HEADER BIOSYNTHETIC PROTEIN 15-JAN-19 6NNH TITLE STRUCTURE OF CLOSED STATE OF DIHYDROFOLATE REDUCTASE FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH NADPH AND CYCLOGUANIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: FOLA, DFRA, RV2763C, MTV002.28C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ANTIFOLATE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.H.P.GIUDICE,J.A.RIBEIRO,M.V.B.DIAS REVDAT 3 11-OCT-23 6NNH 1 LINK REVDAT 2 13-NOV-19 6NNH 1 JRNL REVDAT 1 17-JUL-19 6NNH 0 JRNL AUTH J.A.RIBEIRO,S.M.CHAVEZ-PACHECO,G.S.DE OLIVEIRA,C.D.S.SILVA, JRNL AUTH 2 J.H.P.GIUDICE,G.A.LIBREROS-ZUNIGA,M.V.B.DIAS JRNL TITL CRYSTAL STRUCTURES OF THE CLOSED FORM OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS DIHYDROFOLATE REDUCTASE IN COMPLEX WITH JRNL TITL 3 DIHYDROFOLATE AND ANTIFOLATES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 682 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31282477 JRNL DOI 10.1107/S205979831900901X REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 47699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.6385 - 3.8560 1.00 2902 116 0.1674 0.1955 REMARK 3 2 3.8560 - 3.0852 1.00 2772 120 0.1546 0.1849 REMARK 3 3 3.0852 - 2.7025 1.00 2743 137 0.1719 0.1721 REMARK 3 4 2.7025 - 2.4587 1.00 2669 160 0.1688 0.2201 REMARK 3 5 2.4587 - 2.2844 1.00 2715 139 0.1657 0.1838 REMARK 3 6 2.2844 - 2.1509 1.00 2674 146 0.1674 0.1976 REMARK 3 7 2.1509 - 2.0439 1.00 2678 158 0.1689 0.1763 REMARK 3 8 2.0439 - 1.9555 1.00 2669 136 0.1662 0.2016 REMARK 3 9 1.9555 - 1.8807 1.00 2662 145 0.1614 0.1915 REMARK 3 10 1.8807 - 1.8161 1.00 2679 140 0.1688 0.1931 REMARK 3 11 1.8161 - 1.7596 1.00 2671 139 0.1681 0.2142 REMARK 3 12 1.7596 - 1.7095 1.00 2656 137 0.1703 0.2235 REMARK 3 13 1.7095 - 1.6647 1.00 2665 122 0.1775 0.2293 REMARK 3 14 1.6647 - 1.6242 1.00 2674 139 0.1862 0.1990 REMARK 3 15 1.6242 - 1.5874 1.00 2656 151 0.1901 0.2483 REMARK 3 16 1.5874 - 1.5537 0.97 2562 134 0.2125 0.2527 REMARK 3 17 1.5537 - 1.5227 0.87 2306 127 0.2507 0.2821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 22.5412 0.0139 17.6926 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.1155 REMARK 3 T33: 0.0700 T12: -0.0026 REMARK 3 T13: -0.0165 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.8242 L22: 0.2743 REMARK 3 L33: 0.1136 L12: -0.2379 REMARK 3 L13: -0.3968 L23: 0.0831 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0133 S13: 0.0103 REMARK 3 S21: -0.0111 S22: 0.0010 S23: -0.0109 REMARK 3 S31: -0.0035 S32: 0.0161 S33: 0.0051 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 23 OR RESID REMARK 3 25 THROUGH 31 OR RESID 33 OR RESID 35 REMARK 3 THROUGH 87 OR RESID 89 THROUGH 107 OR REMARK 3 RESID 109 THROUGH 158 OR (RESID 159 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME OG )))) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 23 OR RESID REMARK 3 25 THROUGH 31 OR RESID 33 OR RESID 35 REMARK 3 THROUGH 87 OR RESID 89 THROUGH 107 OR REMARK 3 RESID 109 THROUGH 159)) REMARK 3 ATOM PAIRS NUMBER : 920 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47946 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 46.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.89600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6NND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULPHATE, 10 MM COCL2, REMARK 280 100 MM MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.15950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.10950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.62250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.10950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.15950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.62250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 404 O HOH A 472 2.02 REMARK 500 O HOH B 343 O HOH B 399 2.05 REMARK 500 O HOH B 407 O HOH B 436 2.10 REMARK 500 OE1 GLU A 33 O HOH A 301 2.12 REMARK 500 OG SER B 159 O HOH B 301 2.14 REMARK 500 O HOH A 435 O HOH A 465 2.14 REMARK 500 NH2 ARG B 143 O HOH B 302 2.15 REMARK 500 OE2 GLU A 33 O HOH A 302 2.18 REMARK 500 O HOH A 426 O HOH A 460 2.18 REMARK 500 O HOH A 321 O HOH A 408 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 83 O HOH A 424 2554 2.05 REMARK 500 O HOH A 415 O HOH B 314 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 33 CG GLU A 33 CD -0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 133 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 GLU A 133 N - CA - CB ANGL. DEV. = -15.2 DEGREES REMARK 500 GLN B 28 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG B 136 CG - CD - NE ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 35.37 -86.92 REMARK 500 PRO B 21 43.02 -85.49 REMARK 500 LEU B 24 85.15 -154.13 REMARK 500 LEU B 24 85.92 -154.57 REMARK 500 LEU B 86 76.43 -102.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 483 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A 484 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH B 452 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 206 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 38 NE2 REMARK 620 2 HOH A 316 O 89.3 REMARK 620 3 HOH A 344 O 87.3 94.4 REMARK 620 4 HIS B 157 NE2 173.1 89.3 86.2 REMARK 620 5 HOH B 380 O 94.1 86.3 178.5 92.5 REMARK 620 6 HOH B 386 O 92.5 176.7 88.5 89.4 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 205 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 356 O REMARK 620 2 HIS B 38 NE2 173.2 REMARK 620 3 HOH B 317 O 87.9 90.2 REMARK 620 4 HOH B 362 O 91.7 94.7 86.1 REMARK 620 5 HOH B 367 O 85.4 88.3 95.5 176.5 REMARK 620 6 HOH B 413 O 90.5 92.0 173.3 87.4 90.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1CY A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1CY B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 206 DBREF 6NNH A 1 159 UNP P9WNX1 DYR_MYCTU 3 161 DBREF 6NNH B 1 159 UNP P9WNX1 DYR_MYCTU 3 161 SEQRES 1 A 159 MET VAL GLY LEU ILE TRP ALA GLN ALA THR SER GLY VAL SEQRES 2 A 159 ILE GLY ARG GLY GLY ASP ILE PRO TRP ARG LEU PRO GLU SEQRES 3 A 159 ASP GLN ALA HIS PHE ARG GLU ILE THR MET GLY HIS THR SEQRES 4 A 159 ILE VAL MET GLY ARG ARG THR TRP ASP SER LEU PRO ALA SEQRES 5 A 159 LYS VAL ARG PRO LEU PRO GLY ARG ARG ASN VAL VAL LEU SEQRES 6 A 159 SER ARG GLN ALA ASP PHE MET ALA SER GLY ALA GLU VAL SEQRES 7 A 159 VAL GLY SER LEU GLU GLU ALA LEU THR SER PRO GLU THR SEQRES 8 A 159 TRP VAL ILE GLY GLY GLY GLN VAL TYR ALA LEU ALA LEU SEQRES 9 A 159 PRO TYR ALA THR ARG CYS GLU VAL THR GLU VAL ASP ILE SEQRES 10 A 159 GLY LEU PRO ARG GLU ALA GLY ASP ALA LEU ALA PRO VAL SEQRES 11 A 159 LEU ASP GLU THR TRP ARG GLY GLU THR GLY GLU TRP ARG SEQRES 12 A 159 PHE SER ARG SER GLY LEU ARG TYR ARG LEU TYR SER TYR SEQRES 13 A 159 HIS ARG SER SEQRES 1 B 159 MET VAL GLY LEU ILE TRP ALA GLN ALA THR SER GLY VAL SEQRES 2 B 159 ILE GLY ARG GLY GLY ASP ILE PRO TRP ARG LEU PRO GLU SEQRES 3 B 159 ASP GLN ALA HIS PHE ARG GLU ILE THR MET GLY HIS THR SEQRES 4 B 159 ILE VAL MET GLY ARG ARG THR TRP ASP SER LEU PRO ALA SEQRES 5 B 159 LYS VAL ARG PRO LEU PRO GLY ARG ARG ASN VAL VAL LEU SEQRES 6 B 159 SER ARG GLN ALA ASP PHE MET ALA SER GLY ALA GLU VAL SEQRES 7 B 159 VAL GLY SER LEU GLU GLU ALA LEU THR SER PRO GLU THR SEQRES 8 B 159 TRP VAL ILE GLY GLY GLY GLN VAL TYR ALA LEU ALA LEU SEQRES 9 B 159 PRO TYR ALA THR ARG CYS GLU VAL THR GLU VAL ASP ILE SEQRES 10 B 159 GLY LEU PRO ARG GLU ALA GLY ASP ALA LEU ALA PRO VAL SEQRES 11 B 159 LEU ASP GLU THR TRP ARG GLY GLU THR GLY GLU TRP ARG SEQRES 12 B 159 PHE SER ARG SER GLY LEU ARG TYR ARG LEU TYR SER TYR SEQRES 13 B 159 HIS ARG SER HET 1CY A 201 17 HET NDP A 202 48 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET CO A 206 1 HET 1CY B 201 17 HET NDP B 202 48 HET SO4 B 203 5 HET SO4 B 204 5 HET CO B 205 1 HET GOL B 206 6 HETNAM 1CY 1-(4-CHLOROPHENYL)-6,6-DIMETHYL-1,6-DIHYDRO-1,3,5- HETNAM 2 1CY TRIAZINE-2,4-DIAMINE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM SO4 SULFATE ION HETNAM CO COBALT (II) ION HETNAM GOL GLYCEROL HETSYN 1CY CYCLOGUANIL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 1CY 2(C11 H14 CL N5) FORMUL 4 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 SO4 5(O4 S 2-) FORMUL 8 CO 2(CO 2+) FORMUL 14 GOL C3 H8 O3 FORMUL 15 HOH *336(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 PRO A 51 ARG A 55 5 5 HELIX 4 AA4 SER A 81 LEU A 86 5 6 HELIX 5 AA5 GLY A 96 LEU A 104 1 9 HELIX 6 AA6 PRO A 105 ALA A 107 5 3 HELIX 7 AA7 LEU B 24 MET B 36 1 13 HELIX 8 AA8 ARG B 44 LEU B 50 1 7 HELIX 9 AA9 PRO B 51 ARG B 55 5 5 HELIX 10 AB1 SER B 81 LEU B 86 1 6 HELIX 11 AB2 GLY B 96 LEU B 104 1 9 HELIX 12 AB3 PRO B 105 ALA B 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61 SHEET 4 AA1 8 THR A 91 GLY A 95 1 O TRP A 92 N THR A 39 SHEET 5 AA1 8 VAL A 2 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O TYR A 156 N CYS A 110 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N ARG A 136 O HIS A 157 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N ILE A 40 O ARG A 61 SHEET 4 AA2 8 THR A 91 GLY A 95 1 O TRP A 92 N THR A 39 SHEET 5 AA2 8 VAL A 2 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O TYR A 156 N CYS A 110 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 SHEET 1 AA4 8 GLU B 77 VAL B 79 0 SHEET 2 AA4 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA4 8 THR B 39 GLY B 43 1 N ILE B 40 O ARG B 61 SHEET 4 AA4 8 THR B 91 GLY B 95 1 O TRP B 92 N THR B 39 SHEET 5 AA4 8 VAL B 2 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA4 8 ARG B 109 VAL B 115 1 O THR B 113 N GLN B 8 SHEET 7 AA4 8 ARG B 150 HIS B 157 -1 O TYR B 154 N VAL B 112 SHEET 8 AA4 8 ARG B 136 THR B 139 -1 N ARG B 136 O HIS B 157 SHEET 1 AA5 8 GLU B 77 VAL B 79 0 SHEET 2 AA5 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA5 8 THR B 39 GLY B 43 1 N ILE B 40 O ARG B 61 SHEET 4 AA5 8 THR B 91 GLY B 95 1 O TRP B 92 N THR B 39 SHEET 5 AA5 8 VAL B 2 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA5 8 ARG B 109 VAL B 115 1 O THR B 113 N GLN B 8 SHEET 7 AA5 8 ARG B 150 HIS B 157 -1 O TYR B 154 N VAL B 112 SHEET 8 AA5 8 ARG B 143 PHE B 144 -1 N ARG B 143 O TYR B 151 SHEET 1 AA6 2 VAL B 13 GLY B 15 0 SHEET 2 AA6 2 ALA B 126 LEU B 127 -1 O ALA B 126 N ILE B 14 LINK NE2 HIS A 38 CO CO A 206 1555 1555 2.11 LINK CO CO A 206 O HOH A 316 1555 1555 2.09 LINK CO CO A 206 O HOH A 344 1555 1555 2.13 LINK CO CO A 206 NE2 HIS B 157 1555 1555 2.07 LINK CO CO A 206 O HOH B 380 1555 1555 2.10 LINK CO CO A 206 O HOH B 386 1555 3655 2.18 LINK O HOH A 356 CO CO B 205 1555 1555 1.93 LINK NE2 HIS B 38 CO CO B 205 1555 1555 2.09 LINK CO CO B 205 O HOH B 317 1555 1555 2.11 LINK CO CO B 205 O HOH B 362 1555 1555 2.14 LINK CO CO B 205 O HOH B 367 1555 1555 2.16 LINK CO CO B 205 O HOH B 413 1555 1555 2.07 CISPEP 1 ARG A 55 PRO A 56 0 0.39 CISPEP 2 GLY A 95 GLY A 96 0 0.94 CISPEP 3 ARG B 55 PRO B 56 0 -0.67 CISPEP 4 GLY B 95 GLY B 96 0 0.56 SITE 1 AC1 11 ILE A 5 TRP A 6 ALA A 7 ASP A 27 SITE 2 AC1 11 PHE A 31 THR A 46 LEU A 50 ILE A 94 SITE 3 AC1 11 THR A 113 NDP A 202 HOH A 385 SITE 1 AC2 36 TRP A 6 ALA A 7 ILE A 14 GLY A 15 SITE 2 AC2 36 ARG A 16 GLY A 18 ASP A 19 ILE A 20 SITE 3 AC2 36 GLY A 43 ARG A 44 ARG A 45 THR A 46 SITE 4 AC2 36 LEU A 65 SER A 66 ARG A 67 GLN A 68 SITE 5 AC2 36 GLY A 80 ILE A 94 GLY A 95 GLY A 96 SITE 6 AC2 36 GLY A 97 GLN A 98 VAL A 99 TYR A 100 SITE 7 AC2 36 LEU A 102 ALA A 126 1CY A 201 HOH A 307 SITE 8 AC2 36 HOH A 318 HOH A 326 HOH A 331 HOH A 338 SITE 9 AC2 36 HOH A 347 HOH A 364 HOH A 387 HOH A 401 SITE 1 AC3 4 ARG A 136 GLU B 26 ALA B 29 ARG B 146 SITE 1 AC4 5 ARG A 67 HOH A 307 HOH A 328 ARG B 67 SITE 2 AC4 5 HOH B 360 SITE 1 AC5 4 HOH A 326 ARG B 67 NDP B 202 HOH B 371 SITE 1 AC6 6 HIS A 38 HOH A 316 HOH A 344 HIS B 157 SITE 2 AC6 6 HOH B 380 HOH B 386 SITE 1 AC7 12 ILE B 5 TRP B 6 ALA B 7 ASP B 27 SITE 2 AC7 12 PHE B 31 THR B 46 LEU B 50 ILE B 94 SITE 3 AC7 12 TYR B 100 THR B 113 NDP B 202 HOH B 385 SITE 1 AC8 39 SO4 A 205 HOH A 328 TRP B 6 ALA B 7 SITE 2 AC8 39 ILE B 14 GLY B 15 ARG B 16 GLY B 18 SITE 3 AC8 39 ASP B 19 ILE B 20 GLY B 43 ARG B 44 SITE 4 AC8 39 ARG B 45 THR B 46 LEU B 65 SER B 66 SITE 5 AC8 39 ARG B 67 GLY B 80 ILE B 94 GLY B 95 SITE 6 AC8 39 GLY B 96 GLY B 97 GLN B 98 VAL B 99 SITE 7 AC8 39 TYR B 100 LEU B 102 ALA B 126 1CY B 201 SITE 8 AC8 39 HOH B 321 HOH B 330 HOH B 340 HOH B 343 SITE 9 AC8 39 HOH B 349 HOH B 360 HOH B 364 HOH B 371 SITE 10 AC8 39 HOH B 378 HOH B 401 HOH B 414 SITE 1 AC9 4 PRO B 51 ALA B 52 HOH B 307 HOH B 316 SITE 1 AD1 5 PHE B 31 ARG B 32 ARG B 60 HOH B 305 SITE 2 AD1 5 HOH B 306 SITE 1 AD2 6 HOH A 356 HIS B 38 HOH B 317 HOH B 362 SITE 2 AD2 6 HOH B 367 HOH B 413 SITE 1 AD3 5 TRP B 22 ARG B 23 LEU B 24 ASP B 27 SITE 2 AD3 5 HOH B 350 CRYST1 60.319 71.245 72.219 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016579 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013847 0.00000