HEADER LIGASE 15-JAN-19 6NO1 TITLE ADP BOUND TO K46BE MUTANT ATP-GRASP FOLD OF BLASTOCYSTIS HOMINIS TITLE 2 SUCCINYL-COA SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 16-253; COMPND 5 SYNONYM: SUCCINYL-COA SYNTHETASE BETA CHAIN,SCS-BETA; COMPND 6 EC: 6.2.1.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLASTOCYSTIS SP. SUBTYPE 1 (STRAIN ATCC 50177 / SOURCE 3 NANDII); SOURCE 4 ORGANISM_TAXID: 478820; SOURCE 5 STRAIN: ATCC 50177 / NANDII; SOURCE 6 GENE: SCSB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MUTANT, COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HUANG,M.E.FRASER REVDAT 3 08-JAN-20 6NO1 1 REMARK REVDAT 2 13-NOV-19 6NO1 1 JRNL REVDAT 1 17-JUL-19 6NO1 0 JRNL AUTH J.HUANG,V.H.NGUYEN,K.A.HAMBLIN,R.MAYTUM,M.VAN DER GIEZEN, JRNL AUTH 2 M.E.FRASER JRNL TITL ATP-SPECIFICITY OF SUCCINYL-COA SYNTHETASE FROM BLASTOCYSTIS JRNL TITL 2 HOMINIS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 647 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31282474 JRNL DOI 10.1107/S2059798319007976 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3381 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.2629 - 4.6663 1.00 2963 145 0.2124 0.2044 REMARK 3 2 4.6663 - 3.7038 1.00 2842 145 0.2301 0.2613 REMARK 3 3 3.7038 - 3.2356 1.00 2788 140 0.2883 0.4019 REMARK 3 4 3.2356 - 2.9398 1.00 2771 149 0.3196 0.3352 REMARK 3 5 2.9398 - 2.7291 1.00 2738 159 0.3556 0.3621 REMARK 3 6 2.7291 - 2.5682 1.00 2746 142 0.3956 0.4191 REMARK 3 7 2.5682 - 2.4395 1.00 2770 138 0.4395 0.4629 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2609 38.4829 -11.6779 REMARK 3 T TENSOR REMARK 3 T11: 0.4954 T22: 0.7064 REMARK 3 T33: 0.6532 T12: -0.0236 REMARK 3 T13: 0.0739 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 3.1276 L22: 2.4424 REMARK 3 L33: 1.9609 L12: 0.1733 REMARK 3 L13: -0.0621 L23: -0.6179 REMARK 3 S TENSOR REMARK 3 S11: 0.5321 S12: 0.0229 S13: 0.4985 REMARK 3 S21: -0.2254 S22: -0.2164 S23: 0.6068 REMARK 3 S31: -0.1010 S32: -0.9226 S33: 0.0033 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9583 32.1432 10.4723 REMARK 3 T TENSOR REMARK 3 T11: 0.7751 T22: 1.0155 REMARK 3 T33: 0.5493 T12: -0.0201 REMARK 3 T13: 0.0643 T23: -0.0984 REMARK 3 L TENSOR REMARK 3 L11: 0.9326 L22: 2.0375 REMARK 3 L33: 1.6230 L12: 0.1443 REMARK 3 L13: -1.1422 L23: -0.0086 REMARK 3 S TENSOR REMARK 3 S11: 0.1498 S12: -1.2829 S13: 0.0395 REMARK 3 S21: 0.6239 S22: 0.0300 S23: -0.0003 REMARK 3 S31: -0.0700 S32: 0.6431 S33: 0.0781 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0396 35.8665 -25.8372 REMARK 3 T TENSOR REMARK 3 T11: 0.4643 T22: 0.3543 REMARK 3 T33: 0.5246 T12: 0.1679 REMARK 3 T13: 0.1261 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 2.6322 L22: 0.5344 REMARK 3 L33: 0.4080 L12: 1.0635 REMARK 3 L13: 0.2004 L23: 0.2097 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: -0.3194 S13: 0.2213 REMARK 3 S21: 0.0361 S22: -0.2404 S23: -0.1973 REMARK 3 S31: -0.0501 S32: -0.0561 S33: -0.0837 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3102 36.8572 -10.6563 REMARK 3 T TENSOR REMARK 3 T11: 0.4886 T22: 0.5488 REMARK 3 T33: 0.5087 T12: 0.0437 REMARK 3 T13: -0.0101 T23: -0.0750 REMARK 3 L TENSOR REMARK 3 L11: 1.8135 L22: 0.2413 REMARK 3 L33: 0.6943 L12: 0.2592 REMARK 3 L13: -0.1796 L23: 0.2678 REMARK 3 S TENSOR REMARK 3 S11: 0.3564 S12: -0.3389 S13: 0.4083 REMARK 3 S21: 0.0781 S22: -0.2778 S23: 0.1125 REMARK 3 S31: -0.0804 S32: 0.1382 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5379 19.9297 -32.6121 REMARK 3 T TENSOR REMARK 3 T11: 0.5802 T22: 1.0586 REMARK 3 T33: 0.6175 T12: 0.1775 REMARK 3 T13: -0.0150 T23: -0.2313 REMARK 3 L TENSOR REMARK 3 L11: 1.4367 L22: 1.3621 REMARK 3 L33: 1.4001 L12: -1.2239 REMARK 3 L13: -0.3898 L23: 0.1805 REMARK 3 S TENSOR REMARK 3 S11: 0.2534 S12: 0.8501 S13: -0.4589 REMARK 3 S21: -0.1411 S22: -0.4417 S23: 0.0365 REMARK 3 S31: 0.4755 S32: 0.0076 S33: 0.0055 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NO1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20700 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 80.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.88800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% W/V PEG3350, 100 MM MES, PH 5.9, REMARK 280 125 MM AMMONIUM TARTRATE, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.06450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.34050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.06450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.34050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 234 REMARK 465 LYS A 235 REMARK 465 ASP A 236 REMARK 465 ALA A 237 REMARK 465 ALA A 238 REMARK 465 PHE A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 GLU A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ILE B 3 REMARK 465 HIS B 4 REMARK 465 LEU B 54 REMARK 465 ALA B 55 REMARK 465 GLY B 56 REMARK 465 GLY B 57 REMARK 465 ARG B 58 REMARK 465 GLY B 59 REMARK 465 LYS B 60 REMARK 465 GLY B 61 REMARK 465 HIS B 62 REMARK 465 TRP B 63 REMARK 465 GLU B 64 REMARK 465 HIS B 65 REMARK 465 GLY B 66 REMARK 465 MET B 67 REMARK 465 GLN B 68 REMARK 465 GLY B 69 REMARK 465 ILE B 93 REMARK 465 THR B 94 REMARK 465 LYS B 95 REMARK 465 GLN B 96 REMARK 465 THR B 97 REMARK 465 GLY B 98 REMARK 465 ALA B 99 REMARK 465 LYS B 100 REMARK 465 GLY B 101 REMARK 465 ASP B 234 REMARK 465 LYS B 235 REMARK 465 ASP B 236 REMARK 465 ALA B 237 REMARK 465 ALA B 238 REMARK 465 PHE B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 GLU B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY B 89 O CYS B 104 1.59 REMARK 500 OD1 ASP A 220 O HOH A 401 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 55 145.03 179.72 REMARK 500 ALA A 99 15.36 -166.56 REMARK 500 ASP A 126 94.61 -66.54 REMARK 500 SER A 138 44.57 -79.71 REMARK 500 MET A 142 -44.67 -166.39 REMARK 500 CYS A 151 82.21 -155.06 REMARK 500 LYS A 163 -76.59 -79.74 REMARK 500 GLU A 181 148.00 -174.02 REMARK 500 MET B 87 -65.96 -93.97 REMARK 500 LYS B 91 177.47 -59.56 REMARK 500 ASP B 126 94.67 -60.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 210 O REMARK 620 2 ASP A 228 OD2 91.0 REMARK 620 3 ADP A 301 O3B 151.0 117.5 REMARK 620 4 ADP A 301 O2A 103.1 100.1 68.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 216 OE1 REMARK 620 2 ASP A 220 OD1 93.1 REMARK 620 3 ASP A 220 OD2 104.5 60.7 REMARK 620 4 ASP B 220 OD1 141.3 99.4 113.6 REMARK 620 5 ASP B 220 OD2 108.7 157.3 116.9 59.7 REMARK 620 6 HOH A 401 O 95.2 52.9 111.2 65.4 117.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 DBREF 6NO1 A 2 239 UNP B3FHP0 SUCB_BLAHN 16 253 DBREF 6NO1 B 2 239 UNP B3FHP0 SUCB_BLAHN 16 253 SEQADV 6NO1 MET A 1 UNP B3FHP0 INITIATING METHIONINE SEQADV 6NO1 GLU A 46 UNP B3FHP0 LYS 60 ENGINEERED MUTATION SEQADV 6NO1 GLY A 240 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 LEU A 241 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 GLU A 242 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS A 243 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS A 244 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS A 245 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS A 246 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS A 247 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS A 248 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS A 249 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS A 250 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 MET B 1 UNP B3FHP0 INITIATING METHIONINE SEQADV 6NO1 GLU B 46 UNP B3FHP0 LYS 60 ENGINEERED MUTATION SEQADV 6NO1 GLY B 240 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 LEU B 241 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 GLU B 242 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS B 243 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS B 244 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS B 245 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS B 246 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS B 247 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS B 248 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS B 249 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO1 HIS B 250 UNP B3FHP0 EXPRESSION TAG SEQRES 1 A 250 MET ASN ILE HIS GLU TRP GLN SER LYS GLN LEU ILE GLN SEQRES 2 A 250 LYS TYR GLY GLY ARG ALA GLN SER GLY GLU VAL ALA PHE SEQRES 3 A 250 SER PRO GLU ARG SER ARG ASP ILE ALA LYS LYS LEU TRP SEQRES 4 A 250 ASN GLN PHE PRO GLY CYS GLU PHE VAL VAL LYS ALA GLN SEQRES 5 A 250 VAL LEU ALA GLY GLY ARG GLY LYS GLY HIS TRP GLU HIS SEQRES 6 A 250 GLY MET GLN GLY GLY VAL LYS LEU ALA LYS THR PRO GLU SEQRES 7 A 250 GLU VAL TYR GLU ILE ALA ASN GLU MET ILE GLY HIS LYS SEQRES 8 A 250 LEU ILE THR LYS GLN THR GLY ALA LYS GLY ILE ASN CYS SEQRES 9 A 250 ASN LYS VAL MET VAL CYS GLY ALA VAL LYS ILE LEU LYS SEQRES 10 A 250 GLU PHE TYR LEU SER ILE LEU LEU ASP ARG ALA MET GLY SEQRES 11 A 250 CYS PRO VAL ILE ILE ALA THR SER GLN GLY GLY MET GLY SEQRES 12 A 250 ILE GLU GLU VAL ALA GLN LYS CYS PRO GLU CYS LEU PHE SEQRES 13 A 250 LYS VAL PRO ILE SER VAL LYS ASN GLY PRO THR ASN GLU SEQRES 14 A 250 GLN LEU VAL LYS LEU ALA LYS ASP LEU GLY LEU GLU GLY SEQRES 15 A 250 ASP LEU VAL GLN ASP CYS VAL ASP ASN VAL LYS ALA LEU SEQRES 16 A 250 TYR GLN VAL PHE ASP LYS CYS ASP SER THR MET VAL GLU SEQRES 17 A 250 ILE ASN PRO LEU GLY VAL ILE GLU THR PRO THR ASP GLU SEQRES 18 A 250 LYS VAL ILE CYS CYS LEU ASP ALA LYS ILE ALA PHE ASP SEQRES 19 A 250 LYS ASP ALA ALA PHE GLY LEU GLU HIS HIS HIS HIS HIS SEQRES 20 A 250 HIS HIS HIS SEQRES 1 B 250 MET ASN ILE HIS GLU TRP GLN SER LYS GLN LEU ILE GLN SEQRES 2 B 250 LYS TYR GLY GLY ARG ALA GLN SER GLY GLU VAL ALA PHE SEQRES 3 B 250 SER PRO GLU ARG SER ARG ASP ILE ALA LYS LYS LEU TRP SEQRES 4 B 250 ASN GLN PHE PRO GLY CYS GLU PHE VAL VAL LYS ALA GLN SEQRES 5 B 250 VAL LEU ALA GLY GLY ARG GLY LYS GLY HIS TRP GLU HIS SEQRES 6 B 250 GLY MET GLN GLY GLY VAL LYS LEU ALA LYS THR PRO GLU SEQRES 7 B 250 GLU VAL TYR GLU ILE ALA ASN GLU MET ILE GLY HIS LYS SEQRES 8 B 250 LEU ILE THR LYS GLN THR GLY ALA LYS GLY ILE ASN CYS SEQRES 9 B 250 ASN LYS VAL MET VAL CYS GLY ALA VAL LYS ILE LEU LYS SEQRES 10 B 250 GLU PHE TYR LEU SER ILE LEU LEU ASP ARG ALA MET GLY SEQRES 11 B 250 CYS PRO VAL ILE ILE ALA THR SER GLN GLY GLY MET GLY SEQRES 12 B 250 ILE GLU GLU VAL ALA GLN LYS CYS PRO GLU CYS LEU PHE SEQRES 13 B 250 LYS VAL PRO ILE SER VAL LYS ASN GLY PRO THR ASN GLU SEQRES 14 B 250 GLN LEU VAL LYS LEU ALA LYS ASP LEU GLY LEU GLU GLY SEQRES 15 B 250 ASP LEU VAL GLN ASP CYS VAL ASP ASN VAL LYS ALA LEU SEQRES 16 B 250 TYR GLN VAL PHE ASP LYS CYS ASP SER THR MET VAL GLU SEQRES 17 B 250 ILE ASN PRO LEU GLY VAL ILE GLU THR PRO THR ASP GLU SEQRES 18 B 250 LYS VAL ILE CYS CYS LEU ASP ALA LYS ILE ALA PHE ASP SEQRES 19 B 250 LYS ASP ALA ALA PHE GLY LEU GLU HIS HIS HIS HIS HIS SEQRES 20 B 250 HIS HIS HIS HET ADP A 301 42 HET MG A 302 1 HET MG A 303 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *20(H2 O) HELIX 1 AA1 HIS A 4 TYR A 15 1 12 HELIX 2 AA2 SER A 27 PHE A 42 1 16 HELIX 3 AA3 THR A 76 ILE A 88 1 13 HELIX 4 AA4 GLY A 143 CYS A 151 1 9 HELIX 5 AA5 PRO A 152 LEU A 155 5 4 HELIX 6 AA6 THR A 167 LEU A 178 1 12 HELIX 7 AA7 GLY A 182 CYS A 202 1 21 HELIX 8 AA8 TRP B 6 TYR B 15 1 10 HELIX 9 AA9 SER B 27 PHE B 42 1 16 HELIX 10 AB1 THR B 76 ILE B 88 1 13 HELIX 11 AB2 GLY B 143 CYS B 151 1 9 HELIX 12 AB3 THR B 167 ASP B 177 1 11 HELIX 13 AB4 GLY B 182 LYS B 201 1 20 SHEET 1 AA1 4 GLU A 23 ALA A 25 0 SHEET 2 AA1 4 VAL A 107 GLY A 111 -1 O VAL A 109 N GLU A 23 SHEET 3 AA1 4 PHE A 47 ALA A 51 -1 N LYS A 50 O MET A 108 SHEET 4 AA1 4 VAL A 71 ALA A 74 -1 O ALA A 74 N PHE A 47 SHEET 1 AA2 3 HIS A 62 TRP A 63 0 SHEET 2 AA2 3 LYS A 91 ILE A 93 -1 O ILE A 93 N HIS A 62 SHEET 3 AA2 3 ILE A 102 ASN A 103 -1 O ILE A 102 N LEU A 92 SHEET 1 AA3 5 PHE A 156 PRO A 159 0 SHEET 2 AA3 5 CYS A 131 THR A 137 -1 N ALA A 136 O PHE A 156 SHEET 3 AA3 5 ILE A 115 ASP A 126 -1 N LEU A 124 O VAL A 133 SHEET 4 AA3 5 MET A 206 GLU A 216 -1 O ILE A 209 N LEU A 121 SHEET 5 AA3 5 LYS A 222 CYS A 226 -1 O CYS A 225 N GLY A 213 SHEET 1 AA4 5 PHE A 156 PRO A 159 0 SHEET 2 AA4 5 CYS A 131 THR A 137 -1 N ALA A 136 O PHE A 156 SHEET 3 AA4 5 ILE A 115 ASP A 126 -1 N LEU A 124 O VAL A 133 SHEET 4 AA4 5 MET A 206 GLU A 216 -1 O ILE A 209 N LEU A 121 SHEET 5 AA4 5 LYS A 230 ALA A 232 -1 O LYS A 230 N GLU A 208 SHEET 1 AA5 4 GLU B 23 ALA B 25 0 SHEET 2 AA5 4 VAL B 107 GLY B 111 -1 O VAL B 107 N ALA B 25 SHEET 3 AA5 4 PHE B 47 ALA B 51 -1 N VAL B 48 O CYS B 110 SHEET 4 AA5 4 VAL B 71 ALA B 74 -1 O ALA B 74 N PHE B 47 SHEET 1 AA6 5 PHE B 156 PRO B 159 0 SHEET 2 AA6 5 CYS B 131 THR B 137 -1 N ALA B 136 O PHE B 156 SHEET 3 AA6 5 LYS B 114 ASP B 126 -1 N TYR B 120 O THR B 137 SHEET 4 AA6 5 MET B 206 GLU B 216 -1 O LEU B 212 N PHE B 119 SHEET 5 AA6 5 LYS B 222 CYS B 226 -1 O VAL B 223 N ILE B 215 SHEET 1 AA7 5 PHE B 156 PRO B 159 0 SHEET 2 AA7 5 CYS B 131 THR B 137 -1 N ALA B 136 O PHE B 156 SHEET 3 AA7 5 LYS B 114 ASP B 126 -1 N TYR B 120 O THR B 137 SHEET 4 AA7 5 MET B 206 GLU B 216 -1 O LEU B 212 N PHE B 119 SHEET 5 AA7 5 LYS B 230 ALA B 232 -1 O LYS B 230 N GLU B 208 SSBOND 1 CYS A 151 CYS A 154 1555 1555 2.03 SSBOND 2 CYS B 151 CYS B 154 1555 1555 2.03 LINK O ASN A 210 MG MG A 303 1555 1555 2.15 LINK OE1 GLU A 216 MG MG A 302 1555 1555 2.24 LINK OD1 ASP A 220 MG MG A 302 1555 1555 2.15 LINK OD2 ASP A 220 MG MG A 302 1555 1555 2.18 LINK OD2 ASP A 228 MG MG A 303 1555 1555 2.14 LINK OD1 ASP B 220 MG MG A 302 1555 1555 2.16 LINK OD2 ASP B 220 MG MG A 302 1555 1555 2.23 LINK O3B ADP A 301 MG MG A 303 1555 1555 2.22 LINK O2A ADP A 301 MG MG A 303 1555 1555 2.40 LINK MG MG A 302 O HOH A 401 1555 1555 2.08 CISPEP 1 ASN A 210 PRO A 211 0 2.86 CISPEP 2 ASN B 210 PRO B 211 0 1.78 SITE 1 AC1 15 GLN A 20 VAL A 48 LYS A 50 GLY A 57 SITE 2 AC1 15 ARG A 58 GLY A 59 VAL A 71 GLY A 111 SITE 3 AC1 15 VAL A 113 ILE A 115 GLU A 118 ASN A 210 SITE 4 AC1 15 PRO A 211 ASP A 228 MG A 303 SITE 1 AC2 4 GLU A 216 ASP A 220 HOH A 401 ASP B 220 SITE 1 AC3 3 ASN A 210 ASP A 228 ADP A 301 CRYST1 80.129 96.681 69.235 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014444 0.00000