HEADER ISOMERASE 15-JAN-19 6NNS TITLE XANTHOMONAS CITRI PHOSPHO-PGM IN COMPLEX WITH GLUCOSE-6-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI (STRAIN 306); SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 GENE: XANA, XAC3579; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOGLUCOMUTASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.STIERS,L.J.BEAMER REVDAT 5 11-OCT-23 6NNS 1 HETSYN REVDAT 4 29-JUL-20 6NNS 1 COMPND REMARK HETNAM SITE REVDAT 3 27-NOV-19 6NNS 1 REMARK REVDAT 2 15-MAY-19 6NNS 1 JRNL REVDAT 1 10-APR-19 6NNS 0 JRNL AUTH K.M.STIERS,A.C.GRAHAM,J.S.ZHU,D.L.JAKEMAN,J.C.NIX,L.J.BEAMER JRNL TITL STRUCTURAL AND DYNAMICAL DESCRIPTION OF THE ENZYMATIC JRNL TITL 2 REACTION OF A PHOSPHOHEXOMUTASE. JRNL REF STRUCT DYN. V. 6 24703 2019 JRNL REFN ESSN 2329-7778 JRNL PMID 31041362 JRNL DOI 10.1063/1.5092803 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 74113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5756 - 4.2939 1.00 2961 150 0.1421 0.1645 REMARK 3 2 4.2939 - 3.4088 1.00 2772 173 0.1334 0.1668 REMARK 3 3 3.4088 - 2.9780 1.00 2766 170 0.1578 0.1889 REMARK 3 4 2.9780 - 2.7058 1.00 2743 130 0.1774 0.1827 REMARK 3 5 2.7058 - 2.5119 1.00 2722 152 0.1687 0.2117 REMARK 3 6 2.5119 - 2.3638 1.00 2733 158 0.1659 0.2117 REMARK 3 7 2.3638 - 2.2455 1.00 2726 128 0.1699 0.2327 REMARK 3 8 2.2455 - 2.1477 1.00 2723 138 0.1694 0.2340 REMARK 3 9 2.1477 - 2.0651 1.00 2675 159 0.1685 0.2006 REMARK 3 10 2.0651 - 1.9938 1.00 2700 138 0.1734 0.1849 REMARK 3 11 1.9938 - 1.9315 1.00 2713 137 0.1767 0.2280 REMARK 3 12 1.9315 - 1.8762 1.00 2692 138 0.1837 0.2247 REMARK 3 13 1.8762 - 1.8269 1.00 2685 148 0.1883 0.2016 REMARK 3 14 1.8269 - 1.7823 1.00 2713 136 0.1841 0.2306 REMARK 3 15 1.7823 - 1.7418 1.00 2672 138 0.1793 0.2032 REMARK 3 16 1.7418 - 1.7047 1.00 2668 139 0.1764 0.2309 REMARK 3 17 1.7047 - 1.6706 1.00 2721 129 0.1810 0.1946 REMARK 3 18 1.6706 - 1.6391 1.00 2691 150 0.1880 0.2145 REMARK 3 19 1.6391 - 1.6098 1.00 2663 121 0.1991 0.2508 REMARK 3 20 1.6098 - 1.5825 1.00 2681 155 0.2079 0.2491 REMARK 3 21 1.5825 - 1.5570 1.00 2641 134 0.2324 0.2782 REMARK 3 22 1.5570 - 1.5330 1.00 2720 146 0.2576 0.2893 REMARK 3 23 1.5330 - 1.5105 1.00 2642 123 0.2989 0.3612 REMARK 3 24 1.5105 - 1.4892 1.00 2686 132 0.3450 0.3681 REMARK 3 25 1.4892 - 1.4691 0.99 2649 146 0.4050 0.3924 REMARK 3 26 1.4691 - 1.4500 0.99 2663 124 0.4545 0.5152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3547 REMARK 3 ANGLE : 0.844 4818 REMARK 3 CHIRALITY : 0.079 531 REMARK 3 PLANARITY : 0.006 638 REMARK 3 DIHEDRAL : 7.658 2093 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4276 37.6077 14.9669 REMARK 3 T TENSOR REMARK 3 T11: 0.1062 T22: 0.0977 REMARK 3 T33: 0.0956 T12: -0.0039 REMARK 3 T13: 0.0048 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.4361 L22: 0.6052 REMARK 3 L33: 0.9873 L12: -0.2281 REMARK 3 L13: -0.1078 L23: 0.4039 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: 0.0097 S13: -0.0208 REMARK 3 S21: -0.0163 S22: -0.0245 S23: 0.0450 REMARK 3 S31: 0.0839 S32: -0.0478 S33: -0.0255 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8067 45.4306 37.2464 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.0968 REMARK 3 T33: 0.0878 T12: 0.0056 REMARK 3 T13: -0.0027 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.3315 L22: 0.4752 REMARK 3 L33: 0.7228 L12: -0.2415 REMARK 3 L13: -0.3961 L23: -0.0117 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.0269 S13: -0.0487 REMARK 3 S21: 0.0310 S22: 0.0171 S23: 0.0129 REMARK 3 S31: 0.0931 S32: 0.0580 S33: 0.0023 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0241 56.1360 32.1545 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.1052 REMARK 3 T33: 0.0954 T12: -0.0005 REMARK 3 T13: 0.0050 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0716 L22: 0.0700 REMARK 3 L33: 0.3342 L12: -0.0132 REMARK 3 L13: 0.1270 L23: -0.1777 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0833 S13: 0.0339 REMARK 3 S21: 0.0322 S22: -0.0100 S23: -0.0414 REMARK 3 S31: -0.0598 S32: 0.0021 S33: -0.0023 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0846 63.2494 20.9449 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.1040 REMARK 3 T33: 0.1144 T12: 0.0012 REMARK 3 T13: -0.0025 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.4280 L22: 0.2861 REMARK 3 L33: 0.2835 L12: -0.0444 REMARK 3 L13: 0.1529 L23: -0.3698 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -0.0003 S13: -0.0070 REMARK 3 S21: -0.0476 S22: -0.0057 S23: -0.0534 REMARK 3 S31: -0.0365 S32: 0.0198 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7698 59.8837 29.0703 REMARK 3 T TENSOR REMARK 3 T11: 0.0961 T22: 0.0811 REMARK 3 T33: 0.1001 T12: 0.0025 REMARK 3 T13: 0.0074 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.0431 L22: -0.0075 REMARK 3 L33: 0.1595 L12: -0.1072 REMARK 3 L13: -0.0595 L23: -0.2091 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: 0.0131 S13: -0.0639 REMARK 3 S21: -0.0195 S22: 0.0109 S23: -0.0285 REMARK 3 S31: -0.0302 S32: 0.0289 S33: -0.0100 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 448 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0972 63.6900 10.1129 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.0999 REMARK 3 T33: 0.1130 T12: 0.0007 REMARK 3 T13: 0.0005 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.4765 L22: 0.4040 REMARK 3 L33: 0.4875 L12: 0.2733 REMARK 3 L13: 0.1241 L23: 0.0588 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.0797 S13: -0.0708 REMARK 3 S21: -0.0391 S22: 0.0153 S23: -0.0126 REMARK 3 S31: -0.0055 S32: -0.0213 S33: 0.0031 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NNS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73075 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 46.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 1.72400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BMN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 0.2M MGCL, 0.1M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.86000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.24000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.24000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.86000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 308 O HOH A 601 1.69 REMARK 500 NH1 ARG A 146 O HOH A 602 2.07 REMARK 500 O HOH A 1006 O HOH A 1043 2.13 REMARK 500 O HOH A 628 O HOH A 1149 2.14 REMARK 500 O HOH A 698 O HOH A 978 2.14 REMARK 500 O HOH A 813 O HOH A 1159 2.15 REMARK 500 O HOH A 911 O HOH A 1056 2.16 REMARK 500 O HOH A 920 O HOH A 1082 2.16 REMARK 500 O HOH A 1023 O HOH A 1103 2.18 REMARK 500 O HOH A 932 O HOH A 1111 2.19 REMARK 500 O HOH A 1005 O HOH A 1216 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 36 -173.87 -68.96 REMARK 500 SEP A 97 -126.91 51.51 REMARK 500 SEP A 97 -129.48 56.37 REMARK 500 PRO A 100 171.61 -58.15 REMARK 500 ARG A 110 -149.35 -107.54 REMARK 500 ASN A 211 88.15 -157.86 REMARK 500 THR A 282 -40.53 -135.42 REMARK 500 PHE A 330 45.44 -92.13 REMARK 500 TYR A 332 19.00 58.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1247 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SEP A 97 O3P REMARK 620 2 ASP A 237 OD2 90.3 REMARK 620 3 ASP A 239 OD1 84.6 98.2 REMARK 620 4 ASP A 239 OD2 84.3 141.8 43.7 REMARK 620 5 ASP A 241 OD1 171.6 97.9 92.5 88.2 REMARK 620 6 HOH A 616 O 83.0 165.1 94.4 50.9 89.4 REMARK 620 7 HOH A 618 O 89.2 86.8 172.0 130.7 92.9 79.8 REMARK 620 8 HOH A 808 O 7.4 83.1 87.3 91.0 179.0 89.6 87.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NN1 RELATED DB: PDB REMARK 900 RELATED ID: 6NN2 RELATED DB: PDB REMARK 900 RELATED ID: 6NNO RELATED DB: PDB REMARK 900 RELATED ID: 6NNN RELATED DB: PDB REMARK 900 RELATED ID: 6NNP RELATED DB: PDB DBREF 6NNS A 1 448 UNP Q8PGN7 Q8PGN7_XANAC 3 450 SEQADV 6NNS MET A -19 UNP Q8PGN7 INITIATING METHIONINE SEQADV 6NNS GLY A -18 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS SER A -17 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS SER A -16 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS HIS A -15 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS HIS A -14 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS HIS A -13 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS HIS A -12 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS HIS A -11 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS HIS A -10 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS SER A -9 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS SER A -8 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS GLU A -7 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS ASN A -6 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS LEU A -5 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS TYR A -4 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS PHE A -3 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS GLN A -2 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS SER A -1 UNP Q8PGN7 EXPRESSION TAG SEQADV 6NNS HIS A 0 UNP Q8PGN7 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 A 468 ASN LEU TYR PHE GLN SER HIS MET THR LEU PRO ALA PHE SEQRES 3 A 468 LYS ALA TYR ASP ILE ARG GLY ARG VAL PRO ASP GLU LEU SEQRES 4 A 468 ASN GLU ASP LEU ALA ARG ARG ILE GLY VAL ALA LEU ALA SEQRES 5 A 468 ALA GLN LEU ASP GLN GLY PRO VAL VAL LEU GLY HIS ASP SEQRES 6 A 468 VAL ARG LEU ALA SER PRO ALA LEU GLN GLU ALA LEU SER SEQRES 7 A 468 ALA GLY LEU ARG ALA SER GLY ARG ASP VAL ILE ASP ILE SEQRES 8 A 468 GLY LEU CYS GLY THR GLU GLU VAL TYR PHE GLN THR ASP SEQRES 9 A 468 TYR LEU LYS ALA ALA GLY GLY VAL MET VAL THR ALA SEP SEQRES 10 A 468 HIS ASN PRO MET ASP TYR ASN GLY MET LYS LEU VAL ARG SEQRES 11 A 468 GLU GLN ALA ARG PRO ILE SER SER ASP THR GLY LEU PHE SEQRES 12 A 468 ALA ILE ARG ASP THR VAL ALA ALA ASP THR ALA ALA PRO SEQRES 13 A 468 GLY GLU PRO THR ALA SER GLU GLN SER ARG THR ASP LYS SEQRES 14 A 468 THR ALA TYR LEU GLU HIS LEU LEU SER TYR VAL ASP ARG SEQRES 15 A 468 SER THR LEU LYS PRO LEU LYS LEU VAL VAL ASN ALA GLY SEQRES 16 A 468 ASN GLY GLY ALA GLY LEU ILE VAL ASP LEU LEU ALA PRO SEQRES 17 A 468 HIS LEU PRO PHE GLU PHE VAL ARG VAL PHE HIS GLU PRO SEQRES 18 A 468 ASP GLY ASN PHE PRO ASN GLY ILE PRO ASN PRO LEU LEU SEQRES 19 A 468 PRO GLU ASN ARG ASP ALA THR ALA LYS ALA VAL LYS ASP SEQRES 20 A 468 ASN GLY ALA ASP PHE GLY ILE ALA TRP ASP GLY ASP PHE SEQRES 21 A 468 ASP ARG CYS PHE PHE PHE ASP HIS THR GLY ARG PHE ILE SEQRES 22 A 468 GLU GLY TYR TYR LEU VAL GLY LEU LEU ALA GLN ALA ILE SEQRES 23 A 468 LEU ALA LYS GLN PRO GLY GLY LYS VAL VAL HIS ASP PRO SEQRES 24 A 468 ARG LEU THR TRP ASN THR VAL GLU GLN VAL GLU GLU ALA SEQRES 25 A 468 GLY GLY ILE PRO VAL LEU CYS LYS SER GLY HIS ALA PHE SEQRES 26 A 468 ILE LYS GLU LYS MET ARG SER GLU ASN ALA VAL TYR GLY SEQRES 27 A 468 GLY GLU MET SER ALA HIS HIS TYR PHE ARG GLU PHE ALA SEQRES 28 A 468 TYR ALA ASP SER GLY MET ILE PRO TRP LEU LEU ILE ALA SEQRES 29 A 468 GLU LEU VAL SER GLN SER GLY ARG SER LEU ALA ASP LEU SEQRES 30 A 468 VAL GLU ALA ARG MET GLN LYS PHE PRO CYS SER GLY GLU SEQRES 31 A 468 ILE ASN PHE LYS VAL ALA ASP ALA LYS ALA SER VAL ALA SEQRES 32 A 468 ARG VAL MET GLU HIS TYR ALA SER LEU SER PRO GLU LEU SEQRES 33 A 468 ASP TYR THR ASP GLY ILE SER ALA ASP PHE GLY GLN TRP SEQRES 34 A 468 ARG PHE ASN LEU ARG SER SER ASN THR GLU PRO LEU LEU SEQRES 35 A 468 ARG LEU ASN VAL GLU THR ARG GLY ASP ALA ALA LEU LEU SEQRES 36 A 468 GLU THR ARG THR GLN GLU ILE SER ASN LEU LEU ARG GLY MODRES 6NNS SEP A 97 SER MODIFIED RESIDUE HET SEP A 97 16 HET CA A 501 1 HET G6P A 502 16 HETNAM SEP PHOSPHOSERINE HETNAM CA CALCIUM ION HETNAM G6P 6-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETSYN SEP PHOSPHONOSERINE HETSYN G6P ALPHA-D-GLUCOSE-6-PHOSPHATE; 6-O-PHOSPHONO-ALPHA-D- HETSYN 2 G6P GLUCOSE; 6-O-PHOSPHONO-D-GLUCOSE; 6-O-PHOSPHONO- HETSYN 3 G6P GLUCOSE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 CA CA 2+ FORMUL 3 G6P C6 H13 O9 P FORMUL 4 HOH *647(H2 O) HELIX 1 AA1 ASN A 20 LEU A 35 1 16 HELIX 2 AA2 ALA A 49 SER A 64 1 16 HELIX 3 AA3 GLY A 75 LEU A 86 1 12 HELIX 4 AA4 ARG A 110 ARG A 114 5 5 HELIX 5 AA5 SER A 117 THR A 120 5 4 HELIX 6 AA6 GLY A 121 ASP A 132 1 12 HELIX 7 AA7 LYS A 149 SER A 158 1 10 HELIX 8 AA8 TYR A 159 VAL A 160 5 2 HELIX 9 AA9 ASP A 161 LEU A 165 5 5 HELIX 10 AB1 GLY A 178 ALA A 187 1 10 HELIX 11 AB2 PRO A 188 LEU A 190 5 3 HELIX 12 AB3 LEU A 214 GLY A 229 1 16 HELIX 13 AB4 GLU A 254 GLN A 270 1 17 HELIX 14 AB5 THR A 282 ALA A 292 1 11 HELIX 15 AB6 GLY A 302 ASN A 314 1 13 HELIX 16 AB7 GLU A 329 ALA A 331 5 3 HELIX 17 AB8 MET A 337 GLY A 351 1 15 HELIX 18 AB9 SER A 353 PHE A 365 1 13 HELIX 19 AC1 ASP A 377 ALA A 390 1 14 HELIX 20 AC2 SER A 391 SER A 393 5 3 HELIX 21 AC3 ASP A 431 GLY A 448 1 18 SHEET 1 AA1 6 ILE A 11 ARG A 14 0 SHEET 2 AA1 6 TYR A 103 VAL A 109 -1 O MET A 106 N ILE A 11 SHEET 3 AA1 6 GLY A 90 VAL A 94 -1 N GLY A 91 O VAL A 109 SHEET 4 AA1 6 VAL A 40 HIS A 44 1 N GLY A 43 O VAL A 94 SHEET 5 AA1 6 VAL A 68 LEU A 73 1 O ILE A 69 N LEU A 42 SHEET 6 AA1 6 GLU A 143 SER A 145 1 O GLN A 144 N ASP A 70 SHEET 1 AA2 4 GLU A 193 VAL A 197 0 SHEET 2 AA2 4 LYS A 169 ASN A 173 1 N VAL A 172 O VAL A 197 SHEET 3 AA2 4 PHE A 232 TRP A 236 1 O ILE A 234 N VAL A 171 SHEET 4 AA2 4 CYS A 243 PHE A 246 -1 O PHE A 246 N GLY A 233 SHEET 1 AA3 4 ILE A 295 LEU A 298 0 SHEET 2 AA3 4 LYS A 274 HIS A 277 1 N VAL A 275 O VAL A 297 SHEET 3 AA3 4 TYR A 317 GLU A 320 1 O GLY A 319 N VAL A 276 SHEET 4 AA3 4 HIS A 324 PHE A 327 -1 O TYR A 326 N GLY A 318 SHEET 1 AA4 5 ILE A 371 PHE A 373 0 SHEET 2 AA4 5 LEU A 422 THR A 428 -1 O LEU A 424 N ILE A 371 SHEET 3 AA4 5 TRP A 409 SER A 415 -1 N ARG A 414 O ARG A 423 SHEET 4 AA4 5 ILE A 402 ASP A 405 -1 N ILE A 402 O LEU A 413 SHEET 5 AA4 5 GLU A 395 ASP A 397 -1 N ASP A 397 O SER A 403 LINK C ALA A 96 N ASEP A 97 1555 1555 1.33 LINK C ALA A 96 N BSEP A 97 1555 1555 1.33 LINK C ASEP A 97 N HIS A 98 1555 1555 1.33 LINK C BSEP A 97 N HIS A 98 1555 1555 1.33 LINK O3PASEP A 97 CA CA A 501 1555 1555 2.22 LINK OD2 ASP A 237 CA CA A 501 1555 1555 2.01 LINK OD1 ASP A 239 CA CA A 501 1555 1555 2.11 LINK OD2 ASP A 239 CA CA A 501 1555 1555 3.14 LINK OD1 ASP A 241 CA CA A 501 1555 1555 2.04 LINK CA CA A 501 O HOH A 616 1555 1555 2.12 LINK CA CA A 501 O HOH A 618 1555 1555 2.23 LINK CA CA A 501 O BHOH A 808 1555 1555 2.17 CISPEP 1 VAL A 15 PRO A 16 0 3.74 CRYST1 43.720 54.520 172.480 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005798 0.00000