 SER E 12 0 SHEET 2 AA6 6 THR E 102 SER E 105 1 O LYS E 103 N VAL E 11 SHEET 3 AA6 6 THR E 84 TYR E 91 -1 N THR E 84 O VAL E 104 SHEET 4 AA6 6 SER E 32 TRP E 38 -1 N SER E 32 O TYR E 91 SHEET 5 AA6 6 THR E 45 TYR E 49 -1 O ILE E 47 N TRP E 35 SHEET 6 AA6 6 GLU E 53 ARG E 54 -1 O GLU E 53 N TYR E 49 SHEET 1 AA7 4 SER E 9 SER E 12 0 SHEET 2 AA7 4 THR E 102 SER E 105 1 O LYS E 103 N VAL E 11 SHEET 3 AA7 4 THR E 84 TYR E 91 -1 N THR E 84 O VAL E 104 SHEET 4 AA7 4 VAL E 97 PHE E 98 -1 O VAL E 97 N SER E 90 SHEET 1 AA8 3 VAL E 19 ILE E 21 0 SHEET 2 AA8 3 ALA E 71 ILE E 75 -1 O LEU E 73 N ILE E 21 SHEET 3 AA8 3 PHE E 62 LYS E 66 -1 N TYR E 65 O TYR E 72 SHEET 1 AA9 5 TRP G 45 ASP G 47 0 SHEET 2 AA9 5 VAL G 488 ILE G 491 -1 O LYS G 490 N LYS G 46 SHEET 3 AA9 5 PHE G 223 LEU G 226 -1 N ALA G 224 O VAL G 489 SHEET 4 AA9 5 VAL G 242 VAL G 245 -1 O VAL G 245 N ILE G 225 SHEET 5 AA9 5 GLU G 83 LEU G 86 -1 N ILE G 84 O THR G 244 SHEET 1 AB1 3 VAL G 75 PRO G 76 0 SHEET 2 AB1 3 PHE G 53 SER G 56 1 N SER G 56 O VAL G 75 SHEET 3 AB1 3 HIS G 216 CYS G 218 -1 O CYS G 218 N PHE G 53 SHEET 1 AB2 2 GLU G 91 ASN G 94 0 SHEET 2 AB2 2 THR G 236 CYS G 239 -1 O GLY G 237 N PHE G 93 SHEET 1 AB3 5 LYS G 169 PHE G 176 0 SHEET 2 AB3 5 LYS G 155 THR G 162 -1 N MET G 161 O GLN G 170 SHEET 3 AB3 5 LEU G 129 ASN G 133 -1 N GLN G 130 O SER G 158 SHEET 4 AB3 5 GLU G 190 LEU G 193 -1 O TYR G 191 N LEU G 129 SHEET 5 AB3 5 VAL G 181 GLN G 183 -1 N VAL G 182 O ARG G 192 SHEET 1 AB4 3 ALA G 200 GLN G 203 0 SHEET 2 AB4 3 GLN G 432 TYR G 435 1 O ALA G 433 N THR G 202 SHEET 3 AB4 3 ILE G 423 ILE G 424 -1 N ILE G 424 O MET G 434 SHEET 1 AB5 6 MET G 271 ILE G 272 0 SHEET 2 AB5 6 ILE G 284 ASN G 302 -1 O GLN G 287 N MET G 271 SHEET 3 AB5 6 HIS G 330 VAL G 333 -1 O ASN G 332 N ASN G 295 SHEET 4 AB5 6 ILE G 414 LYS G 421 -1 O ILE G 414 N VAL G 333 SHEET 5 AB5 6 GLU G 381 CYS G 385 -1 N PHE G 382 O LYS G 421 SHEET 6 AB5 6 HIS G 374 CYS G 378 -1 N HIS G 374 O CYS G 385 SHEET 1 AB6 6 MET G 271 ILE G 272 0 SHEET 2 AB6 6 ILE G 284 ASN G 302 -1 O GLN G 287 N MET G 271 SHEET 3 AB6 6 GLY G 441 ARG G 456 -1 O LEU G 452 N VAL G 286 SHEET 4 AB6 6 THR G 465 PRO G 470 -1 O ARG G 469 N THR G 455 SHEET 5 AB6 6 ILE G 358 PHE G 361 1 N ARG G 360 O PHE G 468 SHEET 6 AB6 6 THR G 394 TRP G 395 -1 O TRP G 395 N ILE G 359 SHEET 1 AB7 2 ARG G 304 ARG G 308 0 SHEET 2 AB7 2 ALA G 316 THR G 320 -1 O ALA G 319 N LYS G 305 SHEET 1 AB8 3 GLN H 3 SER H 7 0 SHEET 2 AB8 3 THR H 21 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AB8 3 GLN H 77 SER H 79 -1 O LEU H 78 N CYS H 22 SHEET 1 AB9 5 LEU H 11 VAL H 12 0 SHEET 2 AB9 5 THR H 105 VAL H 109 1 O THR H 108 N VAL H 12 SHEET 3 AB9 5 ALA H 88 ILE H 100A-1 N TYR H 90 O THR H 105 SHEET 4 AB9 5 TYR H 33 GLN H 39 -1 N SER H 35 O ALA H 93 SHEET 5 AB9 5 LEU H 45 ILE H 51 -1 O ILE H 51 N TRP H 34 SHEET 1 AC1 4 LEU H 11 VAL H 12 0 SHEET 2 AC1 4 THR H 105 VAL H 109 1 O THR H 108 N VAL H 12 SHEET 3 AC1 4 ALA H 88 ILE H 100A-1 N TYR H 90 O THR H 105 SHEET 4 AC1 4 PHE H 100J VAL H 100R-1 O TYR H 100M N GLY H 98 SHEET 1 AC2 4 VAL H 119 LEU H 122 0 SHEET 2 AC2 4 THR H 133 TYR H 143 -1 O LEU H 139 N PHE H 120 SHEET 3 AC2 4 TYR H 174 PRO H 183 -1 O VAL H 180 N LEU H 136 SHEET 4 AC2 4 VAL H 161 THR H 163 -1 N HIS H 162 O VAL H 179 SHEET 1 AC3 4 VAL H 119 LEU H 122 0 SHEET 2 AC3 4 THR H 133 TYR H 143 -1 O LEU H 139 N PHE H 120 SHEET 3 AC3 4 TYR H 174 PRO H 183 -1 O VAL H 180 N LEU H 136 SHEET 4 AC3 4 VAL H 167 LEU H 168 -1 O VAL H 167 N SER H 175 SHEET 1 AC4 3 THR H 149 TRP H 152 0 SHEET 2 AC4 3 ILE H 193 HIS H 198 -1 O ASN H 195 N SER H 151 SHEET 3 AC4 3 THR H 203 LYS H 208 -1 O VAL H 205 N VAL H 196 SHEET 1 AC5 5 ARG L 9 ALA L 14 0 SHEET 2 AC5 5 THR L 102 LEU L 107 1 O LEU L 107 N VAL L 13 SHEET 3 AC5 5 ASP L 85 HIS L 89 -1 N TYR L 86 O THR L 102 SHEET 4 AC5 5 GLN L 34 HIS L 38 -1 N HIS L 38 O ASP L 85 SHEET 5 AC5 5 ILE L 45 ILE L 48 -1 O ILE L 45 N GLN L 37 SHEET 1 AC6 3 THR L 18 SER L 22 0 SHEET 2 AC6 3 THR L 72 SER L 76 -1 O LEU L 73 N ILE L 21 SHEET 3 AC6 3 PHE L 62 GLY L 64 -1 N SER L 63 O THR L 74 SHEET 1 AC7 4 THR L 117 PHE L 119 0 SHEET 2 AC7 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AC7 4 SER L 177 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 AC7 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AC8 4 THR L 117 PHE L 119 0 SHEET 2 AC8 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AC8 4 TYR L 173 ALA L 175 -1 O ALA L 175 N ILE L 137 SHEET 4 AC8 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AC9 4 SER L 154 PRO L 155 0 SHEET 2 AC9 4 VAL L 145 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AC9 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 AC9 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SHEET 1 AD1 2 GLN U 3 GLN U 6 0 SHEET 2 AD1 2 CYS U 22 SER U 25 -1 O ARG U 23 N VAL U 5 SHEET 1 AD2 6 GLN U 10 MET U 11 0 SHEET 2 AD2 6 THR U 107 ILE U 110 1 O PRO U 108 N GLN U 10 SHEET 3 AD2 6 ALA U 88 GLY U 95 -1 N ALA U 88 O VAL U 109 SHEET 4 AD2 6 LEU U 34 LEU U 39 -1 N ILE U 37 O PHE U 91 SHEET 5 AD2 6 GLU U 46 LYS U 52 -1 O MET U 48 N TRP U 36 SHEET 6 AD2 6 ALA U 56 TYR U 59 -1 O ALA U 56 N LYS U 52 SHEET 1 AD3 4 GLN U 10 MET U 11 0 SHEET 2 AD3 4 THR U 107 ILE U 110 1 O PRO U 108 N GLN U 10 SHEET 3 AD3 4 ALA U 88 GLY U 95 -1 N ALA U 88 O VAL U 109 SHEET 4 AD3 4 PHE U 100D TRP U 103 -1 O HIS U 102 N ARG U 94 SHEET 1 AD4 3 MET U 18 ILE U 20 0 SHEET 2 AD4 3 PHE U 79 LEU U 82 -1 O LEU U 80 N ILE U 20 SHEET 3 AD4 3 VAL U 67 THR U 70 -1 N THR U 68 O GLU U 81 SHEET 1 AD5 4 LEU V 4 SER V 7 0 SHEET 2 AD5 4 ALA V 19 THR V 25 -1 O ARG V 24 N THR V 5 SHEET 3 AD5 4 ASP V 70 ILE V 75 -1 O LEU V 73 N ILE V 21 SHEET 4 AD5 4 PHE V 62 TRP V 67 -1 N SER V 63 O THR V 74 SHEET 1 AD6 5 THR V 10 SER V 12 0 SHEET 2 AD6 5 THR V 102 GLN V 105 1 O LYS V 103 N LEU V 11 SHEET 3 AD6 5 VAL V 85 GLN V 90 -1 N TYR V 86 O THR V 102 SHEET 4 AD6 5 ALA V 34 GLN V 38 -1 N ALA V 34 O GLN V 89 SHEET 5 AD6 5 ARG V 45 LEU V 46 -1 O ARG V 45 N GLN V 37 SHEET 1 AD7 4 THR V 10 SER V 12 0 SHEET 2 AD7 4 THR V 102 GLN V 105 1 O LYS V 103 N LEU V 11 SHEET 3 AD7 4 VAL V 85 GLN V 90 -1 N TYR V 86 O THR V 102 SHEET 4 AD7 4 PHE V 97 PHE V 98 -1 O PHE V 97 N GLN V 90 SHEET 1 AD8 2 ILE V 48 TYR V 49 0 SHEET 2 AD8 2 THR V 53 ARG V 54 -1 O THR V 53 N TYR V 49 SSBOND 1 CYS B 598 CYS B 604 1555 1555 2.03 SSBOND 2 CYS B 605 CYS G 501 1555 1555 2.03 SSBOND 3 CYS D 22 CYS D 92 1555 1555 2.03 SSBOND 4 CYS E 23 CYS E 88 1555 1555 2.03 SSBOND 5 CYS E 27C CYS E 28 1555 1555 2.03 SSBOND 6 CYS E 89 CYS E 96 1555 1555 2.03 SSBOND 7 CYS G 54 CYS G 74 1555 1555 2.04 SSBOND 8 CYS G 119 CYS G 205 1555 1555 2.04 SSBOND 9 CYS G 126 CYS G 196 1555 1555 2.03 SSBOND 10 CYS G 131 CYS G 157 1555 1555 2.03 SSBOND 11 CYS G 218 CYS G 247 1555 1555 2.03 SSBOND 12 CYS G 228 CYS G 239 1555 1555 2.03 SSBOND 13 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 14 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 15 CYS G 385 CYS G 418 1555 1555 2.03 SSBOND 16 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 17 CYS H 138 CYS H 194 1555 1555 2.03 SSBOND 18 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 19 CYS L 135 CYS L 194 1555 1555 2.03 SSBOND 20 CYS U 22 CYS U 92 1555 1555 2.03 SSBOND 21 CYS U 32 CYS U 98 1555 1555 2.03 SSBOND 22 CYS V 23 CYS V 88 1555 1555 2.03 LINK ND2 ASN B 611 C1 NAG B 701 1555 1555 1.44 LINK ND2 ASN B 637 C1 NAG B 702 1555 1555 1.44 LINK ND2 ASN G 88 C1 NAG A 1 1555 1555 1.44 LINK ND2 ASN G 133 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN G 156 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN G 160 C1 NAG G 614 1555 1555 1.44 LINK ND2 ASN G 197 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN G 234 C1 NAG G 617 1555 1555 1.45 LINK ND2 ASN G 262 C1 NAG J 1 1555 1555 1.44 LINK ND2 ASN G 276 C1 NAG K 1 1555 1555 1.45 LINK ND2 ASN G 295 C1 NAG M 1 1555 1555 1.44 LINK ND2 ASN G 301 C1 NAG N 1 1555 1555 1.44 LINK ND2 ASN G 332 C1 NAG O 1 1555 1555 1.44 LINK ND2 ASN G 363 C1 NAG G 638 1555 1555 1.44 LINK ND2 ASN G 386 C1 NAG P 1 1555 1555 1.44 LINK ND2 ASN G 448 C1 NAG Q 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.44 LINK O6 BMA A 3 C1 MAN A 4 1555 1555 1.44 LINK O3 BMA A 3 C1 MAN A 6 1555 1555 1.44 LINK O3 MAN A 4 C1 MAN A 5 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.44 LINK O3 BMA F 3 C1 MAN F 4 1555 1555 1.45 LINK O6 BMA F 3 C1 MAN F 5 1555 1555 1.44 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.45 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.44 LINK O4 NAG J 2 C1 BMA J 3 1555 1555 1.45 LINK O6 BMA J 3 C1 MAN J 4 1555 1555 1.44 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.44 LINK O4 NAG M 1 C1 NAG M 2 1555 1555 1.44 LINK O4 NAG N 1 C1 NAG N 2 1555 1555 1.44 LINK O4 NAG O 1 C1 NAG O 2 1555 1555 1.44 LINK O4 NAG O 2 C1 BMA O 3 1555 1555 1.44 LINK O3 BMA O 3 C1 MAN O 4 1555 1555 1.45 LINK O6 BMA O 3 C1 MAN O 7 1555 1555 1.44 LINK O2 MAN O 4 C1 MAN O 5 1555 1555 1.44 LINK O2 MAN O 5 C1 MAN O 6 1555 1555 1.44 LINK O6 MAN O 7 C1 MAN O 8 1555 1555 1.44 LINK O3 MAN O 7 C1 MAN O 10 1555 1555 1.44 LINK O2 MAN O 8 C1 MAN O 9 1555 1555 1.45 LINK O4 NAG P 1 C1 NAG P 2 1555 1555 1.44 LINK O4 NAG Q 1 C1 NAG Q 2 1555 1555 1.44 CISPEP 1 CYS E 27C CYS E 28 0 -1.80 CISPEP 2 PHE H 144 PRO H 145 0 -3.50 CISPEP 3 GLU H 146 PRO H 147 0 -3.08 CISPEP 4 GLY H 188 THR H 189 0 -0.16 CISPEP 5 TYR L 141 PRO L 142 0 -2.26 CISPEP 6 SER V 7 PRO V 8 0 -1.32 CRYST1 130.870 130.870 315.190 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007641 0.004412 0.000000 0.00000 SCALE2 0.000000 0.008823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003173 0.00000