HEADER LIGASE 15-JAN-19 6NO2 TITLE ADP BOUND TO K114BD MUTANT ATP-GRASP FOLD OF BLASTOCYSTIS HOMINIS TITLE 2 SUCCINYL-COA SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 16-253; COMPND 5 SYNONYM: SUCCINYL-COA SYNTHETASE BETA CHAIN,SCS-BETA; COMPND 6 EC: 6.2.1.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLASTOCYSTIS SP. SUBTYPE 1 (STRAIN ATCC 50177 / SOURCE 3 NANDII); SOURCE 4 ORGANISM_TAXID: 478820; SOURCE 5 STRAIN: ATCC 50177 / NANDII; SOURCE 6 GENE: SCSB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX, MUTANT, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HUANG,M.E.FRASER REVDAT 3 08-JAN-20 6NO2 1 REMARK REVDAT 2 13-NOV-19 6NO2 1 JRNL REVDAT 1 17-JUL-19 6NO2 0 JRNL AUTH J.HUANG,V.H.NGUYEN,K.A.HAMBLIN,R.MAYTUM,M.VAN DER GIEZEN, JRNL AUTH 2 M.E.FRASER JRNL TITL ATP-SPECIFICITY OF SUCCINYL-COA SYNTHETASE FROM BLASTOCYSTIS JRNL TITL 2 HOMINIS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 647 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31282474 JRNL DOI 10.1107/S2059798319007976 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.5610 - 4.6505 1.00 2884 150 0.2092 0.2080 REMARK 3 2 4.6505 - 3.6914 1.00 2843 134 0.1917 0.2467 REMARK 3 3 3.6914 - 3.2249 1.00 2814 153 0.2206 0.2318 REMARK 3 4 3.2249 - 2.9301 1.00 2826 147 0.2224 0.2652 REMARK 3 5 2.9301 - 2.7200 0.99 2793 152 0.2370 0.2825 REMARK 3 6 2.7200 - 2.5597 1.00 2796 135 0.2407 0.2547 REMARK 3 7 2.5597 - 2.4315 1.00 2809 138 0.2496 0.3086 REMARK 3 8 2.4315 - 2.3256 1.00 2829 148 0.2498 0.3248 REMARK 3 9 2.3256 - 2.2361 1.00 2772 148 0.2609 0.2956 REMARK 3 10 2.2361 - 2.1589 0.99 2802 123 0.2751 0.2961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:115) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4579 10.7273 12.6725 REMARK 3 T TENSOR REMARK 3 T11: 0.3054 T22: 0.2911 REMARK 3 T33: 0.3083 T12: -0.0257 REMARK 3 T13: -0.0006 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 0.8350 L22: 0.3450 REMARK 3 L33: 0.4654 L12: -0.1269 REMARK 3 L13: -0.5569 L23: -0.0506 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.0741 S13: 0.2736 REMARK 3 S21: 0.0187 S22: 0.0706 S23: -0.0556 REMARK 3 S31: -0.1610 S32: 0.0313 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 116:233) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6743 5.2660 34.4822 REMARK 3 T TENSOR REMARK 3 T11: 0.3096 T22: 0.2934 REMARK 3 T33: 0.2781 T12: -0.0413 REMARK 3 T13: -0.0475 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.5265 L22: 0.6732 REMARK 3 L33: 0.6201 L12: 0.3108 REMARK 3 L13: 0.2366 L23: 0.3094 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: -0.1214 S13: -0.0414 REMARK 3 S21: 0.1416 S22: 0.0058 S23: -0.2263 REMARK 3 S31: -0.0524 S32: -0.0244 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 1:116) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9986 -18.6466 9.4777 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.2456 REMARK 3 T33: 0.3217 T12: -0.0460 REMARK 3 T13: 0.0340 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.6011 L22: 0.5828 REMARK 3 L33: 0.3705 L12: 0.4088 REMARK 3 L13: -0.3715 L23: -0.0433 REMARK 3 S TENSOR REMARK 3 S11: -0.0786 S12: 0.0680 S13: -0.2410 REMARK 3 S21: -0.0211 S22: 0.0744 S23: -0.1910 REMARK 3 S31: 0.1667 S32: -0.0164 S33: -0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 117:233) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5712 -13.0490 3.6607 REMARK 3 T TENSOR REMARK 3 T11: 0.2694 T22: 0.2798 REMARK 3 T33: 0.3058 T12: -0.0566 REMARK 3 T13: 0.0098 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 0.9783 L22: 0.7139 REMARK 3 L33: 0.7725 L12: 0.0278 REMARK 3 L13: 0.7744 L23: 0.3449 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: -0.0752 S13: -0.0983 REMARK 3 S21: -0.0869 S22: -0.0941 S23: 0.1753 REMARK 3 S31: 0.0021 S32: -0.1984 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 2 THROUGH 59 OR RESID REMARK 3 69 THROUGH 123 OR RESID 132 THROUGH 233)) REMARK 3 SELECTION : (CHAIN B AND (RESID 2 THROUGH 59 OR RESID REMARK 3 69 THROUGH 123 OR RESID 132 THROUGH 233)) REMARK 3 ATOM PAIRS NUMBER : 2058 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.159 REMARK 200 RESOLUTION RANGE LOW (A) : 54.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% W/V PEG3350, 100 MM MES, PH 5.3, REMARK 280 225 MM AMMONIUM TARTRATE, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.01050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.87400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.01050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.87400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 140 REMARK 465 GLY A 141 REMARK 465 MET A 142 REMARK 465 GLY A 143 REMARK 465 ASP A 234 REMARK 465 LYS A 235 REMARK 465 ASP A 236 REMARK 465 ALA A 237 REMARK 465 ALA A 238 REMARK 465 PHE A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 GLU A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 MET B 1 REMARK 465 GLY B 140 REMARK 465 GLY B 141 REMARK 465 MET B 142 REMARK 465 GLY B 143 REMARK 465 ASP B 234 REMARK 465 LYS B 235 REMARK 465 ASP B 236 REMARK 465 ALA B 237 REMARK 465 ALA B 238 REMARK 465 PHE B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 GLU B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 13 O HOH B 401 2.01 REMARK 500 OE1 GLU B 181 O HOH B 402 2.06 REMARK 500 OE1 GLN A 13 O HOH A 401 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 55 144.75 -170.71 REMARK 500 ALA B 55 144.52 -171.01 REMARK 500 MET B 67 -72.40 63.13 REMARK 500 GLN B 68 132.15 75.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 210 O REMARK 620 2 ASP A 228 OD2 93.4 REMARK 620 3 ADP A 301 O3B 116.0 130.5 REMARK 620 4 ADP A 301 O2A 77.5 87.4 63.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 210 O REMARK 620 2 ASP B 228 OD2 92.1 REMARK 620 3 ADP B 301 O3B 114.5 134.4 REMARK 620 4 ADP B 301 O2A 80.0 93.5 58.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 DBREF 6NO2 A 2 239 UNP B3FHP0 SUCB_BLAHN 16 253 DBREF 6NO2 B 2 239 UNP B3FHP0 SUCB_BLAHN 16 253 SEQADV 6NO2 MET A 1 UNP B3FHP0 INITIATING METHIONINE SEQADV 6NO2 ASP A 114 UNP B3FHP0 LYS 128 ENGINEERED MUTATION SEQADV 6NO2 GLY A 240 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 LEU A 241 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 GLU A 242 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS A 243 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS A 244 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS A 245 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS A 246 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS A 247 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS A 248 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS A 249 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS A 250 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 MET B 1 UNP B3FHP0 INITIATING METHIONINE SEQADV 6NO2 ASP B 114 UNP B3FHP0 LYS 128 ENGINEERED MUTATION SEQADV 6NO2 GLY B 240 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 LEU B 241 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 GLU B 242 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS B 243 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS B 244 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS B 245 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS B 246 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS B 247 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS B 248 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS B 249 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO2 HIS B 250 UNP B3FHP0 EXPRESSION TAG SEQRES 1 A 250 MET ASN ILE HIS GLU TRP GLN SER LYS GLN LEU ILE GLN SEQRES 2 A 250 LYS TYR GLY GLY ARG ALA GLN SER GLY GLU VAL ALA PHE SEQRES 3 A 250 SER PRO GLU ARG SER ARG ASP ILE ALA LYS LYS LEU TRP SEQRES 4 A 250 ASN GLN PHE PRO GLY CYS LYS PHE VAL VAL LYS ALA GLN SEQRES 5 A 250 VAL LEU ALA GLY GLY ARG GLY LYS GLY HIS TRP GLU HIS SEQRES 6 A 250 GLY MET GLN GLY GLY VAL LYS LEU ALA LYS THR PRO GLU SEQRES 7 A 250 GLU VAL TYR GLU ILE ALA ASN GLU MET ILE GLY HIS LYS SEQRES 8 A 250 LEU ILE THR LYS GLN THR GLY ALA LYS GLY ILE ASN CYS SEQRES 9 A 250 ASN LYS VAL MET VAL CYS GLY ALA VAL ASP ILE LEU LYS SEQRES 10 A 250 GLU PHE TYR LEU SER ILE LEU LEU ASP ARG ALA MET GLY SEQRES 11 A 250 CYS PRO VAL ILE ILE ALA THR SER GLN GLY GLY MET GLY SEQRES 12 A 250 ILE GLU GLU VAL ALA GLN LYS CYS PRO GLU CYS LEU PHE SEQRES 13 A 250 LYS VAL PRO ILE SER VAL LYS ASN GLY PRO THR ASN GLU SEQRES 14 A 250 GLN LEU VAL LYS LEU ALA LYS ASP LEU GLY LEU GLU GLY SEQRES 15 A 250 ASP LEU VAL GLN ASP CYS VAL ASP ASN VAL LYS ALA LEU SEQRES 16 A 250 TYR GLN VAL PHE ASP LYS CYS ASP SER THR MET VAL GLU SEQRES 17 A 250 ILE ASN PRO LEU GLY VAL ILE GLU THR PRO THR ASP GLU SEQRES 18 A 250 LYS VAL ILE CYS CYS LEU ASP ALA LYS ILE ALA PHE ASP SEQRES 19 A 250 LYS ASP ALA ALA PHE GLY LEU GLU HIS HIS HIS HIS HIS SEQRES 20 A 250 HIS HIS HIS SEQRES 1 B 250 MET ASN ILE HIS GLU TRP GLN SER LYS GLN LEU ILE GLN SEQRES 2 B 250 LYS TYR GLY GLY ARG ALA GLN SER GLY GLU VAL ALA PHE SEQRES 3 B 250 SER PRO GLU ARG SER ARG ASP ILE ALA LYS LYS LEU TRP SEQRES 4 B 250 ASN GLN PHE PRO GLY CYS LYS PHE VAL VAL LYS ALA GLN SEQRES 5 B 250 VAL LEU ALA GLY GLY ARG GLY LYS GLY HIS TRP GLU HIS SEQRES 6 B 250 GLY MET GLN GLY GLY VAL LYS LEU ALA LYS THR PRO GLU SEQRES 7 B 250 GLU VAL TYR GLU ILE ALA ASN GLU MET ILE GLY HIS LYS SEQRES 8 B 250 LEU ILE THR LYS GLN THR GLY ALA LYS GLY ILE ASN CYS SEQRES 9 B 250 ASN LYS VAL MET VAL CYS GLY ALA VAL ASP ILE LEU LYS SEQRES 10 B 250 GLU PHE TYR LEU SER ILE LEU LEU ASP ARG ALA MET GLY SEQRES 11 B 250 CYS PRO VAL ILE ILE ALA THR SER GLN GLY GLY MET GLY SEQRES 12 B 250 ILE GLU GLU VAL ALA GLN LYS CYS PRO GLU CYS LEU PHE SEQRES 13 B 250 LYS VAL PRO ILE SER VAL LYS ASN GLY PRO THR ASN GLU SEQRES 14 B 250 GLN LEU VAL LYS LEU ALA LYS ASP LEU GLY LEU GLU GLY SEQRES 15 B 250 ASP LEU VAL GLN ASP CYS VAL ASP ASN VAL LYS ALA LEU SEQRES 16 B 250 TYR GLN VAL PHE ASP LYS CYS ASP SER THR MET VAL GLU SEQRES 17 B 250 ILE ASN PRO LEU GLY VAL ILE GLU THR PRO THR ASP GLU SEQRES 18 B 250 LYS VAL ILE CYS CYS LEU ASP ALA LYS ILE ALA PHE ASP SEQRES 19 B 250 LYS ASP ALA ALA PHE GLY LEU GLU HIS HIS HIS HIS HIS SEQRES 20 B 250 HIS HIS HIS HET ADP A 301 42 HET MG A 302 1 HET CL A 303 1 HET ADP B 301 42 HET MG B 302 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 CL CL 1- FORMUL 8 HOH *97(H2 O) HELIX 1 AA1 HIS A 4 TYR A 15 1 12 HELIX 2 AA2 SER A 27 PHE A 42 1 16 HELIX 3 AA3 GLY A 57 GLY A 61 5 5 HELIX 4 AA4 THR A 76 ILE A 88 1 13 HELIX 5 AA5 GLU A 145 CYS A 151 1 7 HELIX 6 AA6 PRO A 152 LEU A 155 5 4 HELIX 7 AA7 THR A 167 LEU A 178 1 12 HELIX 8 AA8 GLY A 182 CYS A 202 1 21 HELIX 9 AA9 HIS B 4 TYR B 15 1 12 HELIX 10 AB1 SER B 27 PHE B 42 1 16 HELIX 11 AB2 GLY B 57 GLY B 61 5 5 HELIX 12 AB3 THR B 76 ILE B 88 1 13 HELIX 13 AB4 GLU B 145 CYS B 151 1 7 HELIX 14 AB5 PRO B 152 LEU B 155 5 4 HELIX 15 AB6 THR B 167 LEU B 178 1 12 HELIX 16 AB7 ASP B 183 CYS B 202 1 20 SHEET 1 AA1 4 GLU A 23 ALA A 25 0 SHEET 2 AA1 4 VAL A 107 GLY A 111 -1 O VAL A 107 N ALA A 25 SHEET 3 AA1 4 PHE A 47 ALA A 51 -1 N VAL A 48 O CYS A 110 SHEET 4 AA1 4 VAL A 71 ALA A 74 -1 O ALA A 74 N PHE A 47 SHEET 1 AA2 3 HIS A 62 TRP A 63 0 SHEET 2 AA2 3 HIS A 90 ILE A 93 -1 O ILE A 93 N HIS A 62 SHEET 3 AA2 3 ILE A 102 CYS A 104 -1 O ILE A 102 N LEU A 92 SHEET 1 AA3 5 PHE A 156 PRO A 159 0 SHEET 2 AA3 5 CYS A 131 THR A 137 -1 N ILE A 134 O VAL A 158 SHEET 3 AA3 5 ILE A 115 ASP A 126 -1 N SER A 122 O ILE A 135 SHEET 4 AA3 5 MET A 206 GLU A 216 -1 O LEU A 212 N PHE A 119 SHEET 5 AA3 5 LYS A 222 CYS A 226 -1 O CYS A 225 N GLY A 213 SHEET 1 AA4 5 PHE A 156 PRO A 159 0 SHEET 2 AA4 5 CYS A 131 THR A 137 -1 N ILE A 134 O VAL A 158 SHEET 3 AA4 5 ILE A 115 ASP A 126 -1 N SER A 122 O ILE A 135 SHEET 4 AA4 5 MET A 206 GLU A 216 -1 O LEU A 212 N PHE A 119 SHEET 5 AA4 5 LYS A 230 ALA A 232 -1 O LYS A 230 N GLU A 208 SHEET 1 AA5 4 GLU B 23 ALA B 25 0 SHEET 2 AA5 4 VAL B 107 GLY B 111 -1 O VAL B 109 N GLU B 23 SHEET 3 AA5 4 PHE B 47 ALA B 51 -1 N VAL B 48 O CYS B 110 SHEET 4 AA5 4 VAL B 71 ALA B 74 -1 O ALA B 74 N PHE B 47 SHEET 1 AA6 2 HIS B 90 LEU B 92 0 SHEET 2 AA6 2 ILE B 102 CYS B 104 -1 O CYS B 104 N HIS B 90 SHEET 1 AA7 5 PHE B 156 PRO B 159 0 SHEET 2 AA7 5 CYS B 131 THR B 137 -1 N ILE B 134 O VAL B 158 SHEET 3 AA7 5 ILE B 115 ASP B 126 -1 N TYR B 120 O THR B 137 SHEET 4 AA7 5 MET B 206 GLU B 216 -1 O LEU B 212 N PHE B 119 SHEET 5 AA7 5 LYS B 222 CYS B 226 -1 O CYS B 225 N GLY B 213 SHEET 1 AA8 5 PHE B 156 PRO B 159 0 SHEET 2 AA8 5 CYS B 131 THR B 137 -1 N ILE B 134 O VAL B 158 SHEET 3 AA8 5 ILE B 115 ASP B 126 -1 N TYR B 120 O THR B 137 SHEET 4 AA8 5 MET B 206 GLU B 216 -1 O LEU B 212 N PHE B 119 SHEET 5 AA8 5 LYS B 230 ALA B 232 -1 O LYS B 230 N GLU B 208 SSBOND 1 CYS A 151 CYS A 154 1555 1555 2.03 SSBOND 2 CYS B 151 CYS B 154 1555 1555 2.03 LINK O ASN A 210 MG MG A 302 1555 1555 2.40 LINK OD2 ASP A 228 MG MG A 302 1555 1555 2.11 LINK O ASN B 210 MG MG B 302 1555 1555 2.44 LINK OD2 ASP B 228 MG MG B 302 1555 1555 2.11 LINK O3B ADP A 301 MG MG A 302 1555 1555 2.16 LINK O2A ADP A 301 MG MG A 302 1555 1555 2.60 LINK O3B ADP B 301 MG MG B 302 1555 1555 2.92 LINK O2A ADP B 301 MG MG B 302 1555 1555 2.26 CISPEP 1 ASN A 210 PRO A 211 0 4.33 CISPEP 2 ASN B 210 PRO B 211 0 4.45 SITE 1 AC1 17 GLN A 20 VAL A 48 LYS A 50 GLY A 57 SITE 2 AC1 17 ARG A 58 GLY A 59 VAL A 71 GLY A 111 SITE 3 AC1 17 ALA A 112 VAL A 113 ILE A 115 GLU A 118 SITE 4 AC1 17 ASN A 210 PRO A 211 ASP A 228 MG A 302 SITE 5 AC1 17 HOH A 436 SITE 1 AC2 3 ASN A 210 ASP A 228 ADP A 301 SITE 1 AC3 2 SER A 27 HOH A 433 SITE 1 AC4 15 GLN B 20 VAL B 48 LYS B 50 GLY B 57 SITE 2 AC4 15 ARG B 58 GLY B 59 VAL B 71 GLY B 111 SITE 3 AC4 15 VAL B 113 ILE B 115 GLU B 118 ASN B 210 SITE 4 AC4 15 PRO B 211 ASP B 228 MG B 302 SITE 1 AC5 3 ASN B 210 ASP B 228 ADP B 301 CRYST1 114.021 77.748 77.112 90.00 125.17 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008770 0.000000 0.006181 0.00000 SCALE2 0.000000 0.012862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015865 0.00000